TCONS_00043585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043585
Unique NameTCONS_00043585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043585 ID=TCONS_00043585|Name=TCONS_00043585|organism=Clytia hemisphaerica|type=transcript|length=306bp
CCACGATTTGTCTGAGTTTTGCTCTGGAATCTTTGATTTTACGTACATAA
TCTCTGATTGATTGAAGAGATGCTTTTGTTGAGGCGAGAAGCTTGTGATC
TGGGTTTTCGGCATGGATTGCGTTCTCGTTTTCTCTGAGGAGCAAACGTA
GCCCCATCTATGTCGGCCAACGTGGAGGTGGGATTCTCCTCAATGACATC
GGTGACCTCTTGAATGGCAATTTTCGTTCAATTTATTATTTCGTATTGac
gtttgatttggtttgattaCACGTTTCCCAGTTGAGTGGAGAATTTGATA
GTCGAT
Run BLAST on NCBI

transcript from alignment at sc0004366:7004..7309

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043585 ID=TCONS_00043585|Name=TCONS_00043585|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at sc0004366:7004..7309 (Clytia hemisphaerica)
ATCGACTATCAAATTCTCCACTCAACTGGGAAACGTGtaatcaaaccaaa
tcaaacgtCAATACGAAATAATAAATTGAACGAAAATTGCCATTCAAGAG
GTCACCGATGTCATTGAGGAGAATCCCACCTCCACGTTGGCCGACATAGA
TGGGGCTACGTTTGCTCCTCAGAGAAAACGAGAACGCAATCCATGCCGAA
AACCCAGATCACAAGCTTCTCGCCTCAACAAAAGCATCTCTTCAATCAAT
CAGAGATTATGTACGTAAAATCAAAGATTCCAGAGCAAAACTCAGACAAA
TCGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027272XLOC_027272Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043585-exon-sc0004366-1491911889:7004..7309TCONS_00043585-exon-sc0004366-1491911889:7004..7309Clytia hemisphaericaexon
TCONS_00043585-exon-sc0004366-1510915933:7004..7309TCONS_00043585-exon-sc0004366-1510915933:7004..7309Clytia hemisphaericaexon
TCONS_00043585-exon-sc0004366-1575043694:7004..7309TCONS_00043585-exon-sc0004366-1575043694:7004..7309Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004366supercontigsc0004366:7004..7309 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46198	2.85132	2.48299	0.809739	4.9289	1.94744	3.75921	2.63949	0.61599	1.1445	0	0.363568	0.486158	0.50488	0	0.222722	0.274375	0.562452	0	0.813134	0	1.0342	0	0.380994	0.78483	0.350221	0	0.534857	0.811341	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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