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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043550 ID=TCONS_00043550|Name=TCONS_00043550|organism=Clytia hemisphaerica|type=transcript|length=1499bp
TCCTTGTATTTATTTCAGGCAATATAACAGCAGAGGACAAATGTGGACGA
CCTTTAGGTTTACAATTTGATCGTGACCAGGAAAATCTCATTATTTGTGA
CGCTTACATTGGTTTACTAAAATACAACTTAAAAGCTGGGGAACTTACAA
CATTAATTTCTGCTGCCAAAGGAGTCAACGATGTTCCATTCAAATTTGTC
AACCACTTAACCATCTCCAGTAGCAATAAAGTCTATTTTACAGACTCGAG
TTGGAAATGGCAGAGGCGTGATTTTCCATACATGATCTTGGAGGGCGGTG
GTCAAGGGCGTTTAATTAGTTATGATATAGAGACAAAACAAAGTGAAGTA
CTGATGGATGGGTTGTTTTTTCCGAATGGAATTGCGTTATCCCCCGATGA
GGAATTTGTTGTAGTATGTGAAACCACAGCTAGTCGAATTATGAGGTTAT
TTTTGAAAGGCTCAAGAAAAGGAATTTATGATCTCTTCTCCGACAATCTT
CCAGGGGCGCCTGATAATATCCGCCCTTCTAAAGATGGTGGTTATTGGGT
AGCCTTGCCATCTATCAGAAAATGGCCGTTCTCGTTCTTGGATTCGGTTG
GACCTTATCCTAACCTGAAATCAGCTATCGCTAAGCTTCTCCCTAAAGAG
ACGTTCCACGGTCTAATCAAGAAATACGGGTTGATGATTAAGCTTGATTA
CTACGGCGATATCATTAAGAGTTATCACGATCCCGATGGTTCGGTCATAA
CGCATATTTCGGAAGTTTATGAAGATCCTAACGATCATAACATCTTGTAT
TTTGGATCCTTCAAAAATGACTTTATTGGAAAATTAAGATTGAATAGTAA
GCAAACTGACCTTTGAAAATCTACATTTGCTTTTTGACTTGGCTTTGTTG
ATGGAGTTTTGGATACAGACTTTTAACCGGTGTCACAGGAAATAAGTACT
CCCCGAAAAAAGTACTCCTCAGTACTTATTTCCCAGGAGATAAGTACTCC
CCAGTACAAATTTCCTAGGAGATAGGTACTCCTAGGGGTActtatttcct
aggaaatttgTACTGGGGAGTACTCCCTTACTGGGGGTACAAATTTCCTA
GAGGGGGTATCAATTTCCTAGGAAAAATGTACTGGGGAGTATGTTTTTCC
TGGGAAAAATGTACTCCGGGAGTACTTTTTTCCAGGGAGTACTTATTTTT
CGTTACACCGGTGCCTACTACTATGTGTGCTATGATGCGTCATAgattta
ttttattgaaaatccaGAAACAACTTACACTTACACCGTGCTAAGACAAT
AGAATAGGGGAAAAACGGACAGATTTTAGGTTTATgtgtttattttcaaa
gaacttTGTCGAAATTCTTAAATTATGgccttcaaaatcaaaatttttgg
ttaATTTCACAAATCACAACGAACAAACTTGTTAGAATTGTAGAATTTTC
TACGGCTCTTTTATACGATtattaaaaagtttatttttactTTCCCGCA Run BLAST on NCBI protein sequence of TCONS_00043550-protein >TCONS_00043550-protein ID=TCONS_00043550-protein|Name=TCONS_00043550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
LVFISGNITAEDKCGRPLGLQFDRDQENLIICDAYIGLLKYNLKAGELTT
LISAAKGVNDVPFKFVNHLTISSSNKVYFTDSSWKWQRRDFPYMILEGGG
QGRLISYDIETKQSEVLMDGLFFPNGIALSPDEEFVVVCETTASRIMRLF
LKGSRKGIYDLFSDNLPGAPDNIRPSKDGGYWVALPSIRKWPFSFLDSVG
PYPNLKSAIAKLLPKETFHGLIKKYGLMIKLDYYGDIIKSYHDPDGSVIT
HISEVYEDPNDHNILYFGSFKNDFIGKLRLNSKQTDL Run BLAST on NCBI transcript from alignment at sc0004339:3356..5614+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043550 ID=TCONS_00043550|Name=TCONS_00043550|organism=Clytia hemisphaerica|type=transcript|length=2259bp|location=Sequence derived from alignment at sc0004339:3356..5614+ (Clytia hemisphaerica)
TCCTTGTATTTATTTCAGGCAATATAACAGCAGAGGACAAATGTGGACGA
CCTTTAGGTTTACAATTTGATCGTGACCAGGAAAATCTCATTATTTGTGA
CGCTTACATTGGTTTACTAAAATACAACTTAAAAGCTGGGGAACTTACAA
CATTAATTTCTGCTGCCAAAGGAGTCAACGATGTTCCATTCAAATTTGTC
AACCACTTAACCATCTCCAGTAGCAATAAAGTCTATTTTACAGACTCGAG
TTGGAAATGGCAGAGGCGTGATTTTCCATACATGATCTTGGAGGGCGGTG
GTCAAGGGCGTTTAATTAGTTATGATATAGAGACAAAACAAAGTGAAGTA
CTGATGGATGGGTTGTTTTTTCCGAATGGAATTGCGTTATCCCCCGATGA
GGAATTTGTTGTAGTATGTGAAACCACAGCTAGTCGAATTATGAGGTATT
TTTTATTCTtggacttttttgttttaatttaccctgaaaatatcaaatag
aactattttcaatattctTTGCACTGAGGTAGCTAAgggatacacgcttt
tttttataagaatagtgtactttggttgagggtgagcattattcttattt
ttctattgttctaaacaataggcctattgttttaaacccgaaatctcacc
ctgatattcttatagaagttattcttataaaagaaaaagcgtgtatctat
TCTCGAGTTTGAGGAGTTTACTATCTCTTTTACTCTATTCCTTACTACAA
TGAAATTTAAATAATTCAACTGGGGTTAATTAGACCCACTTGGGCACTGA
GAAAGGGTTGATTTTAGTTGCATTCATCATGAAAGTTCTGATCTTATTGA
TAAATTCACTCTGAAAATCCTTCCAAAGTGGGTGGTCCGTAGTTTTTACA
AGGAGTGTTGGTCAGAAAAGGTACTTTGTATGTATTGCAGAAATAAACAG
CCAAGCATTGACTTATTACTCTTTACTCTCATTCTAGGTTATTTTTGAAA
GGCTCAAGAAAAGGAATTTATGATCTCTTCTCCGACAATCTTCCAGGGGC
GCCTGATAATATCCGCCCTTCTAAAGATGGTGGTTATTGGGTAGCCTTGC
CATCTATCAGAAAATGGCCGTTCTCGTTCTTGGATTCGGTTGGACCTTAT
CCTAACCTGAAATCAGCTATCGCTAAGGTATgagaaaaatttgatatttt
catcaaGTCTCTGTGGTATCTTCAATAACCGACCTTCTTTAATAAATAGC
GTCGTCGAGACCACTCTATTCCTTTATAAGGTGATAGATATCTCAGTAAT
CATTTCAAAATGAGGCAAGTGTTGTTTTTGGCGTAAAGTTTAAAACCTCT
atccaaaatatatttcaatatgCCATTTTGTTTTCTCATTTGCAGCTTCT
CCCTAAAGAGACGTTCCACGGTCTAATCAAGAAATACGGGTTGATGATTA
AGCTTGATTACTACGGCGATATCATTAAGAGTTATCACGATCCCGATGGT
TCGGTCATAACGCATATTTCGGAAGTTTATGAAGATCCTAACGATCATAA
CATCTTGTATTTTGGATCCTTCAAAAATGACTTTATTGGAAAATTAAGAT
TGAATAGTAAGCAAACTGACCTTTGAAAATCTACATTTGCTTTTTGACTT
GGCTTTGTTGATGGAGTTTTGGATACAGACTTTTAACCGGTGTCACAGGA
AATAAGTACTCCCCGAAAAAAGTACTCCTCAGTACTTATTTCCCAGGAGA
TAAGTACTCCCCAGTACAAATTTCCTAGGAGATAGGTACTCCTAGGGGTA
cttatttcctaggaaatttgTACTGGGGAGTACTCCCTTACTGGGGGTAC
AAATTTCCTAGAGGGGGTATCAATTTCCTAGGAAAAATGTACTGGGGAGT
ATGTTTTTCCTGGGAAAAATGTACTCCGGGAGTACTTTTTTCCAGGGAGT
ACTTATTTTTCGTTACACCGGTGCCTACTACTATGTGTGCTATGATGCGT
CATAgatttattttattgaaaatccaGAAACAACTTACACTTACACCGTG
CTAAGACAATAGAATAGGGGAAAAACGGACAGATTTTAGGTTTATgtgtt
tattttcaaagaacttTGTCGAAATTCTTAAATTATGgccttcaaaatca
aaatttttggttaATTTCACAAATCACAACGAACAAACTTGTTAGAATTG
TAGAATTTTCTACGGCTCTTTTATACGATtattaaaaagtttatttttac
tTTCCCGCA Coding sequence (CDS) from alignment at sc0004339:3356..5614+ >TCONS_00043550 ID=TCONS_00043550|Name=TCONS_00043550|organism=Clytia hemisphaerica|type=CDS|length=2592bp|location=Sequence derived from alignment at sc0004339:3356..5614+ (Clytia hemisphaerica)
CTTGTATTTATTTCAGGCAATATAACAGCAGAGGACAAATGTGGACGACC
TTTAGGTTTACAATTTGATCGTGACCAGGAAAATCTCATTATTTGTGACG
CTTACATTGGTTTACTAAAATACAACTTAAAAGCTGGGGAACTTACAACA
TTAATTTCTGCTGCCAAAGGAGTCAACGATGTTCCATTCAAATTTGTCAA
CCACTTAACCATCTCCAGTAGCAATAAAGTCTATTTTACAGACTCGAGTT
GGAAATGGCAGAGGCGTGATTTTCCATACATGATCTTGGAGGGCGGTGGT
CAAGGGCGTTTAATTAGTTATGATATAGAGACAAAACAAAGTGAAGTACT
GATGGATGGGTTGTTTTTTCCGAATGGAATTGCGTTATCCCCCGATGAGG
AATTTGTTGTAGTATGTGAAACCACAGCTAGTCGAATTATGAGGTTATTT
TTGAAAGGCTCAAGAAAAGGAATTTATGATCTCTTCTCCGACAATCTTCC
AGGGGCGCCTGATAATATCCGCCCTTCTAAAGATGGTGGTTATTGGGTAG
CCTTGCCATCTATCAGAAAATGGCCGTTCTCGTTCTTGGATTCGGTTGGA
CCTTATCCTAACCTGAAATCAGCTATCGCTAAGCTTCTCCCTAAAGAGAC
GTTCCACGGTCTAATCAAGAAATACGGGTTGATGATTAAGCTTGATTACT
ACGGCGATATCATTAAGAGTTATCACGATCCCGATGGTTCGGTCATAACG
CATATTTCGGAAGTTTATGAAGATCCTAACGATCATAACATCTTGTATTT
TGGATCCTTCAAAAATGACTTTATTGGAAAATTAAGATTGAATAGTAAGC
AAACTGACCTTTGACTTGTATTTATTTCAGGCAATATAACAGCAGAGGAC
AAATGTGGACGACCTTTAGGTTTACAATTTGATCGTGACCAGGAAAATCT
CATTATTTGTGACGCTTACATTGGTTTACTAAAATACAACTTAAAAGCTG
GGGAACTTACAACATTAATTTCTGCTGCCAAAGGAGTCAACGATGTTCCA
TTCAAATTTGTCAACCACTTAACCATCTCCAGTAGCAATAAAGTCTATTT
TACAGACTCGAGTTGGAAATGGCAGAGGCGTGATTTTCCATACATGATCT
TGGAGGGCGGTGGTCAAGGGCGTTTAATTAGTTATGATATAGAGACAAAA
CAAAGTGAAGTACTGATGGATGGGTTGTTTTTTCCGAATGGAATTGCGTT
ATCCCCCGATGAGGAATTTGTTGTAGTATGTGAAACCACAGCTAGTCGAA
TTATGAGGTTATTTTTGAAAGGCTCAAGAAAAGGAATTTATGATCTCTTC
TCCGACAATCTTCCAGGGGCGCCTGATAATATCCGCCCTTCTAAAGATGG
TGGTTATTGGGTAGCCTTGCCATCTATCAGAAAATGGCCGTTCTCGTTCT
TGGATTCGGTTGGACCTTATCCTAACCTGAAATCAGCTATCGCTAAGCTT
CTCCCTAAAGAGACGTTCCACGGTCTAATCAAGAAATACGGGTTGATGAT
TAAGCTTGATTACTACGGCGATATCATTAAGAGTTATCACGATCCCGATG
GTTCGGTCATAACGCATATTTCGGAAGTTTATGAAGATCCTAACGATCAT
AACATCTTGTATTTTGGATCCTTCAAAAATGACTTTATTGGAAAATTAAG
ATTGAATAGTAAGCAAACTGACCTTTGACTTGTATTTATTTCAGGCAATA
TAACAGCAGAGGACAAATGTGGACGACCTTTAGGTTTACAATTTGATCGT
GACCAGGAAAATCTCATTATTTGTGACGCTTACATTGGTTTACTAAAATA
CAACTTAAAAGCTGGGGAACTTACAACATTAATTTCTGCTGCCAAAGGAG
TCAACGATGTTCCATTCAAATTTGTCAACCACTTAACCATCTCCAGTAGC
AATAAAGTCTATTTTACAGACTCGAGTTGGAAATGGCAGAGGCGTGATTT
TCCATACATGATCTTGGAGGGCGGTGGTCAAGGGCGTTTAATTAGTTATG
ATATAGAGACAAAACAAAGTGAAGTACTGATGGATGGGTTGTTTTTTCCG
AATGGAATTGCGTTATCCCCCGATGAGGAATTTGTTGTAGTATGTGAAAC
CACAGCTAGTCGAATTATGAGGTTATTTTTGAAAGGCTCAAGAAAAGGAA
TTTATGATCTCTTCTCCGACAATCTTCCAGGGGCGCCTGATAATATCCGC
CCTTCTAAAGATGGTGGTTATTGGGTAGCCTTGCCATCTATCAGAAAATG
GCCGTTCTCGTTCTTGGATTCGGTTGGACCTTATCCTAACCTGAAATCAG
CTATCGCTAAGCTTCTCCCTAAAGAGACGTTCCACGGTCTAATCAAGAAA
TACGGGTTGATGATTAAGCTTGATTACTACGGCGATATCATTAAGAGTTA
TCACGATCCCGATGGTTCGGTCATAACGCATATTTCGGAAGTTTATGAAG
ATCCTAACGATCATAACATCTTGTATTTTGGATCCTTCAAAAATGACTTT
ATTGGAAAATTAAGATTGAATAGTAAGCAAACTGACCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043550-exon-sc0004339-1491911889:3356..3800 | TCONS_00043550-exon-sc0004339-1491911889:3356..3800 | Clytia hemisphaerica | exon |
| TCONS_00043550-exon-sc0004339-1510915933:3356..3800 | TCONS_00043550-exon-sc0004339-1510915933:3356..3800 | Clytia hemisphaerica | exon |
| TCONS_00043550-exon-sc0004339-1575043694:3356..3800 | TCONS_00043550-exon-sc0004339-1575043694:3356..3800 | Clytia hemisphaerica | exon |
| TCONS_00043550-exon-sc0004339-1491911889:4343..4532 | TCONS_00043550-exon-sc0004339-1491911889:4343..4532 | Clytia hemisphaerica | exon |
| TCONS_00043550-exon-sc0004339-1510915933:4343..4532 | TCONS_00043550-exon-sc0004339-1510915933:4343..4532 | Clytia hemisphaerica | exon |
| TCONS_00043550-exon-sc0004339-1575043694:4343..4532 | TCONS_00043550-exon-sc0004339-1575043694:4343..4532 | Clytia hemisphaerica | exon |
| TCONS_00043550-exon-sc0004339-1491911889:4751..5614 | TCONS_00043550-exon-sc0004339-1491911889:4751..5614 | Clytia hemisphaerica | exon |
| TCONS_00043550-exon-sc0004339-1510915933:4751..5614 | TCONS_00043550-exon-sc0004339-1510915933:4751..5614 | Clytia hemisphaerica | exon |
| TCONS_00043550-exon-sc0004339-1575043694:4751..5614 | TCONS_00043550-exon-sc0004339-1575043694:4751..5614 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004339 | supercontig | sc0004339:3356..5614 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011042 | 6-blade_b-propeller_TolB-like |
| IPR018119 | Strictosidine_synth_cons-reg |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009058 | biosynthetic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016844 | strictosidine synthase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009058 |
biosynthetic process |
| molecular_function |
GO:0016844 |
strictosidine synthase activity |
Blast
BLAST of TCONS_00043550 vs. Swiss-Prot (Human)
Match: APMAP (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2) HSP 1 Score: 232.646 bits (592), Expect = 4.812e-70 Identity = 125/274 (45.62%), Postives = 174/274 (63.50%), Query Frame = 3
Query: 33 EDKCGRPLGLQFDRDQENLIICDAYIGLLKYNLKAGELTTLISAAKGVNDVPFKFVNHLTISS-SNKVYFTDSSWKWQRRDFPYMILEGGGQGRLISYDIETKQSEVLMDGLFFPNGIALSPDEEFVVVCETTASRIMRLFLKGSRKGIYDLFSDNLPGAPDNIRPSKDGGYWVALPSIRKWP-FSFLDSVGPYPNLKSAIAKLLPKETFHGLIKKYGLMIKLDYYGDIIKSYHDPDGSVITHISEVYEDPNDHNILYFGSFKNDFIGKLRLNS 848
E CGRPLG++ + L + DAY GL + N E+ L+S+ + FVN LT++ K+YFTDSS KWQRRD+ +++EG GRL+ YD T++ +VL+D L FPNG+ LSP E+FV+V ETT +RI R+++ G KG DLF +N+PG PDNIRPS GGYWV + +IR P FS LD + P +K I KL +ET + +Y L+++L G +S HDPDG V T+ISEV+E + H LY GSF++ F+ +L L +
Sbjct: 146 EPVCGRPLGIRAGPNG-TLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPRYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEH-DGH--LYLGSFRSPFLCRLSLQA 415
The following BLAST results are available for this feature:
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