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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043629 ID=TCONS_00043629|Name=TCONS_00043629|organism=Clytia hemisphaerica|type=transcript|length=549bp
GTCATCTTGTACAGGCTATTAACTGGAAAATATCCACAAAAAACGTGGTT
TAAAGATTCTTTTTTCTCTGCAGAATGCCGAGACCTCTTGCTTTCTATGT
TGAAATATGAACCACAACATCGTCCATCAATCAACGAAATTGCCAACCAC
CCTTGGTTTGCATCTCAAGACGAAGAGGTTAATAAAGAAAGTCAAGAGAA
CGAAAAACTTCAAATGATTAACAAACTTGTTGAAAAGCTTGATGGTCTAA
ACGCAAACAGAAAACAACTTGACGAAGCGTTAGTCcaagctaaaaacaaa
aacaagattttgaaaCAGCAACTCGGCATTGCACAAAAGGATCAAATCCT
TCAACACAACGGAAAATCTATCTTGAAACCAAACACGGTTCCAATCAACA
ACATCAAAGTCATCAAAGATGAAAAACGTGTGATGATTGAaaacttgatt
aaaaaaatttacaacatCAAGAATGTCATCAAGAACAAAAACCGAATGCT
GGTTGAGTTAAAGAACGAAAATACCAAACTTGCGCAAGACATCGAGAAA Run BLAST on NCBI protein sequence of TCONS_00043629-protein >TCONS_00043629-protein ID=TCONS_00043629-protein|Name=TCONS_00043629-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
VILYRLLTGKYPQKTWFKDSFFSAECRDLLLSMLKYEPQHRPSINEIANH
PWFASQDEEVNKESQENEKLQMINKLVEKLDGLNANRKQLDEALVQAKNK
NKILKQQLGIAQKDQILQHNGKSILKPNTVPINNIKVIKDEKRVMIENLI
KKIYNIKNVIKNKNRMLVELKNENTKLAQDIEK Run BLAST on NCBI transcript from alignment at sc0004410:5369..6849- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043629 ID=TCONS_00043629|Name=TCONS_00043629|organism=Clytia hemisphaerica|type=transcript|length=1481bp|location=Sequence derived from alignment at sc0004410:5369..6849- (Clytia hemisphaerica)
GTCATCTTGTACAGGCTATTAACTGGAAAATATCCACAAAAAACGTGGTT
TAAAGATTCTTTTTTCTCTGCAGGTAGGATTTTTGTCCTCGACTTTGTTC
TAGTTGAATTTTTATGTAAATTTACATCTTCTCAACAAAAGTCGTTGATC
AGCCACGATTCCCCTCAAATCAAACACTGCCAAAATCTATTTACAGACCT
TTTTGTTCGGGTTCCTCTAAATAAAACAATTTCGCATTCTTCACTTTAGA
ATGCCGAGACCTCTTGCTTTCTATGTTGAAATATGAACCACAACATCGTC
CATCAATCAACGAAATTGCCAACCACCCTTGGTTTGCATCTCAAGACGAA
GAGGTTAATAAAGAAAGTCAAGAGAACGAAAAACTTCAAATGATTAACAA
ACTTGTTGAAAAGCTTGATGGTCTAAACGCAAACAGAAAACAACTTGACG
AAGCGTTAGTCCAAGCTAAAAACAAAAACAAGATTTTGAAACAGCAACTC
GGCATTGCACAAAAGGTACATTAAAGATTTTCTTTTAAATTAAGTAGATA
ACGTTTGCTAGCTCGTCAGTGAATTACAAGCTTTTTCACATCGAGTTGAA
CCGAACGTGGAGCAATATTGATTACAAAGAAGGGAAGAAATATTTTTTTT
GTTTATTCAGCACAAATTTAACACAATATAACTATAGGAGACACCCGTCT
CATATAAAACAAGTGTCTAAAATGAAACGGGAACACTTCTGTAAAATTAA
AACCTTTAAGAAGTATATTTCATTGAAGCTTAATTTTGTCATATTTCATT
GAAGCTTAATTTTGTCAAGTAAGCCATGGTCACCTGTCGTTTCTTCTCGT
TGGGCCGATGAAACGATAACTCGGATACTATGCGAAATTCAAAGGGGAGG
CAGATCTAAAATATATATTTCTTGCTCCTTTCTGGCCGATTGAAAATAAT
TGTATTATTCTTTTGGCCTTCATTTTAGGATCAAATCCTTCAACACAACG
GAAAATCTATCTTGAAACCAAACACGGTAAGCATTATCTTCATAAAAATA
ATTCGCCTTTGCCTCGCTGACCCAATGAGAATTTTTTTGACACGTAAGAA
TGAAAAGAAGGAGGTGAATGAGAAGTAGTTTTTAATCGTGTTCAACTTAA
AAGTTGTTTTAACTCGAGTTTGGGCGAGCGTTAGAAATCTTGTTCCTGCT
TAATTCTTTTATATTTTTAACAAAATATTTTAAATGCAGTATCAAACAGA
TCAGTAAACCAGATTGATTGCTGACTCAACATTTTAATGATGGTAAATAT
TTTTATTTATTTTCTGTAGGTTCCAATCAACAACATCAAAGTCATCAAAG
ATGAAAAACGTGTGATGATTGAAAACTTGATTAAAAAAATTTACAACATC
AAGAATGTCATCAAGAACAAAAACCGAATGCTGGTTGAGTTAAAGAACGA
AAATACCAAACTTGCGCAAGACATCGAGAAA Coding sequence (CDS) from alignment at sc0004410:5369..6849- >TCONS_00043629 ID=TCONS_00043629|Name=TCONS_00043629|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0004410:5369..6849- (Clytia hemisphaerica)
GTTCCAATCAACAACATCAAAGTCATCAAAGATGAAAAACGTGTGATGAT
TGAAAACTTGATTAAAAAAATTTACAACATCAAGAATGTCATCAAGAACA
AAAACCGAATGCTGGTTGAGTTAAAGAACGAAAATACCAAACTTGCGCAA
GACATCGAGAAAGATCAAATCCTTCAACACAACGGAAAATCTATCTTGAA
ACCAAACACGAATGCCGAGACCTCTTGCTTTCTATGTTGAAATATGAACC
ACAACATCGTCCATCAATCAACGAAATTGCCAACCACCCTTGGTTTGCAT
CTCAAGACGAAGAGGTTAATAAAGAAAGTCAAGAGAACGAAAAACTTCAA
ATGATTAACAAACTTGTTGAAAAGCTTGATGGTCTAAACGCAAACAGAAA
ACAACTTGACGAAGCGTTAGTCCAAGCTAAAAACAAAAACAAGATTTTGA
AACAGCAACTCGGCATTGCACAAAAGGTCATCTTGTACAGGCTATTAACT
GGAAAATATCCACAAAAAACGTGGTTTAAAGATTCTTTTTTCTCTGCAGG
TTCCAATCAACAACATCAAAGTCATCAAAGATGAAAAACGTGTGATGATT
GAAAACTTGATTAAAAAAATTTACAACATCAAGAATGTCATCAAGAACAA
AAACCGAATGCTGGTTGAGTTAAAGAACGAAAATACCAAACTTGCGCAAG
ACATCGAGAAAGATCAAATCCTTCAACACAACGGAAAATCTATCTTGAAA
CCAAACACGAATGCCGAGACCTCTTGCTTTCTATGTTGAAATATGAACCA
CAACATCGTCCATCAATCAACGAAATTGCCAACCACCCTTGGTTTGCATC
TCAAGACGAAGAGGTTAATAAAGAAAGTCAAGAGAACGAAAAACTTCAAA
TGATTAACAAACTTGTTGAAAAGCTTGATGGTCTAAACGCAAACAGAAAA
CAACTTGACGAAGCGTTAGTCCAAGCTAAAAACAAAAACAAGATTTTGAA
ACAGCAACTCGGCATTGCACAAAAGGTCATCTTGTACAGGCTATTAACTG
GAAAATATCCACAAAAAACGTGGTTTAAAGATTCTTTTTTCTCTGCAGGT
TCCAATCAACAACATCAAAGTCATCAAAGATGAAAAACGTGTGATGATTG
AAAACTTGATTAAAAAAATTTACAACATCAAGAATGTCATCAAGAACAAA
AACCGAATGCTGGTTGAGTTAAAGAACGAAAATACCAAACTTGCGCAAGA
CATCGAGAAAGATCAAATCCTTCAACACAACGGAAAATCTATCTTGAAAC
CAAACACGAATGCCGAGACCTCTTGCTTTCTATGTTGAAATATGAACCAC
AACATCGTCCATCAATCAACGAAATTGCCAACCACCCTTGGTTTGCATCT
CAAGACGAAGAGGTTAATAAAGAAAGTCAAGAGAACGAAAAACTTCAAAT
GATTAACAAACTTGTTGAAAAGCTTGATGGTCTAAACGCAAACAGAAAAC
AACTTGACGAAGCGTTAGTCCAAGCTAAAAACAAAAACAAGATTTTGAAA
CAGCAACTCGGCATTGCACAAAAGGTCATCTTGTACAGGCTATTAACTGG
AAAATATCCACAAAAAACGTGGTTTAAAGATTCTTTTTTCTCTGCAGGTT
CCAATCAACAACATCAAAGTCATCAAAGATGAAAAACGTGTGATGATTGA
AAACTTGATTAAAAAAATTTACAACATCAAGAATGTCATCAAGAACAAAA
ACCGAATGCTGGTTGAGTTAAAGAACGAAAATACCAAACTTGCGCAAGAC
ATCGAGAAAGATCAAATCCTTCAACACAACGGAAAATCTATCTTGAAACC
AAACACGAATGCCGAGACCTCTTGCTTTCTATGTTGAAATATGAACCACA
ACATCGTCCATCAATCAACGAAATTGCCAACCACCCTTGGTTTGCATCTC
AAGACGAAGAGGTTAATAAAGAAAGTCAAGAGAACGAAAAACTTCAAATG
ATTAACAAACTTGTTGAAAAGCTTGATGGTCTAAACGCAAACAGAAAACA
ACTTGACGAAGCGTTAGTCCAAGCTAAAAACAAAAACAAGATTTTGAAAC
AGCAACTCGGCATTGCACAAAAGGTCATCTTGTACAGGCTATTAACTGGA
AAATATCCACAAAAAACGTGGTTTAAAGATTCTTTTTTCTCTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043629-exon-sc0004410-1575043694:6777..6849 | TCONS_00043629-exon-sc0004410-1575043694:6777..6849 | Clytia hemisphaerica | exon |
| TCONS_00043629-exon-sc0004410-1575043694:6335..6600 | TCONS_00043629-exon-sc0004410-1575043694:6335..6600 | Clytia hemisphaerica | exon |
| TCONS_00043629-exon-sc0004410-1575043694:5824..5871 | TCONS_00043629-exon-sc0004410-1575043694:5824..5871 | Clytia hemisphaerica | exon |
| TCONS_00043629-exon-sc0004410-1575043694:5369..5530 | TCONS_00043629-exon-sc0004410-1575043694:5369..5530 | Clytia hemisphaerica | exon |
| TCONS_00043629-exon-sc0004410-1510915933:6777..6849 | TCONS_00043629-exon-sc0004410-1510915933:6777..6849 | Clytia hemisphaerica | exon |
| TCONS_00043629-exon-sc0004410-1510915933:6335..6600 | TCONS_00043629-exon-sc0004410-1510915933:6335..6600 | Clytia hemisphaerica | exon |
| TCONS_00043629-exon-sc0004410-1510915933:5824..5871 | TCONS_00043629-exon-sc0004410-1510915933:5824..5871 | Clytia hemisphaerica | exon |
| TCONS_00043629-exon-sc0004410-1510915933:5369..5530 | TCONS_00043629-exon-sc0004410-1510915933:5369..5530 | Clytia hemisphaerica | exon |
| TCONS_00043629-exon-sc0004410-1491911889:6777..6849 | TCONS_00043629-exon-sc0004410-1491911889:6777..6849 | Clytia hemisphaerica | exon |
| TCONS_00043629-exon-sc0004410-1491911889:6335..6600 | TCONS_00043629-exon-sc0004410-1491911889:6335..6600 | Clytia hemisphaerica | exon |
| TCONS_00043629-exon-sc0004410-1491911889:5824..5871 | TCONS_00043629-exon-sc0004410-1491911889:5824..5871 | Clytia hemisphaerica | exon |
| TCONS_00043629-exon-sc0004410-1491911889:5369..5530 | TCONS_00043629-exon-sc0004410-1491911889:5369..5530 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004410 | supercontig | sc0004410:5369..6849 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011009 | Kinase-like_dom |
Blast
The following BLAST results are available for this feature:
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