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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043542 ID=TCONS_00043542|Name=TCONS_00043542|organism=Clytia hemisphaerica|type=transcript|length=1201bp
ACCCTTTCCATTTCGACTGGTGTTCTTTTGTTGAGGGTTGGAGTAGAAAT
TCTGGTGATTGGTGTAGAAGAAGTCTGGTTGATAAGTTTGGTTCTGTGAT
GGTTGGTGGAATTGATTGAAGTGTGACCATGAAATCCTGATGATTGATTA
ACCAGAACAGGAGTGAtgtgtgaagtctgaccattgatgggtgaagtcGG
GCCATTGAtgtgtgaagtctgaccattgatgtgtgaagtctgaccattga
tgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaagtctg
accattgatacgtgaagtctgaccattgatacgtgaagtctgaccattga
tgggtgaagtctgaccattgatgggtgaagtctgaccattgatggatgaa
gtctgaccattgatgggtgaagtcgggccattgatgggtgaagtcGGACC
ATTGAtgtgtgaagtctgaccattgatgtgtgaagtctgaccattgatgt
gtgaagtctgaccattgatacgtgaagtctgaccattgatacgtgaagtc
tgaccattgatacgtgaagtctgaccattgatacgtgaagtctgaccatt
gatacgtgaagtctgaccattgatgggtgaagtctgaccattgatgggtg
aaatctgaccattgatgggtgaagtctgaccattgatgggtGACGTTGGA
GCGTTGAGTTGTGAGGTCAAAGGGTAGGTGTGTGACCAACCATGATGGGA
CCATGGATTGCTTTGATACAACATGGGAACACCTTGATGGTACGCAggag
cgccatgatgagacATAGGAGCGCCATGATGAAACATTGGAGCACCATGA
TGATACATTGGAGCGCCATGATGAGATGAATGAGCGCCTTGATGAGACGT
TGGAGCACCTTGATGAAACATTGGAGCACCTTGATGAAACATTGGAGCAC
CTTGATGAAACATTGGAGCACCTTGATAAGACGTAGGAGCGCCATGATGA
GATGTAggagcgccatgatgagacgtagaagcgccatgatgagacgtaGG
AGCACCTTGATGATATGTTGGAGCACCTTGATGATACGTAGGAGCGTCTT
GTTGCGATGTAGGAGCGTCATGATGAAACGTTGGAGCGCCATGATAAAAC
GTAGGAGCACCTTGATGAGACATTGAAGTTccatgatgagacgttgaaGC
G Run BLAST on NCBI protein sequence of TCONS_00043542-protein >TCONS_00043542-protein ID=TCONS_00043542-protein|Name=TCONS_00043542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
ASTSHHGTSMSHQGAPTFYHGAPTFHHDAPTSQQDAPTYHQGAPTYHQGA
PTSHHGASTSHHGAPTSHHGAPTSYQGAPMFHQGAPMFHQGAPMFHQGAP
TSHQGAHSSHHGAPMYHHGAPMFHHGAPMSHHGAPAYHQGVPMLYQSNPW
SHHGWSHTYPLTSQLNAPTSPINGQTSPINGQISPINGQTSPINGQTSRI
NGQTSRINGQTSRINGQTSRINGQTSRINGQTSHINGQTSHINGQTSHIN
GPTSPINGPTSPINGQTSSINGQTSPINGQTSPINGQTSRINGQTSRING
QTXXXXXXXXXXXXXXHQWSDFTHQWSDFTHQWPDFTHQWSDFTHHSCSG Run BLAST on NCBI transcript from alignment at sc0004333:3124..4324 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043542 ID=TCONS_00043542|Name=TCONS_00043542|organism=Clytia hemisphaerica|type=transcript|length=1201bp|location=Sequence derived from alignment at sc0004333:3124..4324 (Clytia hemisphaerica)
CGCttcaacgtctcatcatggAACTTCAATGTCTCATCAAGGTGCTCCTA
CGTTTTATCATGGCGCTCCAACGTTTCATCATGACGCTCCTACATCGCAA
CAAGACGCTCCTACGTATCATCAAGGTGCTCCAACATATCATCAAGGTGC
TCCtacgtctcatcatggcgcttctacgtctcatcatggcgctccTACAT
CTCATCATGGCGCTCCTACGTCTTATCAAGGTGCTCCAATGTTTCATCAA
GGTGCTCCAATGTTTCATCAAGGTGCTCCAATGTTTCATCAAGGTGCTCC
AACGTCTCATCAAGGCGCTCATTCATCTCATCATGGCGCTCCAATGTATC
ATCATGGTGCTCCAATGTTTCATCATGGCGCTCCTATgtctcatcatggc
gctccTGCGTACCATCAAGGTGTTCCCATGTTGTATCAAAGCAATCCATG
GTCCCATCATGGTTGGTCACACACCTACCCTTTGACCTCACAACTCAACG
CTCCAACGTCacccatcaatggtcagacttcacccatcaatggtcagatt
tcacccatcaatggtcagacttcacccatcaatggtcagacttcacgtat
caatggtcagacttcacgtatcaatggtcagacttcacgtatcaatggtc
agacttcacgtatcaatggtcagacttcacgtatcaatggtcagacttca
cacatcaatggtcagacttcacacatcaatggtcagacttcacacaTCAA
TGGTCCgacttcacccatcaatggcccgacttcacccatcaatggtcaga
cttcatccatcaatggtcagacttcacccatcaatggtcagacttcaccc
atcaatggtcagacttcacgtatcaatggtcagacttcacgtatcaatgg
tcagacttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
atcaatggtcagacttcacacatcaatggtcagacttcacacaTCAATGG
CCCgacttcacccatcaatggtcagacttcacacaTCACTCCTGTTCTGG
TTAATCAATCATCAGGATTTCATGGTCACACTTCAATCAATTCCACCAAC
CATCACAGAACCAAACTTATCAACCAGACTTCTTCTACACCAATCACCAG
AATTTCTACTCCAACCCTCAACAAAAGAACACCAGTCGAAATGGAAAGGG
T Coding sequence (CDS) from alignment at sc0004333:3124..4324 >TCONS_00043542 ID=TCONS_00043542|Name=TCONS_00043542|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at sc0004333:3124..4324 (Clytia hemisphaerica)
GCttcaacgtctcatcatggAACTTCAATGTCTCATCAAGGTGCTCCTAC
GTTTTATCATGGCGCTCCAACGTTTCATCATGACGCTCCTACATCGCAAC
AAGACGCTCCTACGTATCATCAAGGTGCTCCAACATATCATCAAGGTGCT
CCtacgtctcatcatggcgcttctacgtctcatcatggcgctccTACATC
TCATCATGGCGCTCCTACGTCTTATCAAGGTGCTCCAATGTTTCATCAAG
GTGCTCCAATGTTTCATCAAGGTGCTCCAATGTTTCATCAAGGTGCTCCA
ACGTCTCATCAAGGCGCTCATTCATCTCATCATGGCGCTCCAATGTATCA
TCATGGTGCTCCAATGTTTCATCATGGCGCTCCTATgtctcatcatggcg
ctccTGCGTACCATCAAGGTGTTCCCATGTTGTATCAAAGCAATCCATGG
TCCCATCATGGTTGGTCACACACCTACCCTTTGACCTCACAACTCAACGC
TCCAACGTCacccatcaatggtcagacttcacccatcaatggtcagattt
cacccatcaatggtcagacttcacccatcaatggtcagacttcacgtatc
aatggtcagacttcacgtatcaatggtcagacttcacgtatcaatggtca
gacttcacgtatcaatggtcagacttcacgtatcaatggtcagacttcac
acatcaatggtcagacttcacacatcaatggtcagacttcacacaTCAAT
GGTCCgacttcacccatcaatggcccgacttcacccatcaatggtcagac
ttcatccatcaatggtcagacttcacccatcaatggtcagacttcaccca
tcaatggtcagacttcacgtatcaatggtcagacttcacgtatcaatggt
cagacttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNca
tcaatggtcagacttcacacatcaatggtcagacttcacacaTCAATGGC
CCgacttcacccatcaatggtcagacttcacacaTCACTCCTGTTCTGGT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043542-exon-sc0004333-1491911889:3124..4324 | TCONS_00043542-exon-sc0004333-1491911889:3124..4324 | Clytia hemisphaerica | exon |
| TCONS_00043542-exon-sc0004333-1510915933:3124..4324 | TCONS_00043542-exon-sc0004333-1510915933:3124..4324 | Clytia hemisphaerica | exon |
| TCONS_00043542-exon-sc0004333-1575043694:3124..4324 | TCONS_00043542-exon-sc0004333-1575043694:3124..4324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004333 | supercontig | sc0004333:3124..4324 . |
Blast
The following BLAST results are available for this feature:
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