TCONS_00043645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043645
Unique NameTCONS_00043645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043645 ID=TCONS_00043645|Name=TCONS_00043645|organism=Clytia hemisphaerica|type=transcript|length=447bp
CCCAAGTGGCtgtaaaatctttgtttgtgcGGATGTTAGTTAAATAAAAA
AGCTGTAAATAGCATGCGTTTTTAAATACCCTGTTCAaacaaattttggc
gggaagaaaattttgcagatttgtcttaaatccgccaaattaagttcccg
tcaaatataattttattcgcaatttgcaaattaaaatcctgctaaattta
attttttccgtTTTAAGTTTGATTTTTCACTTATAAGGTACCATTGACCG
CAAAAATAAacattgttatttttgttaaaattttgttgaatttgtttgTT
ATAAACATTGGTAGTGCATAGAATGCACCCGGCTGAGCTTAGGGAGGGGC
TAAGCCATTTTTGCTTGTTTGGGgctgtattaaaaaaaaactggtggcta
gcttgctaggggcTGAGTGATGAGTAATAGAACTTGGGGCAGCTGAT
Run BLAST on NCBI

transcript from alignment at sc0004428:6043..6489

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043645 ID=TCONS_00043645|Name=TCONS_00043645|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0004428:6043..6489 (Clytia hemisphaerica)
ATCAGCTGCCCCAAGTTCTATTACTCATCACTCAgcccctagcaagctag
ccaccagtttttttttaatacagcCCCAAACAAGCAAAAATGGCTTAGCC
CCTCCCTAAGCTCAGCCGGGTGCATTCTATGCACTACCAATGTTTATAAc
aaacaaattcaacaaaattttaacaaaaataacaatgtTTATTTTTGCGG
TCAATGGTACCTTATAAGTGAAAAATCAAACTTAAAacggaaaaaattaa
atttagcaggattttaatttgcaaattgcgaataaaattatatttgacgg
gaacttaatttggcggatttaagacaaatctgcaaaattttcttcccgcc
aaaatttgttTGAACAGGGTATTTAAAAACGCATGCTATTTACAGCTTTT
TTATTTAACTAACATCCgcacaaacaaagattttacaGCCACTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027329XLOC_027329Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043645-exon-sc0004428-1491911889:6043..6489TCONS_00043645-exon-sc0004428-1491911889:6043..6489Clytia hemisphaericaexon
TCONS_00043645-exon-sc0004428-1510915933:6043..6489TCONS_00043645-exon-sc0004428-1510915933:6043..6489Clytia hemisphaericaexon
TCONS_00043645-exon-sc0004428-1575043694:6043..6489TCONS_00043645-exon-sc0004428-1575043694:6043..6489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004428supercontigsc0004428:6043..6489 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149066	0.436089	0.337561	1.48613	0.201024	0	0.383296	0	0	0.311189	1.05717	0.198554	0	0	0.169289	0.181673	0.33571	0.114697	0.158461	0.165818	0.576502	0.421797	0.170916	0.155388	0	0	1.2264	1.30884	0.165452	0.674277
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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