TCONS_00043672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043672
Unique NameTCONS_00043672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043672 ID=TCONS_00043672|Name=TCONS_00043672|organism=Clytia hemisphaerica|type=transcript|length=1631bp
TTTCTGTTTAATTGTACCcttacagtaacaccgttttgggcacatgtttc
tggttgttttgttacttgtggtaatcaaaactacaatcaaggtcaaaaat
tttgagacAGAAAGGATTACAAGCTGTCTCCCCCCTTTCCCCCCATTGGC
AATGTTCACTGCACGATGAGACAGCCGTACACAATAAACAGCAGCAATTA
AAAAGCACGATTGCCTTGATTTGTTGATTGAAGCGAAAACCCAAACCGTG
TGCGTGTGCGAAGGAGTGTGGCTGAAAATGGCCAAAGAGGTGTTGGAACT
CAATGGTATTGATGAAAAAGAATTTGCCCAGGCTGTTTACACGAACCTCG
AACTGGGGAGgcgaaaatttggaaatataaTCTTGGTTGGGGGCACAAAC
TGGGCCAAAACGTTTTTATTGAAACCGATGCGTTTGATCTATGAAAGATT
CCTGTTCGAGAACCCCGCAGGTCACAANACGTTTTTATTGAAACCGATGC
GTTTGATCTATGAAAGATTCCTGTTCGAGAACCCCGCAGGTCACAAATTT
GGTTTGGGCGGCTGCAAGGATAAGACTGTATTCCTTTTACAAGATTTTAG
GTGGAACCTTGAGCTCATTAAATGGTCAGACTTTCTGATTTTGCTTGACG
AAGATGAGACGGTCAAACTACCCGCTCCCCGAAACTTGTACAGCGAAGAC
ATTGTCATAAAAAACCAAATTTCTATTTCCGCAACCAGCGTGGCTGAAAT
ACAACAGAAAATGCCTTACAATCATCGCGAACATGATCGGGTGAGGGAAG
AAAACAAGATGATGCGCTCCCACTGGAGAGTGTTCCGCTTTGAGCAGGAG
TTTGCCTAGGAAGATCAAATAAAAGTGCAGCCGTGCCCACACTGTTTCGC
CCGATTGATCTTGCAATCGTAAAATCAATTGGGATTATAACTTTTTGACA
CGCGTTACCATGAGTTACCCCACGCGTTACCCCATGAGTTACCCCAATTT
GTAAGGTTTTGCAGGCAAAACTATACGCGTTACCGCGTTTCCccattgta
aaaaaataatatactATATATAAATGGTCAGATCGAGTTTTTCGCCCACG
ACAGAGCAACCCAGTAATGCCAATAATGCATTCATTCCAATCCTTCCTGG
ATTCAATTCACAAGGTGATCAATCGTTGATTTCGACGACAATGTCATCGC
CCGTTCGGCAAACATTAAAATACCCAAGTGCTGGTGGTCATAACTTTAAA
GAAATGAATAATAAACattttcaataTACGATCATGATGGAGTTTCAACG
ACTGAGTCAGAATCAAGATCGTATACTAAGTCTACTCCAGAATTCAAACA
TGGACACCGAAGAAAGCGATGATACCGGAGATCAAATCCTTGTGGCAAGT
TCCTCAATGGaagaattcaaaaaagaggAATTAGAGCTAAAGCAGAGCAG
CAAAAAACGAAAGATTAAGCGAAGACTCATAAGACAATTATCATCTGGCA
AACCTGCGAGAAAGGCTTTGCTTTCGGCATTGGACTCGCTGATGACTAGA
GCTGTGCAAGGTCAATTTTCAAAAGCTGGCAAGAAAGGAAAACTGAACTT
TCAAGACACACATCATTATACGTGCATTATG
Run BLAST on NCBI

protein sequence of TCONS_00043672-protein

>TCONS_00043672-protein ID=TCONS_00043672-protein|Name=TCONS_00043672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MAKEVLELNGIDEKEFAQAVYTNLELGRRKFGNIILVGGTNWAKTFLLKP
MRLIYERFLFENPAGHXTFLLKPMRLIYERFLFENPAGHKFGLGGCKDKT
VFLLQDFRWNLELIKWSDFLILLDEDETVKLPAPRNLYSEDIVIKNQISI
SATSVAEIQQKMPYNHREHDRVREENKMMRSHWRVFRFEQEFA
Run BLAST on NCBI

transcript from alignment at sc0004457:8..2633+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043672 ID=TCONS_00043672|Name=TCONS_00043672|organism=Clytia hemisphaerica|type=transcript|length=2626bp|location=Sequence derived from alignment at sc0004457:8..2633+ (Clytia hemisphaerica)
TTTCTGTTTAATTGTACCcttacagtaacaccgttttgggcacatgtttc
tggttgttttgttacttgtggtaatcaaaactacaatcaaggtcaaaaat
tttgagacAGAAAGGATTACAAGCTGTCTCCCCCCTTTCCCCCCATTGGC
AATGTTCACTGCACGATGAGACAGCCGTACACAATAAACAGCAGCAATTA
AAAAGCACGATTGCCTTGATTTGTTGATTGAAGCGAAAACCCAAACCGTG
TGCGTGTGCGAAGGAGTGTGGCTGAAAATGGCCAAAGAGGTGTTGGAACT
CAATGGTATTGATGAAAAAGAATTTGCCCAGGCTGTTTACACGAACCTCG
AACTGGGGAGgcgaaaatttggaaatataaTCTTGGTTGGGGGCACAAAC
TGGGCCAAAACGTTTTTATTGAAACCGATGCGTTTGATCTATGAAAGATT
CCTGTTCGAGAACCCCGCAGGTCACAANACGTTTTTATTGAAACCGATGC
GTTTGATCTATGAAAGATTCCTGTTCGAGAACCCCGCAGGTCACAAATTT
GGTTTGGGCGGCTGCAAGGATAAGACTGTATTCCTTTTACAAGATTTTAG
GTGGAACCTTGAGCTCATTAAATGGTCAGACTTTCTGATTTTGCTTGACG
AAGATGAGACGGTCAAACTACCCGCTCCCCGAAACTTGTACAGCGAAGAC
ATTGTCATAAAAAACCAAATTTCTATTTCCGCAACCAGCGTGGCTGAAAT
ACAACAGAAAATGCCTTACAATCATCGCGAACATGATCGGGTGAGGGAAG
AAAACAAGATGATGCGCTCCCACTGGAGAGTGTTCCGCTTTGAGCAGGAG
TTTGCCTAGGAAGATCAAATAAAAGTGCAGCCGTGCCCACACTGTTTCGC
CCGATTGATCTTGCAATCGTAAAATCAATTGGGATTATAACTTTTTGACA
CGCGTTACCATGAGTTACCCCACGCGTTACCCCATGAGTTACCCCAATTT
GTAAGGTTTTGCAGGCAAAACTATACGCGTTACCGCGTTTCCccattgta
aaaaaataatatactATATATAAATGGTCAGATCGAGTTTTTCGCCCACG
ACAGAGCAACCCAGTAATGCCAATAATGCATTCATTCCAATCCTTCCTGG
ATTCAATTCACAAGGTATAATGTCTTGAGATATTTTAAGCTAATTGTGTA
CATACAATAATTATTTTTAGATAAAGTAAGATTTTGAATGCTTTCTGCAA
TAGGAACACCCAGATATTTCCACATTTGTAGTTACTCTATGCTATATTAA
AATACGTTAAATTACGTTTCGGTTCGTGAAGAATATATACATTTCCACGA
CACTGATAGTTTAAATATTCCTCTCTAGGTGATCAATCGTTGATTTCGAC
GACAATGTCATCGCCCGTTCGGCAAACATTAAAATACCCAAGTGCTGGTG
GTCATAACTTTAAAGAAATGAATAATAAACGTAAGTTCGTAATAAAGTTC
TTTGATACAAGTCCTTTTACCTGCTTTCTTAAAATCTCTCCCTCTCTAAC
TTATTTGGAGCTATCCCGATGTCATATCACACAGTGCTTATCTAAttaat
ataacgttagatgaacgctaAAACACGAACTAGTGAAAAagtgtgtacat
caaattagtAATTGCATCAttgtactttcattttcagattttcaataTAC
GATCATGATGGAGTTTCAACGACTGAGTCAGAATCAAGATCGTATACTAA
GTCTACTCCAGAATTCAAACATGGACACCGAAGAAAGCGATGATACCGGA
GATCAAATCCTTGTGGCAAGTTCCTCAATGGaagaattcaaaaaagaggA
ATTAGAGCTAAAGCAGAGCAGCAAAAAACGAAAGATTAAGGTACGGCTCA
GACTTGTTATACCAACCTTATTCCTTATGAGGATAATTTGAAGTATACAC
CTCGATTTTCTTGCATCCACGGCAAGGACCCGTCgtttattagtttttga
aaacatCTTCAGCTGTCAATTGCAAGGTCTCTCATTTTGTTGGTACATAg
atagcctgattttagtccATTTTCTTTTGGAGGTATTAACAAGATATAAT
TTTCAACCCAAACTAACGTGTCTATTAAATATGGTTTATCAGGCACCTTA
AGTTATCTTGGTAATCAatgctcttttttataagcatagtaTTTTTATCA
TACTATAgctcaaatttgcaaaagaaatttATGATGCTAAGCTTAGCTCA
AAGGTGGGATATTCATCATTCAAATGAGATATTTTCTGTTTAagtagaaa
agaaaaattgtaaatagaacacttttgacctttttatctgggaaaatgaa
aatcagccaaaattggcgatgttttgaaatataatatggTATCATACAAT
CAGCACATGGCTTTTGGTTGCCCCTTGTTTGCTTAAatttgtacatattt
tttacACATTTCAGCGAAGACTCATAAGACAATTATCATCTGGCAAACCT
GCGAGAAAGGCTTTGCTTTCGGCATTGGACTCGCTGATGACTAGAGCTGT
GCAAGGTCAATTTTCAAAAGCTGGCAAGAAAGGAAAACTGAACTTTCAAG
ACACACATCATTATACGTGCATTATG

Coding sequence (CDS) from alignment at sc0004457:8..2633+

>TCONS_00043672 ID=TCONS_00043672|Name=TCONS_00043672|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0004457:8..2633+ (Clytia hemisphaerica)
ATGGCCAAAGAGGTGTTGGAACTCAATGGTATTGATGAAAAAGAATTTGC
CCAGGCTGTTTACACGAACCTCGAACTGGGGAGgcgaaaatttggaaata
taaTCTTGGTTGGGGGCACAAACTGGGCCAAAACGTTTTTATTGAAACCG
ATGCGTTTGATCTATGAAAGATTCCTGTTCGAGAACCCCGCAGGTCACAA
NACGTTTTTATTGAAACCGATGCGTTTGATCTATGAAAGATTCCTGTTCG
AGAACCCCGCAGGTCACAAATTTGGTTTGGGCGGCTGCAAGGATAAGACT
GTATTCCTTTTACAAGATTTTAGGTGGAACCTTGAGCTCATTAAATGGTC
AGACTTTCTGATTTTGCTTGACGAAGATGAGACGGTCAAACTACCCGCTC
CCCGAAACTTGTACAGCGAAGACATTGTCATAAAAAACCAAATTTCTATT
TCCGCAACCAGCGTGGCTGAAATACAACAGAAAATGCCTTACAATCATCG
CGAACATGATCGGGTGAGGGAAGAAAACAAGATGATGCGCTCCCACTGGA
GAGTGTTCCGCTTTGAGCAGGAGTTTGCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027356XLOC_027356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043672-exon-sc0004457-1491911889:8..1171TCONS_00043672-exon-sc0004457-1491911889:8..1171Clytia hemisphaericaexon
TCONS_00043672-exon-sc0004457-1510915933:8..1171TCONS_00043672-exon-sc0004457-1510915933:8..1171Clytia hemisphaericaexon
TCONS_00043672-exon-sc0004457-1575043694:8..1171TCONS_00043672-exon-sc0004457-1575043694:8..1171Clytia hemisphaericaexon
TCONS_00043672-exon-sc0004457-1491911889:1386..1487TCONS_00043672-exon-sc0004457-1491911889:1386..1487Clytia hemisphaericaexon
TCONS_00043672-exon-sc0004457-1510915933:1386..1487TCONS_00043672-exon-sc0004457-1510915933:1386..1487Clytia hemisphaericaexon
TCONS_00043672-exon-sc0004457-1575043694:1386..1487TCONS_00043672-exon-sc0004457-1575043694:1386..1487Clytia hemisphaericaexon
TCONS_00043672-exon-sc0004457-1491911889:1695..1897TCONS_00043672-exon-sc0004457-1491911889:1695..1897Clytia hemisphaericaexon
TCONS_00043672-exon-sc0004457-1510915933:1695..1897TCONS_00043672-exon-sc0004457-1510915933:1695..1897Clytia hemisphaericaexon
TCONS_00043672-exon-sc0004457-1575043694:1695..1897TCONS_00043672-exon-sc0004457-1575043694:1695..1897Clytia hemisphaericaexon
TCONS_00043672-exon-sc0004457-1491911889:2472..2633TCONS_00043672-exon-sc0004457-1491911889:2472..2633Clytia hemisphaericaexon
TCONS_00043672-exon-sc0004457-1510915933:2472..2633TCONS_00043672-exon-sc0004457-1510915933:2472..2633Clytia hemisphaericaexon
TCONS_00043672-exon-sc0004457-1575043694:2472..2633TCONS_00043672-exon-sc0004457-1575043694:2472..2633Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043672-proteinTCONS_00043672-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004457supercontigsc0004457:8..2633 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.84544	3.68374	2.73735	2.97114	20.2207	16.9157	9.62099	12.8058	3.43853	4.31906	3.19062	3.25074	1.90324	2.515	1.88368	1.48757	1.7256	1.70171	1.30081	1.22418	1.28824	1.19931	1.51682	1.7737	3.15555	5.28533	0.976453	0.694371	1.00318	1.30556
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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