TCONS_00043658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043658
Unique NameTCONS_00043658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043658 ID=TCONS_00043658|Name=TCONS_00043658|organism=Clytia hemisphaerica|type=transcript|length=408bp
CGAACAATAAGATTGGAGAAATTGGCATCGACACCTTGTTCTTGTAACAA
TCCTTCCCATTGTTGAGCGTCTACACTGTTTTGGAAGTTAAAATTTTGTA
CCACATTGTAAAATTCTGTTTCCTCCTTTacatttctcaaaaatgtcaca
aCATCTTTTCTTAACTTACCTATATCTGTGTATCTTTTTGATTTAGGAAG
ATTAAAATAAACATTTGGGCGATGAATTTGTTCTACAACAGCATAGTAAA
AGCAATTTCCATCAGAAGGAGTAGGACGATTCAAAGATACATTGAGCCCA
ATACTACACCCTCTTGCAACCAAAAATCTAGCTCGCTCTAAAAGCCTATC
TGTTGTATTATCCATAGGTCTGGCTCTCATTACaacctgaaagaaaaaaa
gaaatttg
Run BLAST on NCBI

protein sequence of TCONS_00043658-protein

>TCONS_00043658-protein ID=TCONS_00043658-protein|Name=TCONS_00043658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
KFLFFFQVVMRARPMDNTTDRLLERARFLVARGCSIGLNVSLNRPTPSDG
NCFYYAVVEQIHRPNVYFNLPKSKRYTDIGKLRKDVVTFLRNVKEETEFY
NVVQNFNFQNSVDAQQWEGLLQEQGVDANFSNLIV
Run BLAST on NCBI

transcript from alignment at sc0004442:6226..6633

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043658 ID=TCONS_00043658|Name=TCONS_00043658|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at sc0004442:6226..6633 (Clytia hemisphaerica)
caaatttctttttttctttcaggttGTAATGAGAGCCAGACCTATGGATA
ATACAACAGATAGGCTTTTAGAGCGAGCTAGATTTTTGGTTGCAAGAGGG
TGTAGTATTGGGCTCAATGTATCTTTGAATCGTCCTACTCCTTCTGATGG
AAATTGCTTTTACTATGCTGTTGTAGAACAAATTCATCGCCCAAATGTTT
ATTTTAATCTTCCTAAATCAAAAAGATACACAGATATAGGTAAGTTAAGA
AAAGATGttgtgacatttttgagaaatgtAAAGGAGGAAACAGAATTTTA
CAATGTGGTACAAAATTTTAACTTCCAAAACAGTGTAGACGCTCAACAAT
GGGAAGGATTGTTACAAGAACAAGGTGTCGATGCCAATTTCTCCAATCTT
ATTGTTCG

Coding sequence (CDS) from alignment at sc0004442:6226..6633

>TCONS_00043658 ID=TCONS_00043658|Name=TCONS_00043658|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0004442:6226..6633 (Clytia hemisphaerica)
aaatttctttttttctttcaggttGTAATGAGAGCCAGACCTATGGATAA
TACAACAGATAGGCTTTTAGAGCGAGCTAGATTTTTGGTTGCAAGAGGGT
GTAGTATTGGGCTCAATGTATCTTTGAATCGTCCTACTCCTTCTGATGGA
AATTGCTTTTACTATGCTGTTGTAGAACAAATTCATCGCCCAAATGTTTA
TTTTAATCTTCCTAAATCAAAAAGATACACAGATATAGGTAAGTTAAGAA
AAGATGttgtgacatttttgagaaatgtAAAGGAGGAAACAGAATTTTAC
AATGTGGTACAAAATTTTAACTTCCAAAACAGTGTAGACGCTCAACAATG
GGAAGGATTGTTACAAGAACAAGGTGTCGATGCCAATTTCTCCAATCTTA
TTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027342XLOC_027342Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043658-proteinTCONS_00043658-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043658-exon-sc0004442-1491911889:6226..6633TCONS_00043658-exon-sc0004442-1491911889:6226..6633Clytia hemisphaericaexon
TCONS_00043658-exon-sc0004442-1510915933:6226..6633TCONS_00043658-exon-sc0004442-1510915933:6226..6633Clytia hemisphaericaexon
TCONS_00043658-exon-sc0004442-1575043694:6226..6633TCONS_00043658-exon-sc0004442-1575043694:6226..6633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004442supercontigsc0004442:6226..6633 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.17828	0	0	0	0	0	0	0	0.300466	0.186088	0	0	0.118569	0	0	0.108639	0	0	0	0	0	0	0	0	0	0.17083	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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