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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043454 ID=TCONS_00043454|Name=TCONS_00043454|organism=Clytia hemisphaerica|type=transcript|length=985bp
CTCCATTTGATTCTCGCACATCACCGGTATCTCTGGAAGGTTCTTCATCG
GACCATCATGGCCAGAAAACAAGAGCAGTTGATCGCACCTGCCCTCCGAA
AGATTGGTTGCCATTATCTTGCGTTTCAACTAGACTCCTATTTTAAAAGt
AAGAAGAAATACTATGATGGCTCAGAAACTTTACGCATGATCGGTAACGA
CTGTAAGCTTTTCGAGGACAATATTGACACCTTCTTGAATGTTTTTATTG
CGGAACGTAATCAAAGTTGGAATGACGAAAGTTCGGAAAGATTACGGCAC
GTGCTGAAGCTCTACAAACGTTTCAAAGATCTTGCTAGGGATATACGATC
AACGCACGCTGATAAAGAACGGATTTCGTCATTTGGTAAACGAGCGGAAG
AATTTTTCCGATTGTTTGTTCATAATGCACCTACAGATAGTGTAAATGGA
ATGCCTTATCTTCACTACCTTCGCCACCACTTAGCGGATGAAATGGAGTT
ATTCAGTCGACTTTTTGGCTGGGGTTATGGAATATTTTCAACAAATGCCG
GCGAGCATCTAAACAAAGTGATAAAGCAGTATGAGATGCACCATACAAAC
TTAGATTCTAAACGTTTTTACACCATAATACAAATGATTCGATCGAAACA
GTTTGAATACACGGAATCAATTTATCCGAAGGAAAAAACTATAATATGTT
CTGCCTGCAACCAAAGTGGGCATAATCGAAAAAATAAATCATGCCCTCTA
CACTCCAGTCATCCCAGGATCGAATTTGAGGACTCTGAAGAAGAAAGCAA
AGATGAACAGTGATTTTATTTCAGCATTATACACCTCATTATAATTGGGG
TTATTTTTGAAATTCATATATTGTGACGCCTTTTGAGATTTTTATTTCTT
AGCTTAGTTTTGCATAATCTGGAATTTGTTTTTCATCATTAGCTAGCTAT
TTTACGAACCCTTTTTTTATAAATTTCTGTTGAGG Run BLAST on NCBI protein sequence of TCONS_00043454-protein >TCONS_00043454-protein ID=TCONS_00043454-protein|Name=TCONS_00043454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
LHLILAHHRYLWKVLHRTIMARKQEQLIAPALRKIGCHYLAFQLDSYFKS
KKKYYDGSETLRMIGNDCKLFEDNIDTFLNVFIAERNQSWNDESSERLRH
VLKLYKRFKDLARDIRSTHADKERISSFGKRAEEFFRLFVHNAPTDSVNG
MPYLHYLRHHLADEMELFSRLFGWGYGIFSTNAGEHLNKVIKQYEMHHTN
LDSKRFYTIIQMIRSKQFEYTESIYPKEKTIICSACNQSGHNRKNKSCPL
HSSHPRIEFEDSEEESKDEQ Run BLAST on NCBI transcript from alignment at sc0004235:4232..5762+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043454 ID=TCONS_00043454|Name=TCONS_00043454|organism=Clytia hemisphaerica|type=transcript|length=1531bp|location=Sequence derived from alignment at sc0004235:4232..5762+ (Clytia hemisphaerica)
CTCCATTTGATTCTCGCACATCACCGGTATCTCTGGAAGGTTCTTCATCG
GACCATCATGGCCAGAAAACAAGAGCAGTTGATCGCACCTGCCCTCCGAA
AGATTGGTTGCCATTATCTTGCGTTTCAACTAGACTCCTATTTTAAAAGG
TGTGTATACTCTTCATAATTAATCAAGCAAGTCGTGTATTAAAAGCATGG
GGTATTTTTATTCGACGGAGTACATATGCTTTTAAATCTAACTACCATAG
GCGTTCTGCACAAATAAAANTTTACATATGCTTTTAAATCTAACTACCAT
AGGCGTTCTGCACAAAAAAAAACGTCTAATAAAATATGACACTACTGGAC
AGACACCTGTTCACTGATACATCAAGTTGGGGGATATGGGATATATATTa
ggttttctatttttctttatagtAAGAAGAAATACTATGATGGCTCAGAA
ACTTTACGCATGATCGGTAACGACTGTAAGCTTTTCGAGGACAATATTGA
CACCTTCTTGAATGTTTTTATTGCGGAACGTAATCAAAGTTGGAATGACG
AAAGTTCGGAAAGATTACGGCACGTGCTGAAGCTCTACAAACGTTTCAAA
GATCTTGCTAGGTAAAGTATTATATCATTTGTTCATTTGCTATTTTTAGC
TATTAAGTTTATGTAGATTTTAATTGTGATTTCAATTATATTTTTTACGG
GTATCACGGCACAAAATTGTCATCTAATGACAGGAGAAGAAAACAGAATC
AGTTTCAAATGAGTTAATGGGTGAATGAAATTGATAGAAACTCTTTCTTG
AATAAGCGAGTGAGTTTTAAAAAACTATAAACGTTTACGTTCACTTTATT
CCTTTTTGATTTAATTTTGCGTTTCTGACCATAGGGATATACGATCAACG
CACGCTGATAAAGAACGGATTTCGTCATTTGGTAAACGAGCGGAAGAATT
TTTCCGATTGTTTGTTCATAATGCACCTACAGATAGTGTAAATGGAATGC
CTTATCTTCACTACCTTCGCCACCACTTAGCGGATGAAATGGAGTTATTC
AGTCGACTTTTTGGCTGGGGTTATGGAATATTTTCAACAAATGCCGGCGA
GCATCTAAACAAAGTGATAAAGCAGTATGAGATGCACCATACAAACTTAG
ATTCTAAACGTTTTTACACCATAATACAAATGATTCGATCGAAACAGTTT
GAATACACGGAATCAATTTATCCGAAGGAAAAAACTATAATATGTTCTGC
CTGCAACCAAAGTGGGCATAATCGAAAAAATAAATCATGCCCTCTACACT
CCAGTCATCCCAGGATCGAATTTGAGGACTCTGAAGAAGAAAGCAAAGAT
GAACAGTGATTTTATTTCAGCATTATACACCTCATTATAATTGGGGTTAT
TTTTGAAATTCATATATTGTGACGCCTTTTGAGATTTTTATTTCTTAGCT
TAGTTTTGCATAATCTGGAATTTGTTTTTCATCATTAGCTAGCTATTTTA
CGAACCCTTTTTTTATAAATTTCTGTTGAGG Coding sequence (CDS) from alignment at sc0004235:4232..5762+ >TCONS_00043454 ID=TCONS_00043454|Name=TCONS_00043454|organism=Clytia hemisphaerica|type=CDS|length=2439bp|location=Sequence derived from alignment at sc0004235:4232..5762+ (Clytia hemisphaerica)
CTCCATTTGATTCTCGCACATCACCGGTATCTCTGGAAGGTTCTTCATCG
GACCATCATGGCCAGAAAACAAGAGCAGTTGATCGCACCTGCCCTCCGAA
AGATTGGTTGCCATTATCTTGCGTTTCAACTAGACTCCTATTTTAAAAGt
AAGAAGAAATACTATGATGGCTCAGAAACTTTACGCATGATCGGTAACGA
CTGTAAGCTTTTCGAGGACAATATTGACACCTTCTTGAATGTTTTTATTG
CGGAACGTAATCAAAGTTGGAATGACGAAAGTTCGGAAAGATTACGGCAC
GTGCTGAAGCTCTACAAACGTTTCAAAGATCTTGCTAGGGATATACGATC
AACGCACGCTGATAAAGAACGGATTTCGTCATTTGGTAAACGAGCGGAAG
AATTTTTCCGATTGTTTGTTCATAATGCACCTACAGATAGTGTAAATGGA
ATGCCTTATCTTCACTACCTTCGCCACCACTTAGCGGATGAAATGGAGTT
ATTCAGTCGACTTTTTGGCTGGGGTTATGGAATATTTTCAACAAATGCCG
GCGAGCATCTAAACAAAGTGATAAAGCAGTATGAGATGCACCATACAAAC
TTAGATTCTAAACGTTTTTACACCATAATACAAATGATTCGATCGAAACA
GTTTGAATACACGGAATCAATTTATCCGAAGGAAAAAACTATAATATGTT
CTGCCTGCAACCAAAGTGGGCATAATCGAAAAAATAAATCATGCCCTCTA
CACTCCAGTCATCCCAGGATCGAATTTGAGGACTCTGAAGAAGAAAGCAA
AGATGAACAGTGACTCCATTTGATTCTCGCACATCACCGGTATCTCTGGA
AGGTTCTTCATCGGACCATCATGGCCAGAAAACAAGAGCAGTTGATCGCA
CCTGCCCTCCGAAAGATTGGTTGCCATTATCTTGCGTTTCAACTAGACTC
CTATTTTAAAAGtAAGAAGAAATACTATGATGGCTCAGAAACTTTACGCA
TGATCGGTAACGACTGTAAGCTTTTCGAGGACAATATTGACACCTTCTTG
AATGTTTTTATTGCGGAACGTAATCAAAGTTGGAATGACGAAAGTTCGGA
AAGATTACGGCACGTGCTGAAGCTCTACAAACGTTTCAAAGATCTTGCTA
GGGATATACGATCAACGCACGCTGATAAAGAACGGATTTCGTCATTTGGT
AAACGAGCGGAAGAATTTTTCCGATTGTTTGTTCATAATGCACCTACAGA
TAGTGTAAATGGAATGCCTTATCTTCACTACCTTCGCCACCACTTAGCGG
ATGAAATGGAGTTATTCAGTCGACTTTTTGGCTGGGGTTATGGAATATTT
TCAACAAATGCCGGCGAGCATCTAAACAAAGTGATAAAGCAGTATGAGAT
GCACCATACAAACTTAGATTCTAAACGTTTTTACACCATAATACAAATGA
TTCGATCGAAACAGTTTGAATACACGGAATCAATTTATCCGAAGGAAAAA
ACTATAATATGTTCTGCCTGCAACCAAAGTGGGCATAATCGAAAAAATAA
ATCATGCCCTCTACACTCCAGTCATCCCAGGATCGAATTTGAGGACTCTG
AAGAAGAAAGCAAAGATGAACAGTGACTCCATTTGATTCTCGCACATCAC
CGGTATCTCTGGAAGGTTCTTCATCGGACCATCATGGCCAGAAAACAAGA
GCAGTTGATCGCACCTGCCCTCCGAAAGATTGGTTGCCATTATCTTGCGT
TTCAACTAGACTCCTATTTTAAAAGtAAGAAGAAATACTATGATGGCTCA
GAAACTTTACGCATGATCGGTAACGACTGTAAGCTTTTCGAGGACAATAT
TGACACCTTCTTGAATGTTTTTATTGCGGAACGTAATCAAAGTTGGAATG
ACGAAAGTTCGGAAAGATTACGGCACGTGCTGAAGCTCTACAAACGTTTC
AAAGATCTTGCTAGGGATATACGATCAACGCACGCTGATAAAGAACGGAT
TTCGTCATTTGGTAAACGAGCGGAAGAATTTTTCCGATTGTTTGTTCATA
ATGCACCTACAGATAGTGTAAATGGAATGCCTTATCTTCACTACCTTCGC
CACCACTTAGCGGATGAAATGGAGTTATTCAGTCGACTTTTTGGCTGGGG
TTATGGAATATTTTCAACAAATGCCGGCGAGCATCTAAACAAAGTGATAA
AGCAGTATGAGATGCACCATACAAACTTAGATTCTAAACGTTTTTACACC
ATAATACAAATGATTCGATCGAAACAGTTTGAATACACGGAATCAATTTA
TCCGAAGGAAAAAACTATAATATGTTCTGCCTGCAACCAAAGTGGGCATA
ATCGAAAAAATAAATCATGCCCTCTACACTCCAGTCATCCCAGGATCGAA
TTTGAGGACTCTGAAGAAGAAAGCAAAGATGAACAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043454-exon-sc0004235-1491911889:4232..4380 | TCONS_00043454-exon-sc0004235-1491911889:4232..4380 | Clytia hemisphaerica | exon |
| TCONS_00043454-exon-sc0004235-1510915933:4232..4380 | TCONS_00043454-exon-sc0004235-1510915933:4232..4380 | Clytia hemisphaerica | exon |
| TCONS_00043454-exon-sc0004235-1575043694:4232..4380 | TCONS_00043454-exon-sc0004235-1575043694:4232..4380 | Clytia hemisphaerica | exon |
| TCONS_00043454-exon-sc0004235-1491911889:4654..4842 | TCONS_00043454-exon-sc0004235-1491911889:4654..4842 | Clytia hemisphaerica | exon |
| TCONS_00043454-exon-sc0004235-1510915933:4654..4842 | TCONS_00043454-exon-sc0004235-1510915933:4654..4842 | Clytia hemisphaerica | exon |
| TCONS_00043454-exon-sc0004235-1575043694:4654..4842 | TCONS_00043454-exon-sc0004235-1575043694:4654..4842 | Clytia hemisphaerica | exon |
| TCONS_00043454-exon-sc0004235-1491911889:5116..5762 | TCONS_00043454-exon-sc0004235-1491911889:5116..5762 | Clytia hemisphaerica | exon |
| TCONS_00043454-exon-sc0004235-1510915933:5116..5762 | TCONS_00043454-exon-sc0004235-1510915933:5116..5762 | Clytia hemisphaerica | exon |
| TCONS_00043454-exon-sc0004235-1575043694:5116..5762 | TCONS_00043454-exon-sc0004235-1575043694:5116..5762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004235 | supercontig | sc0004235:4232..5762 + |
Blast
The following BLAST results are available for this feature:
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