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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043552 ID=TCONS_00043552|Name=TCONS_00043552|organism=Clytia hemisphaerica|type=transcript|length=2558bp
GGAGTTTCGCGATGATCGTCAAAAATAAgatctaaaatatttccatcaAT
ATGTGTTGGATGTTCGCATCTTTGATGAAAGATATTTGGTGGTAATGCTT
CATTGACGATTTCTTTGTTGTCAGGTAAATTGAAATCACCAAGAACAatg
gttgaaaaattttccgcatTAATCTGTCCCCGTATATTATCAAGCTCAAT
TTGAAGAGATTGTGCAAATAAAGGAACAGAGCTCGTTGGAGGTCTAtata
tcaaaacaatcaaataatATTTGTCGTTTATGCTTACCAAAAGTGGAAGT
AATTCTAATTCACTAACAGTGTTCAGTTCTTTTATCACATTTACTTGATT
TGTATCGTAACTGATTGCTAAGCCATGCATGGGCAGTTCTCTGATGAATT
NCTTGTCACTCGATGTTGCGCGAGACAGAAGTGTATAAAGTAATCCTGGT
CCAACTGGTGCTAATCCTTTTCCGCTTCTAGTCGTTTGATCTAAATCTCC
ACTGGCATATTCTAATGTGCTACCTTGTGCTTTATGTATTGTTGTAGCAA
AAGCTACGATTAATGGAAATTGCTTTCTTGTCacataaatatttttcgat
GTTCTGAATGTTTTTACTTCTGGTTGAACGGGAACACACGTTTTCAATTC
TCCTTTCAATCTtgcatttttcaatttatttccaGATAAAGGGTTGTCAA
ATTGAACATAAATAACGCCACATGGTTTGTTATCTCTTAAGCCTTGGATA
TGTTTCACTATTCCAGTAGATCCGTTGATCAATTTATCCTCTACATCTTT
GTTAATTGTAAGCATAACCCTAGCACCAACACATAATATTAATTCTTTTG
GAAGTCCTGCAGTTTTGTTAATCGGAACATATTTATTCAAAGTTACTTTT
TGTCTTGATTCATCCTTAGCTATTGAAGTGCGTTTATTATCCCAATCCTG
TAAAGATTTTAAGCTCTTTTCATTTTGTTGGTCTTTCAAGTTGTTTGTGA
TGTACATTTTCATGAAGTTCTCAGGCCATTCAGTTGTATCAGTATGTTCG
AATGACTGAATTTTTTCAATATCAGCTTGCGTATGATTTCCTTCTCGAAG
CCTGTTAAGTAATGCAGCAAATTCTGAATCTCCACTTTGTCTCACAATTT
CGTCCAGTTCATAAAGTTTGAATTCTTCCCAAGCATAGTCAAGTTTTGTC
TTGTATATTGAGTTTTGTTTAATAGGTGGTAATTGAAAGAAATCACCGAT
CAATAACAATGCAACCTCGCCAAATGGTTCTTTGATTTGTTTAATTTCTT
GTAATCGTCTATTTAGATCGTCAAAACTCCTTTTTCCAATCATTGAAATC
TCATCAATCAATAAAACCTTTAAATATTTGAATTTCAACCTCAATTCATG
TAAGGCATTTCCAGTTAAATCTCGTTTTTGCATTATTCCTCTTCCTTCAT
CATAAATTGGTAACACGAAAGCTGAATGCAAAGTAGTACCGTCAACATTT
GCTGCCGCTTTACCGGTTGATGCTGTCACAAAAACAGATGGTTCTCTATC
AATATTTTGTCCTGGTTCTTTCAGAATCTTTTTAAGTTGTTCAGTCAAAC
ACTTTATTAAGAAACTTTTTCCAACTCCTGCACCGCCACTTAAAAACAGT
CTAAATGGATTTGGTTTTTCAATTGATGGCATTTTTTCGGAAAATTTGAG
AGTCAGTACATATTTGAAGACAAAATTGAAAAAGTTTTGCTGTTTTACAT
TTAAGTTGAAGCACATGTTGTAGAATCTATCAAGAGATATAGTAGGATTT
TGGTCAGATGTCGTAAAAGGTACTGAAGTAGTTTCATTAGTTGCATCCTG
GGCATCATTTTCATAATCTAAATCAATCAAATCCGGATGAATAATTCGAT
AATCATCATCTTGTTCGTCGTCACTACTTTCCGAATCAGAACTGTCATAG
ACATGTATATCATTTAAATCAACGTCATTGTTTCTGCCAAAATAAGGATC
ATGCTTTAgaatatttggtttgatttcctCTTCGACTTCATTGAATTTCT
CTTCGAAGGTATCACAGTTTCCTTTcaagtcattttcattttcccagggC
ATGAATAATTGGAGGAGTACCATGAAATATTCGTTCCTCTCTTTGAGTTT
GCTGACCTTGTGATAACGTATTACGCATGGACGACTtcgttttctcattt
ttcccaTTCCGTTTTTCAATGTAATAGTTTTTGGAGCATTGTCATATATT
TCTAGAGtttcatttatttcatcatCTGTTTCGTTTGCGNACATTGCCAA
CAGCACGTAATTTATCTTTTACATCTTTTCCGGATGCTTCTTTGTGTGCC
TTTTTCATGAGTTCACTCATATTTCTTTCTGGTTTGCACATGTAAGAAGT
AATATAAGCTAACACTGCATACATGTTTGTTACATACTGAATATTCATGT
TGGATTGTAAGATACTGATCATGACAGTATTGTATGGACCGATATTAGTT
TCATTTGGACTTCTTTTATAGAGCACTGTTAGTTTCTTTTGAACCATGTT
TAAAGCGG Run BLAST on NCBI protein sequence of TCONS_00043552-protein >TCONS_00043552-protein ID=TCONS_00043552-protein|Name=TCONS_00043552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=764bp
MXANETDDEINETLEIYDNAPKTITLKNGMGKMRKRSRPCVIRYHKVSKL
KERNEYFMVLLQLFMPWENENDLKGNCDTFEEKFNEVEEEIKPNILKHDP
YFGRNNDVDLNDIHVYDSSDSESSDDEQDDDYRIIHPDLIDLDYENDAQD
ATNETTSVPFTTSDQNPTISLDRFYNMCFNLNVKQQNFFNFVFKYVLTLK
FSEKMPSIEKPNPFRLFLSGGAGVGKSFLIKCLTEQLKKILKEPGQNIDR
EPSVFVTASTGKAAANVDGTTLHSAFVLPIYDEGRGIMQKRDLTGNALHE
LRLKFKYLKVLLIDEISMIGKRSFDDLNRRLQEIKQIKEPFGEVALLLIG
DFFQLPPIKQNSIYKTKLDYAWEEFKLYELDEIVRQSGDSEFAALLNRLR
EGNHTQADIEKIQSFEHTDTTEWPENFMKMYITNNLKDQQNEKSLKSLQD
WDNKRTSIAKDESRQKVTLNKYVPINKTAGLPKELILCVGARVMLTINKD
VEDKLINGSTGIVKHIQGLRDNKPCGVIYVQFDNPLSGNKLKNARLKGEL
KTCVPVQPEVKTFRTSKNIYVTRKQFPLIVAFATTIHKAQGSTLEYASGD
LDQTTRSGKGLAPVGPGLLYTLLSRATSSDKXFIRELPMHGLAISYDTNQ
VNVIKELNTVSELELLPLLVSINDKYYLIVLIYRPPTSSVPLFAQSLQIE
LDNIRGQINAENFSTIVLGDFNLPDNKEIVNEALPPNIFHQRCEHPTHID
GNILDLIFDDHRET Run BLAST on NCBI transcript from alignment at sc0004340:1..2558 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043552 ID=TCONS_00043552|Name=TCONS_00043552|organism=Clytia hemisphaerica|type=transcript|length=2558bp|location=Sequence derived from alignment at sc0004340:1..2558 (Clytia hemisphaerica)
CCGCTTTAAACATGGTTCAAAAGAAACTAACAGTGCTCTATAAAAGAAGT
CCAAATGAAACTAATATCGGTCCATACAATACTGTCATGATCAGTATCTT
ACAATCCAACATGAATATTCAGTATGTAACAAACATGTATGCAGTGTTAG
CTTATATTACTTCTTACATGTGCAAACCAGAAAGAAATATGAGTGAACTC
ATGAAAAAGGCACACAAAGAAGCATCCGGAAAAGATGTAAAAGATAAATT
ACGTGCTGTTGGCAATGTNCGCAAACGAAACAGatgatgaaataaatgaa
aCTCTAGAAATATATGACAATGCTCCAAAAACTATTACATTGAAAAACGG
AAtgggaaaaatgagaaaacgaAGTCGTCCATGCGTAATACGTTATCACA
AGGTCAGCAAACTCAAAGAGAGGAACGAATATTTCATGGTACTCCTCCAA
TTATTCATGccctgggaaaatgaaaatgacttgAAAGGAAACTGTGATAC
CTTCGAAGAGAAATTCAATGAAGTCGAAGaggaaatcaaaccaaatattc
TAAAGCATGATCCTTATTTTGGCAGAAACAATGACGTTGATTTAAATGAT
ATACATGTCTATGACAGTTCTGATTCGGAAAGTAGTGACGACGAACAAGA
TGATGATTATCGAATTATTCATCCGGATTTGATTGATTTAGATTATGAAA
ATGATGCCCAGGATGCAACTAATGAAACTACTTCAGTACCTTTTACGACA
TCTGACCAAAATCCTACTATATCTCTTGATAGATTCTACAACATGTGCTT
CAACTTAAATGTAAAACAGCAAAACTTTTTCAATTTTGTCTTCAAATATG
TACTGACTCTCAAATTTTCCGAAAAAATGCCATCAATTGAAAAACCAAAT
CCATTTAGACTGTTTTTAAGTGGCGGTGCAGGAGTTGGAAAAAGTTTCTT
AATAAAGTGTTTGACTGAACAACTTAAAAAGATTCTGAAAGAACCAGGAC
AAAATATTGATAGAGAACCATCTGTTTTTGTGACAGCATCAACCGGTAAA
GCGGCAGCAAATGTTGACGGTACTACTTTGCATTCAGCTTTCGTGTTACC
AATTTATGATGAAGGAAGAGGAATAATGCAAAAACGAGATTTAACTGGAA
ATGCCTTACATGAATTGAGGTTGAAATTCAAATATTTAAAGGTTTTATTG
ATTGATGAGATTTCAATGATTGGAAAAAGGAGTTTTGACGATCTAAATAG
ACGATTACAAGAAATTAAACAAATCAAAGAACCATTTGGCGAGGTTGCAT
TGTTATTGATCGGTGATTTCTTTCAATTACCACCTATTAAACAAAACTCA
ATATACAAGACAAAACTTGACTATGCTTGGGAAGAATTCAAACTTTATGA
ACTGGACGAAATTGTGAGACAAAGTGGAGATTCAGAATTTGCTGCATTAC
TTAACAGGCTTCGAGAAGGAAATCATACGCAAGCTGATATTGAAAAAATT
CAGTCATTCGAACATACTGATACAACTGAATGGCCTGAGAACTTCATGAA
AATGTACATCACAAACAACTTGAAAGACCAACAAAATGAAAAGAGCTTAA
AATCTTTACAGGATTGGGATAATAAACGCACTTCAATAGCTAAGGATGAA
TCAAGACAAAAAGTAACTTTGAATAAATATGTTCCGATTAACAAAACTGC
AGGACTTCCAAAAGAATTAATATTATGTGTTGGTGCTAGGGTTATGCTTA
CAATTAACAAAGATGTAGAGGATAAATTGATCAACGGATCTACTGGAATA
GTGAAACATATCCAAGGCTTAAGAGATAACAAACCATGTGGCGTTATTTA
TGTTCAATTTGACAACCCTTTATCtggaaataaattgaaaaatgcaAGAT
TGAAAGGAGAATTGAAAACGTGTGTTCCCGTTCAACCAGAAGTAAAAACA
TTCAGAACatcgaaaaatatttatgtGACAAGAAAGCAATTTCCATTAAT
CGTAGCTTTTGCTACAACAATACATAAAGCACAAGGTAGCACATTAGAAT
ATGCCAGTGGAGATTTAGATCAAACGACTAGAAGCGGAAAAGGATTAGCA
CCAGTTGGACCAGGATTACTTTATACACTTCTGTCTCGCGCAACATCGAG
TGACAAGNAATTCATCAGAGAACTGCCCATGCATGGCTTAGCAATCAGTT
ACGATACAAATCAAGTAAATGTGATAAAAGAACTGAACACTGTTAGTGAA
TTAGAATTACTTCCACTTTTGGTAAGCATAAACGACAAATattatttgat
tgttttgatataTAGACCTCCAACGAGCTCTGTTCCTTTATTTGCACAAT
CTCTTCAAATTGAGCTTGATAATATACGGGGACAGATTAatgcggaaaat
ttttcaaccatTGTTCTTGGTGATTTCAATTTACCTGACAACAAAGAAAT
CGTCAATGAAGCATTACCACCAAATATCTTTCATCAAAGATGCGAACATC
CAACACATATtgatggaaatattttagatcTTATTTTTGACGATCATCGC
GAAACTCC Coding sequence (CDS) from alignment at sc0004340:1..2558 >TCONS_00043552 ID=TCONS_00043552|Name=TCONS_00043552|organism=Clytia hemisphaerica|type=CDS|length=2292bp|location=Sequence derived from alignment at sc0004340:1..2558 (Clytia hemisphaerica)
ATGTNCGCAAACGAAACAGatgatgaaataaatgaaaCTCTAGAAATATA
TGACAATGCTCCAAAAACTATTACATTGAAAAACGGAAtgggaaaaatga
gaaaacgaAGTCGTCCATGCGTAATACGTTATCACAAGGTCAGCAAACTC
AAAGAGAGGAACGAATATTTCATGGTACTCCTCCAATTATTCATGccctg
ggaaaatgaaaatgacttgAAAGGAAACTGTGATACCTTCGAAGAGAAAT
TCAATGAAGTCGAAGaggaaatcaaaccaaatattcTAAAGCATGATCCT
TATTTTGGCAGAAACAATGACGTTGATTTAAATGATATACATGTCTATGA
CAGTTCTGATTCGGAAAGTAGTGACGACGAACAAGATGATGATTATCGAA
TTATTCATCCGGATTTGATTGATTTAGATTATGAAAATGATGCCCAGGAT
GCAACTAATGAAACTACTTCAGTACCTTTTACGACATCTGACCAAAATCC
TACTATATCTCTTGATAGATTCTACAACATGTGCTTCAACTTAAATGTAA
AACAGCAAAACTTTTTCAATTTTGTCTTCAAATATGTACTGACTCTCAAA
TTTTCCGAAAAAATGCCATCAATTGAAAAACCAAATCCATTTAGACTGTT
TTTAAGTGGCGGTGCAGGAGTTGGAAAAAGTTTCTTAATAAAGTGTTTGA
CTGAACAACTTAAAAAGATTCTGAAAGAACCAGGACAAAATATTGATAGA
GAACCATCTGTTTTTGTGACAGCATCAACCGGTAAAGCGGCAGCAAATGT
TGACGGTACTACTTTGCATTCAGCTTTCGTGTTACCAATTTATGATGAAG
GAAGAGGAATAATGCAAAAACGAGATTTAACTGGAAATGCCTTACATGAA
TTGAGGTTGAAATTCAAATATTTAAAGGTTTTATTGATTGATGAGATTTC
AATGATTGGAAAAAGGAGTTTTGACGATCTAAATAGACGATTACAAGAAA
TTAAACAAATCAAAGAACCATTTGGCGAGGTTGCATTGTTATTGATCGGT
GATTTCTTTCAATTACCACCTATTAAACAAAACTCAATATACAAGACAAA
ACTTGACTATGCTTGGGAAGAATTCAAACTTTATGAACTGGACGAAATTG
TGAGACAAAGTGGAGATTCAGAATTTGCTGCATTACTTAACAGGCTTCGA
GAAGGAAATCATACGCAAGCTGATATTGAAAAAATTCAGTCATTCGAACA
TACTGATACAACTGAATGGCCTGAGAACTTCATGAAAATGTACATCACAA
ACAACTTGAAAGACCAACAAAATGAAAAGAGCTTAAAATCTTTACAGGAT
TGGGATAATAAACGCACTTCAATAGCTAAGGATGAATCAAGACAAAAAGT
AACTTTGAATAAATATGTTCCGATTAACAAAACTGCAGGACTTCCAAAAG
AATTAATATTATGTGTTGGTGCTAGGGTTATGCTTACAATTAACAAAGAT
GTAGAGGATAAATTGATCAACGGATCTACTGGAATAGTGAAACATATCCA
AGGCTTAAGAGATAACAAACCATGTGGCGTTATTTATGTTCAATTTGACA
ACCCTTTATCtggaaataaattgaaaaatgcaAGATTGAAAGGAGAATTG
AAAACGTGTGTTCCCGTTCAACCAGAAGTAAAAACATTCAGAACatcgaa
aaatatttatgtGACAAGAAAGCAATTTCCATTAATCGTAGCTTTTGCTA
CAACAATACATAAAGCACAAGGTAGCACATTAGAATATGCCAGTGGAGAT
TTAGATCAAACGACTAGAAGCGGAAAAGGATTAGCACCAGTTGGACCAGG
ATTACTTTATACACTTCTGTCTCGCGCAACATCGAGTGACAAGNAATTCA
TCAGAGAACTGCCCATGCATGGCTTAGCAATCAGTTACGATACAAATCAA
GTAAATGTGATAAAAGAACTGAACACTGTTAGTGAATTAGAATTACTTCC
ACTTTTGGTAAGCATAAACGACAAATattatttgattgttttgatataTA
GACCTCCAACGAGCTCTGTTCCTTTATTTGCACAATCTCTTCAAATTGAG
CTTGATAATATACGGGGACAGATTAatgcggaaaatttttcaaccatTGT
TCTTGGTGATTTCAATTTACCTGACAACAAAGAAATCGTCAATGAAGCAT
TACCACCAAATATCTTTCATCAAAGATGCGAACATCCAACACATATtgat
ggaaatattttagatcTTATTTTTGACGATCATCGCGAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043552-exon-sc0004340-1491911889:1..2558 | TCONS_00043552-exon-sc0004340-1491911889:1..2558 | Clytia hemisphaerica | exon |
| TCONS_00043552-exon-sc0004340-1510915933:1..2558 | TCONS_00043552-exon-sc0004340-1510915933:1..2558 | Clytia hemisphaerica | exon |
| TCONS_00043552-exon-sc0004340-1575043694:1..2558 | TCONS_00043552-exon-sc0004340-1575043694:1..2558 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004340 | supercontig | sc0004340:1..2558 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
BLAST of TCONS_00043552 vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 2.407e-27 Identity = 118/433 (27.25%), Postives = 187/433 (43.19%), Query Frame = -1
Query: 411 LFLSGGAGVGKSFLIKCLTEQLKKILKEPGQNIDREPSVFVTASTGKAAANVDGTTLHSAFVLPIYDEGRGIMQKRDLTGNALHE---LRLKFKYLKVLLIDEISMIGKRSFDDLNRRLQEIKQIKEPFGEVALLLIGDFFQLPPIKQNS-----IYKTKLDYAWEEF--KLYELDEIVRQSGDSEFAALLNRLREGNHTQADIEKIQSFEHTDTTEWPENFMKMYITNNLKDQQNEKSL---KSLQDWDNKRTSIAKDESRQKV--TLNKYVPINKTAGLPKELILCVGARVMLTINKDVEDKLINGSTGIVKHIQGLRDNKP-----CGVIYVQFDNPLSGNKLKNARLKGELKTCVPVQPEVKTFRTSKNIYVTRKQFPLIVAFATTIHKAQGSTLEYASGDLDQTTRSGKGLAPVGPGLLYTLLSRATS 1649
+F +G AG GKS+L+K + L TASTG AA ++ GTTLH AF G G Q AL + +R + + L+IDEISM+ FD L + ++Q +PFG + L++ GDF QLPP+ + S +++K +W+ EL ++ RQ+ D F +LL +R G + ++Q+ + L Q++ +L + LQ+ K +S ++ TL+ P+++ L L +GA+VML N V L+NG+ G+V + P CGV V + + T + + ++R+Q PL +A+A +IHK+QG TL+ L + SG+ Y LSRA S
Sbjct: 224 IFFTGSAGTGKSYLLKRILGSLPPT------------GTVATASTGVAACHIGGTTLH-AFA------GIGSGQAPLAQCVALAQRPGVRQGWLNCQRLVIDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFCFQSK---SWKRCVPVTLELTKVWRQA-DQTFISLLQAVRLGRCSDEVTRQLQATASHKVGR------DGIVATRLCTHQDDVALTNERRLQELPGKVHRFEAMDSNPELASTLDAQCPVSQL------LQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGRGLPQVRFLCGVTEV-------------------------IHADRWTVQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQA---------YVALSRARS 587
The following BLAST results are available for this feature:
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