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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043622 ID=TCONS_00043622|Name=TCONS_00043622|organism=Clytia hemisphaerica|type=transcript|length=617bp
TTTCGGCATACAAATTCACAAGGTGATAAGACCTTGGAACTTTTATGATT
gtaatatttttggattttattttgaCTACCATTGCTTTACGTATACAAAT
GATAGAATTTTTATTCATCTGGTAAAACGATATTTTCATTAATACAAACA
CAATGAAACGAGGTTTAACCTGGCGTGCTTCAATCAAAAGACTTCAAGCT
AAGGCTGAAAAGGCACGAGTGAAGGAGGAGAAAGAGGCGAAGAAAGCACA
ACTAGACGCTCGCCATGAATATCTTCTTGGAAATATTTCCGATGCACTTA
ATGTCGATTACAATGAAATTGTGGAACATATCATTGAAGGAACACAGATC
GAAACGATCACCAGTTTCTTTCGAGAAAACGGATCAAGATccagtttgat
ttttttctatcaaCAAATGGAAGCTACTAATGATGGAGtgGATCACATGC
GTCTTGGACACGGTGGCAATCAACTGgtcaacaaaaccaaacataaATTA
TTTCTGACTGATGGATTGGCAGAAAAATTGACTGGATTCTGTTTGTATTT
CGCTAAGatcaacaaaacaaaagaaatcactGCACAAAATATACATAATG
TAAGTAAGTTGGATCAG Run BLAST on NCBI protein sequence of TCONS_00043622-protein >TCONS_00043622-protein ID=TCONS_00043622-protein|Name=TCONS_00043622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MKRGLTWRASIKRLQAKAEKARVKEEKEAKKAQLDARHEYLLGNISDALN
VDYNEIVEHIIEGTQIETITSFFRENGSRSSLIFFYQQMEATNDGVDHMR
LGHGGNQLVNKTKHKLFLTDGLAEKLTGFCLYFAKINKTKEITAQNIHNV
SKLDQ Run BLAST on NCBI transcript from alignment at sc0004401:754..5183+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043622 ID=TCONS_00043622|Name=TCONS_00043622|organism=Clytia hemisphaerica|type=transcript|length=4430bp|location=Sequence derived from alignment at sc0004401:754..5183+ (Clytia hemisphaerica)
TTTCGGCATACAAATTCACAAGGTGATAAGACCTTGGAACTTTTATGATT
gtaatatttttggattttattttgaCTACCATTGCTTTACGTATACAAAT
GATAGAATTTTTATTCATCTGGTAAAACGATATTTTCATTAATACAAACA
CAATGAAACGAGGTTTAACCTGGCGTGCTTCAATCAAAAGACTTCAAGCT
AAGGCTGAAAAGGTAAGGGTTGATTTCACACCTATTTGTTAAAATTAGTT
TTCTGAGACTTGAGATCTAAATTACCTGCAAGATCAAAAATTTGCGGAAT
ATCAAAGCattcaattcatttttttgttcaCAGAGGAATTTGGTGAATTA
AAAATAATACCAAGAGAACAATGTACCTTGCATTTTACAAGAACGAAATA
TAAACGAATGGTCGAATAGTCCGTGTTTTGTTGAAATATTCATTGTACtt
ttttgtgcattttttgggtcgcCTATAAAATTCAGACAAAAGCTTTATTA
TTTTACCCTGGACTAGACTGGAGTAGGAATTGTCAGATAAATACACAACA
TGCTCTGTAATGTTGTTAAGATGTCACAAACCTGGTCAATCGTGTTTGAA
TTGAGAATTCTTCAGGATAACCTATTGTGAAAGCTCTCTTCAAATGGAGC
TTAGTCTTTCAGCTACCTTCAGACGAAGTGCTTTGAAAGTAAGATTAGTA
CAAtcatctctctgtaattcgagtcTCTATAATTCGTATTTTTTTTTAAC
GGTTCCTTCATCAGCTGGAAAGTCGTTTAAAATACTCCATGTAATACGAA
TTTTCCTATAACTCGAAAAGAATCCTCAATTACTTGAAGATCACaagagt
caactgtatatataaaactccagctcatctgATGGTGTTTTgcagaaaaa
ttaattttttgaattatttctgAATGTTTGATTCGTATAAAAGTAATAGT
ACAGCCACTAACTGAAATACGTATAGCTTGAAGTCCAGATTACCGCcggc
tatctacccgaaggaaGGTAGGGgtgggcgccactctttctccctggatt
gctccacttacccttgtgATGCCTTGATCCTTATTATGATATTAACTTAC
ATAATACATTaggagaaaaacttttttagtcTTCCCTAAACGTAATTTAT
TATATTCGATAAATCAtcgacaaaaaagaaaactaaCTTACAGTATTATT
ACCACAAAGTGCGTCATGCCGACCCAATCTTCAGGTATTTTTAATGTATC
ATTGGTTTTGCTTTCAACTAGTTGTTGAGAATATAAgatttattattata
aaaacaGTTTATTTCCGTTCAACAGCTTCAGGTCTCTTGATGATAGATAT
GGTCtcatccactgacctttatgtatccctggaccaagttactcaatgtc
ggccaagcaaaatattatgatcggagtttctttgaaattggtacccgcgt
agagagcgctagatctagtttcgcttgtacactaatgatgtagcgccgCT
TGTCGTTAGGCAAAGCTTCAAACATTACCATGGCTTCTTTGTGAGTAccg
actttcaaaaaaacttcgattaaagatggcggatatagcttggtccagga
ttatataaaggtcagtggtctcATCATATGTTTTGGCTGTACTGAACCTC
TTGTACAATATTATTTAAACTCTAAAGGCAGTATCTgcaataaaagttaa
aaaaaatcgaatacaaatataacataactagttaatttatttttctcaat
GGTTGagaattacatgtttttttataagaacatccaaaatttttgaagcc
tttagatgttcttaactttttcagttttaagcctaaaaatgtttttaaca
tgtttttattttcaccattttgtgaccatttttactcatattcctaagaa
atcgggtattttcgagtccgcaaagccttaaaacgttcttaacttgttct
taacattttggccatcgaagccttatgttcttatatagtttgttcttata
aaaaaacttgtagtaCTCAAGCTCAAATGAAAATGCCAGACCTAATTAAA
ACTGCTAGAACAGAATAACATGAGAGAGGGGGAACTTTAATTCTTTGCGA
TTGACGAATGTTGTTAGTTTATTGGACGCTTTACTTACGTCTCTGTTTAT
GTGTTGTTTTGCTCTATAACTTTGGTGAGGTCGCCATCAAGATTTACTTC
GTTTCTTCAAGTCTTTTGAAATTTGTCTTTCGAAATGCCACATTCAAGGG
GCTGGAAGATTTTAAACCAGAAACTTCATGAAGTATGTTTTGTTTTCTGG
Ttcctatacacgttttttttaagaaacacacttttaagaaacacgaggct
cagaatccctaaaaactaagaaacgtctaagaaacatgctgaggttgaga
atgagaaaataacattttttaaatcgtttttttttaagaaccttccaatc
aaaacaattttttttttctttgcatgaaaaataggctgattatgattata
aacaatagaattacatggaaacgaggccgggctgtatgttttaattttta
taagtgATTTCACCGTGAACATAAACAGTCATAAACATTgatagaaaaaa
gcttttgagctcaaattttcagcatgcacttgtctttataggaggaatac
aaatatatagttttcaatatgGTTTGAAGACCTTCCAAAAATACCCaaca
attcgggaaaggtgtattactttctctaattcgaagacgATTCTTGGTCC
ctcgaagatcgaattagagagagtcaactgcaCATTTCTAACAGTTTAAA
CTTCTTTCACAACGGGTTAAACTTCTTACTACAGGCACGAGTGAAGGAGG
AGAAAGAGGCGAAGAAAGCACAACTAGACGCTCGCCATGAATATCTTCTT
GGAAATATTTCCGATGCACTTAATGTCGATTACAATGAAATTGTGGAACA
TATCATTGAAGGAACACAGGTTCGTGATaccttgattttattttttttca
atcctgTTGAAGCATTATCTCTATTTCATGCAAGTCAAATTATACCACAT
CTCTTTTAAActctttatttattatttattttatgtcagtttttttcttt
gtagCTTATCATTATCAGGTACTCTTTTTCGTCTGGATATTTCCGGACTG
TTCCGGATTCTTTTTCTTTCGATTACCGATTACCGAACCAGCGTCTCTTT
AAAGCTACAGATTAAGGAAAAAAAGACTGAGTGAGTTCATCCTTTGCACA
TTTTTGGCAACATAATGAAGTTGAAAACCTATAATCTGGAACAACTGATG
GCAGTCAACTTTCATTAATTCGAACTCGAGAGGGTTGCCCCTCGACAGga
actgagaattagttcgatttatcaaagattcgaatagtagtAAGTCGAAT
TTTAGTCCActgtatttattttctttaatttctttgtTTGGTTTTTCAGA
TCGAAACGATCACCAGTTTCTTTCGAGAAAACGGATCAAGATccagtttg
atttttttctatcaaCAAATGGAAGCTACTAATGATGGAGGTTAGTAGAT
TTTGATCACTGATCTCTATTTGACTGGATCGGGCTTCTCAAATGACAGAG
GAAGCGTGTCCAGTTTTAGAGCTGAATTGTCCGCCATCTTTTTTTTGATT
CGGCTCGTTAACATCGCGAttcgaatattttgaaattcaaacgttcgaaa
atctgaTGTAAACATGCGAAATCAGCCGTTACaagaattttggatgttct
tataaacaaaaaaaacaacgtttaCCTAGAAAAAAATCTATCATGGTAAT
TCGAACAGATTCGAACGTGGTTTTGGTAGCTGAGGACCAAGATATTCTAA
CCCCGGGAGGCACTTGGCAAAAAAGGGTACGTGGATGAGCTGAGCGTCGA
GGTACTTTTCTCACATctacgagtcccaggtaggatCACAAAAACGCAAA
AGTAAAAAAGGAAGTCCCtggtagggtacctttttgggggaatttgggaa
aaaagagGAAGATTTTGtgaaacttttcgaatttaagcCATCATTCaggg
tcatttttttcaaaaaacgatTCCCACGTAGAGGGTTCATTTTTTCGGAC
CTCTGTGTCACACCCCTTCGGTTGGAAAGGGTAGTATCCCCTGGGATTCT
AACACCCGTAATGATTTCTTAAATTAAAAAGTTGTTCAgatttttggtct
ttttttaaaagtatttctTGTGGtgagttttttgttgtttttttttcata
gtgGATCACATGCGTCTTGGACACGGTGGCAATCAACTGgtcaacaaaac
caaacataaATTATTTCTGACTGATGGATTGGCAGAAAAATTGACTGGAT
TCTGTTTGTATTTCGCTAAGatcaacaaaacaaaagaaatcactGCACAA
AATATACATAATGTAAGTAAGTTGGATCAG Coding sequence (CDS) from alignment at sc0004401:754..5183+ >TCONS_00043622 ID=TCONS_00043622|Name=TCONS_00043622|organism=Clytia hemisphaerica|type=CDS|length=1860bp|location=Sequence derived from alignment at sc0004401:754..5183+ (Clytia hemisphaerica)
ATGAAACGAGGTTTAACCTGGCGTGCTTCAATCAAAAGACTTCAAGCTAA
GGCTGAAAAGGCACGAGTGAAGGAGGAGAAAGAGGCGAAGAAAGCACAAC
TAGACGCTCGCCATGAATATCTTCTTGGAAATATTTCCGATGCACTTAAT
GTCGATTACAATGAAATTGTGGAACATATCATTGAAGGAACACAGATCGA
AACGATCACCAGTTTCTTTCGAGAAAACGGATCAAGATccagtttgattt
ttttctatcaaCAAATGGAAGCTACTAATGATGGAGtgGATCACATGCGT
CTTGGACACGGTGGCAATCAACTGgtcaacaaaaccaaacataaATTATT
TCTGACTGATGGATTGGCAGAAAAATTGACTGGATTCTGTTTGTATTTCG
CTAAGatcaacaaaacaaaagaaatcactGCACAAAATATACATAATGTA
AGTAAGTTGGATCAGATGAAACGAGGTTTAACCTGGCGTGCTTCAATCAA
AAGACTTCAAGCTAAGGCTGAAAAGGCACGAGTGAAGGAGGAGAAAGAGG
CGAAGAAAGCACAACTAGACGCTCGCCATGAATATCTTCTTGGAAATATT
TCCGATGCACTTAATGTCGATTACAATGAAATTGTGGAACATATCATTGA
AGGAACACAGATCGAAACGATCACCAGTTTCTTTCGAGAAAACGGATCAA
GATccagtttgatttttttctatcaaCAAATGGAAGCTACTAATGATGGA
GtgGATCACATGCGTCTTGGACACGGTGGCAATCAACTGgtcaacaaaac
caaacataaATTATTTCTGACTGATGGATTGGCAGAAAAATTGACTGGAT
TCTGTTTGTATTTCGCTAAGatcaacaaaacaaaagaaatcactGCACAA
AATATACATAATGTAAGTAAGTTGGATCAGATGAAACGAGGTTTAACCTG
GCGTGCTTCAATCAAAAGACTTCAAGCTAAGGCTGAAAAGGCACGAGTGA
AGGAGGAGAAAGAGGCGAAGAAAGCACAACTAGACGCTCGCCATGAATAT
CTTCTTGGAAATATTTCCGATGCACTTAATGTCGATTACAATGAAATTGT
GGAACATATCATTGAAGGAACACAGATCGAAACGATCACCAGTTTCTTTC
GAGAAAACGGATCAAGATccagtttgatttttttctatcaaCAAATGGAA
GCTACTAATGATGGAGtgGATCACATGCGTCTTGGACACGGTGGCAATCA
ACTGgtcaacaaaaccaaacataaATTATTTCTGACTGATGGATTGGCAG
AAAAATTGACTGGATTCTGTTTGTATTTCGCTAAGatcaacaaaacaaaa
gaaatcactGCACAAAATATACATAATGTAAGTAAGTTGGATCAGATGAA
ACGAGGTTTAACCTGGCGTGCTTCAATCAAAAGACTTCAAGCTAAGGCTG
AAAAGGCACGAGTGAAGGAGGAGAAAGAGGCGAAGAAAGCACAACTAGAC
GCTCGCCATGAATATCTTCTTGGAAATATTTCCGATGCACTTAATGTCGA
TTACAATGAAATTGTGGAACATATCATTGAAGGAACACAGATCGAAACGA
TCACCAGTTTCTTTCGAGAAAACGGATCAAGATccagtttgatttttttc
tatcaaCAAATGGAAGCTACTAATGATGGAGtgGATCACATGCGTCTTGG
ACACGGTGGCAATCAACTGgtcaacaaaaccaaacataaATTATTTCTGA
CTGATGGATTGGCAGAAAAATTGACTGGATTCTGTTTGTATTTCGCTAAG
atcaacaaaacaaaagaaatcactGCACAAAATATACATAATGTAAGTAA
GTTGGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043622-exon-sc0004401-1491911889:754..965 | TCONS_00043622-exon-sc0004401-1491911889:754..965 | Clytia hemisphaerica | exon |
| TCONS_00043622-exon-sc0004401-1510915933:754..965 | TCONS_00043622-exon-sc0004401-1510915933:754..965 | Clytia hemisphaerica | exon |
| TCONS_00043622-exon-sc0004401-1575043694:754..965 | TCONS_00043622-exon-sc0004401-1575043694:754..965 | Clytia hemisphaerica | exon |
| TCONS_00043622-exon-sc0004401-1491911889:3588..3722 | TCONS_00043622-exon-sc0004401-1491911889:3588..3722 | Clytia hemisphaerica | exon |
| TCONS_00043622-exon-sc0004401-1510915933:3588..3722 | TCONS_00043622-exon-sc0004401-1510915933:3588..3722 | Clytia hemisphaerica | exon |
| TCONS_00043622-exon-sc0004401-1575043694:3588..3722 | TCONS_00043622-exon-sc0004401-1575043694:3588..3722 | Clytia hemisphaerica | exon |
| TCONS_00043622-exon-sc0004401-1491911889:4203..4293 | TCONS_00043622-exon-sc0004401-1491911889:4203..4293 | Clytia hemisphaerica | exon |
| TCONS_00043622-exon-sc0004401-1510915933:4203..4293 | TCONS_00043622-exon-sc0004401-1510915933:4203..4293 | Clytia hemisphaerica | exon |
| TCONS_00043622-exon-sc0004401-1575043694:4203..4293 | TCONS_00043622-exon-sc0004401-1575043694:4203..4293 | Clytia hemisphaerica | exon |
| TCONS_00043622-exon-sc0004401-1491911889:5005..5183 | TCONS_00043622-exon-sc0004401-1491911889:5005..5183 | Clytia hemisphaerica | exon |
| TCONS_00043622-exon-sc0004401-1510915933:5005..5183 | TCONS_00043622-exon-sc0004401-1510915933:5005..5183 | Clytia hemisphaerica | exon |
| TCONS_00043622-exon-sc0004401-1575043694:5005..5183 | TCONS_00043622-exon-sc0004401-1575043694:5005..5183 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004401 | supercontig | sc0004401:754..5183 + |
Blast
BLAST of TCONS_00043622 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 5.614e-16 Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = 3
Query: 252 LDARHEYLLGNISDALNVDYNEIVEHIIEGTQIETITSFFRENGSRSSLIFFYQQMEATNDGVDHMRLGH-GGNQLVNK--TKHKLFLTDGLAEKLTGFCLYFAKINKTKEITAQNIH 596
LDARH YL ++ L+++ E+ + I+EG QIE I F G R L+F+YQ +E G +LG GG LV+ K K+F+T+G LTG C++F + + +K IT NIH
Sbjct: 33 LDARHNYLFAIVASCLDLNKTEVEDAILEGNQIERIDQLFAVGGLR-HLMFYYQDVEEAETG----QLGSLGGVNLVSGKIKKPKVFVTEGNDVALTGVCVFFIRTDPSKAITPDNIH 145
The following BLAST results are available for this feature:
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