TCONS_00043674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043674
Unique NameTCONS_00043674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043674 ID=TCONS_00043674|Name=TCONS_00043674|organism=Clytia hemisphaerica|type=transcript|length=469bp
TAATTACAAAAGCGCAAGGCCCGCTTCGGAAATTAGagaaaaacattgca
aatttctAAACTTAGTTTTTTTGTTGACTTGAGTGTAATACGTGGGGATA
AAAGCGTACATTTTTATGTACTCAAATCCAAAATCTAAATCAAAGAAAAG
GGATGCAGAAGGAAGCAAAAAAGAATCAAACAGCGGGAACATTCGAATGA
GAAATGATGCAAATTATGAAGAACTCCTATTACCGAAATGTTGCACTGCT
GAATGAGAAATTACTTTTCATCAAATGGCAAAATTAAAGTAAAGTCAACA
AGTCGCTTCCAATCAGCATTGGTAATGATGGCACGAACAAGCtgaaatca
ttttcaaagaaataaaaacttgattttaaaatttccaattGCTTCTTTCT
ATTCATCAGTGTTTTACTGTTATCTGGAGAAAGATAGCATGGACAACTTT
CGACCCTTACTGAATGTAG
Run BLAST on NCBI

transcript from alignment at sc0004458:2758..4122-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043674 ID=TCONS_00043674|Name=TCONS_00043674|organism=Clytia hemisphaerica|type=transcript|length=1365bp|location=Sequence derived from alignment at sc0004458:2758..4122- (Clytia hemisphaerica)
TAATTACAAAAGCGCAAGGCCCGCTTCGGAAATTAGAGAAAAACATTGCA
AATTTCTAAACTTAGTTTTTTTGTTGACTTGAGTGTAATACGTGGGGATA
AAAGCGTACATTTTTATGTACTCAAATCCAAAATCTAAATCAAAGAAAAG
GGATGCAGAAGGAAGCAAAAAAGAATCAAACAGTAAGTTATTTCTACCGA
GTTCAACTTCCTGTTCCGCTGACTGTGAAAGCAAGGGCTTTAGGTATTCA
AGAGAATTGGCTATCAAGGAAACATATTCGTCCTCCCTTGTGCAAAGTTT
CACTCGTCTTTAGGAGAAAAAATTTTAATTTTGGGATGGCAAGGGATGGC
AAGTTGTCAAGAGGGGTGTCAGAATTTTATATTTTGTCGTGATTTACTGT
AGGTTGTTTTATGGATATTCTCTGCCTGTCTTGAGAAATCTTGAGGCCTA
AGATTCGGTTAAAATGGGCTTAAACCAATGCTGAAAGCTATACAGGTTTC
CTCTGTATAAGAACATAACGCTCCATTGGCAAAAATATCAAGAACAAATC
AAGAACATTTCAAAGTCGTGCAAACACCCGATTTCTTAAGAAAATAGACA
AAATTCCTCAAAAAAACGGTGAAAAAAAGATGATGGAAAGAACATTTTTA
GGCTTAAAACTCACATCCGGAGGCTTCAAAAATTGGATATTCTTAAAAAA
ACATTTAGACGGAGACTTGAAGTTTTAATGTTGCTTTTTATCCTCAAAAC
CAGTGCGGTAGTATAATAAGTTAGTCTTTAGTTGTTAGCTTAATATTGTT
ACTTTTTCGTTTCAACTTTAGGCGGGAACATTCGAATGAGAAATGATGCA
AATTATGAAGAACTCCTATTACCGAAATGTTGCACTGCTGAATGAGAAAT
TACTTTTCATCAAATGTAAGAACTTTATTATTCTAAATTTTACATTGAGA
TAGATACACCAAATGTATTTGACTGAAAATGTTTTCCTTAATGGTAAAAA
TTGTCTTTCAGGGAATAAAGTTTATTTTGAGCTAAAATTTGACTTTCATC
TCTGGGATGGCTCAAAAGAATACTGTACGGATTTTTTAAATTCTATTTGC
TTGAACAATGTTAAATACTGTTATGTATCCTGATATAATTTTCAAATTTT
TTGTTTTATTTTCTCTTTACAGGGCAAAATTAAAGTAAAGTCAACAAGTC
GCTTCCAATCAGCATTGGTAATGATGGCACGAACAAGCTGAAATCATTTT
CAAAGAAATAAAAACTTGATTTTAAAATTTCCAATTGCTTCTTTCTATTC
ATCAGTGTTTTACTGTTATCTGGAGAAAGATAGCATGGACAACTTTCGAC
CCTTACTGAATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027358XLOC_027358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043674-exon-sc0004458-1575043694:3941..4122TCONS_00043674-exon-sc0004458-1575043694:3941..4122Clytia hemisphaericaexon
TCONS_00043674-exon-sc0004458-1575043694:3208..3301TCONS_00043674-exon-sc0004458-1575043694:3208..3301Clytia hemisphaericaexon
TCONS_00043674-exon-sc0004458-1575043694:2758..2950TCONS_00043674-exon-sc0004458-1575043694:2758..2950Clytia hemisphaericaexon
TCONS_00043674-exon-sc0004458-1510915933:3941..4122TCONS_00043674-exon-sc0004458-1510915933:3941..4122Clytia hemisphaericaexon
TCONS_00043674-exon-sc0004458-1510915933:3208..3301TCONS_00043674-exon-sc0004458-1510915933:3208..3301Clytia hemisphaericaexon
TCONS_00043674-exon-sc0004458-1510915933:2758..2950TCONS_00043674-exon-sc0004458-1510915933:2758..2950Clytia hemisphaericaexon
TCONS_00043674-exon-sc0004458-1491911889:3941..4122TCONS_00043674-exon-sc0004458-1491911889:3941..4122Clytia hemisphaericaexon
TCONS_00043674-exon-sc0004458-1491911889:3208..3301TCONS_00043674-exon-sc0004458-1491911889:3208..3301Clytia hemisphaericaexon
TCONS_00043674-exon-sc0004458-1491911889:2758..2950TCONS_00043674-exon-sc0004458-1491911889:2758..2950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004458supercontigsc0004458:2758..4122 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
167.738	165.114	222.547	268.885	36.6548	34.3647	12.7153	17.0014	8.14347	7.6862	0.691225	1.3431	0	0.376981	0.30993	0.305585	0	0.128618	0	0	0.527721	0.472991	43.6784	29.6114	6.15314	4.83778	0.650068	2.74517	8.31306	9.92306
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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