TCONS_00043452 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00043452
Unique Name	TCONS_00043452
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1037

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0004234:151..3522+
coding sequence from alignment at sc0004234:151..3522+

transcript sequence

>TCONS_00043452 ID=TCONS_00043452|Name=TCONS_00043452|organism=Clytia hemisphaerica|type=transcript|length=1037bp
ATTTGGTATGCCGTCTTAATTATTCATATGAATGATAACAAACTTAAATC
AGTGAAAATACTTTCTGTTCAAATTACTATCTAGAGCATTAAAGAATTAG
CAGATGTGAAATTCATCCCATCTCTGAATGGAAACTTGTACAAATGGAAC
GGGGAAAGACTTGAGactGTACCTCTTTCAGCAGATTATCTACTTGGAAA
TATCAAAAGACTACCAGATGGTAGTTATATTGTTGGTGGGCAGGAAGTAT
CCATCAGTGGTATTGATGTTAATACTGGAGAGCTTTCATATGACTGTACA
TTGAAAGGATGTAAGCCAGTGAAGAAATACTCTAACACAATCAAACACAA
GGATATTATCTCGTTGCGAAGAACACAGAAAACCATCCGTGTTTTTGAGC
CACAGAGTGGACAAGAAAAGTGGAATTATTCTGTCGGAAATTTTGACATC
GAACTGGTAGAAGGTGAGAGTGGGGATGTATTGGATTCATATTGTGGTGA
AGATGGTGAATCTACCAATGATCAATATAGTTTTGTCATGCAGGATGGTG
TTGTTGCCAGTGAAGAATGGACATTCCATTTCACATCACCCATTGCAAGT
GCATGGAAACTGGAAGATAAACAACTGAAACCgttgaatgttttcaattc
AGATCAACTTCAACTTGGAGAGAATATCAACACGCAATCTTTAGTTTATT
TAGGACTTTACAAAGGTCAAATGTATGTTCAACATCCGAAcgagaaagag
aagaaagattcgaaaagcAACCTTTTCTCAGAAAAATTATCTTTGGACGT
ACCACAGATAGGTCATTGGAGACCTCTGGTTGCCACTTCTCCTTCCAGAA
CTCCTTTCATCAACTATGATCGTGGAGATTCGACAGCATTAAGCTCCATT
GATTACCCTTTCGACAATGGAATCTTTTTATATTCCAACACAACGGCTGT
AAGTTTATCATCCAACAACAAAGAAAACGAAGAAGGATATTGCAGTTCAG
AGAATCCTGATGTTTGCAATGCAGATAACCAGAGTGA

Run BLAST on NCBI

protein sequence of TCONS_00043452-protein

>TCONS_00043452-protein ID=TCONS_00043452-protein|Name=TCONS_00043452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MQDGVVASEEWTFHFTSPIASAWKLEDKQLKPLNVFNSDQLQLGENINTQ
SLVYLGLYKGQMYVQHPNEKEKKDSKSNLFSEKLSLDVPQIGHWRPLVAT
SPSRTPFINYDRGDSTALSSIDYPFDNGIFLYSNTTAVSLSSNNKENEEG
YCSSENPDVCNADNQS

Run BLAST on NCBI

transcript from alignment at sc0004234:151..3522+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00043452 ID=TCONS_00043452|Name=TCONS_00043452|organism=Clytia hemisphaerica|type=transcript|length=3372bp|location=Sequence derived from alignment at sc0004234:151..3522+ (Clytia hemisphaerica)
ATTTGGTATGCCGTCTTAATTATTCATATGAATGATAACAAACTTAAATC
AGTGAAAATACTTTCTGTTCAAATTACTATCTAGAGCATTAAAGAATTAG
CAGATGTGAAATTCATCCCATCTCTGAATGGAAACTTGTACAAATGGAAC
GGGGAAAGACTTGAGGTAGTTCTCCTTGTTCTGTCAACCAATTCTTTGCC
TTGAAAACAACACTTTTCAATTGTACAACTACTTATTGTAAATCAAGAAA
TATAGGTAACTAACAGTAGCGTGGTGGTTTGACCAAAATTGAGGCAAACT
GGTGAGGCAATTTTTTTAAGTTGGGATTTTGGCACCCGGGCTATCAAAAG
TAGAATATGTTTGTAAAACTTACACAAGCTAAGCAAGCATGAAAATTTAg
gggtatttttttctaattttgactGTAAACTGCTATTTCTAAGGCGTAAA
AAATTAAAGGGATATGCTGAAATTCGTAATCAGCCATACTCTTTTCTTCC
CCTTGTCTTTCAGCAAAACCCACAAATAAATTAGCCCCTGTTGGGCACTG
CTGGGGGGCCACcagccgtatgcgcagcgtcgcacgctgcgtctcccaat
ccagtgaatcactacacatctaaaaaattctaaaggaagaaaaatagccg
ccgattgatgatttgattttggttttaggaaataaaggacaaaaaagata
acattgcattgcaatttttaaccacaattaaataaatgacttagcaaaag
tatattttagatcttcttagccatcgtggctggccatcgtggttggacat
tcgagggtgactttgaaagactttgaaaagatTTGAAAGTGATTGGGAGC
CGCTATTGTATACAGAAAGtaaaagagcatctgaataagaattctttaaa
atgacaaaaaaatttgtgaagaagattgattttaacccatcaagctccaa
acttggtgaatagaaaatagtatcttggggtctcaaagttagtctagtgg
taggaaatctgcttaaggtgcaaaaagattatggttcaacgccatgaaga
ggaggctctgtagagctttgttaaattttcggaaaatttttacaaaacgt
tgtaaaccaCCACACTACTGGTAATTAATACAAATATTCAAGACCAAATC
AAGACAATCACATCTGAGAATGCTCCCAAAGGGCGATTAGCCCAAGAACA
TTTTCTTAATTGCCTCTCTCTGGTAATATAAAGCACAAGACTGGGCAAAA
TTATCCCTGAGTAATCTCTTTTAAATGATTTTATAGGAGGTGAATTGTTC
TTCGAAATGGATGTATGTGATTTATAATATAGTGTGCTATATATTGTTAA
AATCGTAAcctattatttttgttttagactGTACCTCTTTCAGCAGATTA
TCTACTTGGAAATATCAAAAGACTACCAGATGGTAGTTATATTGTTGGTG
GGCAGGAAGTATCCATCAGTGGTATTGATGTTAATACTGGAGAGGTAGGT
CAATTAAATCACCTATATGTATGTTACATCGTCTCTAGGCCAGTAGCATT
TATTCTATAGTTTACGCAAGTTTAGGAGATAATTATTTTGTAAGGATTTA
ATGTAAAAGATTGagttttataaaagaaaacccCAATTTACTTTGAGAAA
CTGAGCTAAACACAAACTGACATCTATTTGAAAATCATTAACTGTTCATT
TTCTCAGCTTTCATATGACTGTACATTGAAAGGATGTAAGCCAGTGAAGA
AATACTCTAACACAATCAAACACAAGGATATTATCTCGTTGCGAAGAACA
CAGAAAACCATCCGTGTTTTTGAGCCACAGAGTGGACAAGAAAAGTAAGT
CTTGGAAAGGATAATGATTAAGGGAAGACGAGTCCTCTAGATTTGTTACT
TATCATACTGATCATTACCCTTTCTATCTTTTGATTAACAACCAATatgt
attaaaaaaaatgaatattgtGATTAAAAGAGACGACATTAAAATTCTTC
TGTATACGAATGTTGTTGTGGATTTCATGTCGGTATTACCCAACAATATT
TCAAACCAAACATTCAGTCTCATAGATAAATATTTACCaagttctttttc
ttcattcagGTGGAATTATTCTGTCGGAAATTTTGACATCGAACTGGTAG
AAGGTGAGAGTGGGGATGTATTGGATTCATATTGTGGTGAAGATGGTGAA
TCTACCAATGATCAATATAGTTTTGTCATGCAGGATGGTGTTGTTGCCAG
TGAAGAATGGACATTCCATTTCACATCACCCATTGCAAGTGCATGGAAAC
TGGAAGATAAACAACTGAAACCgttgaatgttttcaattcAGATCAACTT
CAACTTGGAGAGAATATCAACACGCAATCTTTAGTTTATTTAGGTATCTA
TTGGACTGTGTTTTTTTATTGAGTTCTCCAGGAGCGAATGATGCCAAATT
TAGATCAGTCCTATCTGGAAACTAACCCAGTTTCCACATGTTGTAGATTC
GATAGGTGTATTTTGTAAACAGTCTGACGATCtcatttgacattttgaaa
gaagaaaaccgaatgtttttgcttcaaaaCAACTACCTTCCTTTAAAACA
TATTAACATTTCAGGACTTTACAAAGGTCAAATGTATGTTCAACATCCGA
AcgagaaagagaagaaagattcgaaaagcAACCTTTTCTCAGAAAAATTA
TCTTTGGACGTACCACAGATAGGTCATTGGAGACCTCTGGTTGCCACTTC
TCCTTCCAGAACTCCTTTCATCAACTATGATCGTGGAGATTCGACAGCAT
TAAGCTCCATTGATTACCCTTTCGGTAAGTATAGGTTTCAAATTCTAATC
TCAAACCAATTTCTTATCTTCAGTAAAAATTTTGCACTAGTTGAAGAATT
GAAATTTAAGAGTAAAAGTCaggttttctttgattttatttttgaaattt
tgaattaaaagtATTACTTAAAGCTTTTAAAAATCTTAgatgagaaaaat
gaagcaatttcaccgACAAGAACAATTTTGATGGTTTCTTTACCGTCTGA
CTGCCTCAAGATGAANTAAAGTATTActtaaatcttttaaaaatcttaga
tgagaaaaatgaagcaatttcaccgACAAGAACAATTTTGATGGTTTCTT
TACCGTCTGACTGCCTCAAGATGAATATAATTAGTCATACCTGCCGAACC
CGGTGCATCCTGTCCGTCTATACTTACCTCTATTTAATATTGTTTTAGAC
AATGGAATCTTTTTATATTCCAACACAACGGCTGTAAGTTTATCATCCAA
CAACAAAGAAAACGAAGAAGGATATTGCAGTTCAGAGAATCCTGATGTTT
GCAATGCAGATAACCAGAGTGA

Coding sequence (CDS) from alignment at sc0004234:151..3522+

>TCONS_00043452 ID=TCONS_00043452|Name=TCONS_00043452|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0004234:151..3522+ (Clytia hemisphaerica)
ATGCAGGATGGTGTTGTTGCCAGTGAAGAATGGACATTCCATTTCACATC
ACCCATTGCAAGTGCATGGAAACTGGAAGATAAACAACTGAAACCgttga
atgttttcaattcAGATCAACTTCAACTTGGAGAGAATATCAACACGCAA
TCTTTAGTTTATTTAGGACTTTACAAAGGTCAAATGTATGTTCAACATCC
GAAcgagaaagagaagaaagattcgaaaagcAACCTTTTCTCAGAAAAAT
TATCTTTGGACGTACCACAGATAGGTCATTGGAGACCTCTGGTTGCCACT
TCTCCTTCCAGAACTCCTTTCATCAACTATGATCGTGGAGATTCGACAGC
ATTAAGCTCCATTGATTACCCTTTCGACAATGGAATCTTTTTATATTCCA
ACACAACGGCTGTAAGTTTATCATCCAACAACAAAGAAAACGAAGAAGGA
TATTGCAGTTCAGAGAATCCTGATGTTTGCAATGCAGATAACCAGAGTAT
GCAGGATGGTGTTGTTGCCAGTGAAGAATGGACATTCCATTTCACATCAC
CCATTGCAAGTGCATGGAAACTGGAAGATAAACAACTGAAACCgttgaat
gttttcaattcAGATCAACTTCAACTTGGAGAGAATATCAACACGCAATC
TTTAGTTTATTTAGGACTTTACAAAGGTCAAATGTATGTTCAACATCCGA
AcgagaaagagaagaaagattcgaaaagcAACCTTTTCTCAGAAAAATTA
TCTTTGGACGTACCACAGATAGGTCATTGGAGACCTCTGGTTGCCACTTC
TCCTTCCAGAACTCCTTTCATCAACTATGATCGTGGAGATTCGACAGCAT
TAAGCTCCATTGATTACCCTTTCGACAATGGAATCTTTTTATATTCCAAC
ACAACGGCTGTAAGTTTATCATCCAACAACAAAGAAAACGAAGAAGGATA
TTGCAGTTCAGAGAATCCTGATGTTTGCAATGCAGATAACCAGAGTATGC
AGGATGGTGTTGTTGCCAGTGAAGAATGGACATTCCATTTCACATCACCC
ATTGCAAGTGCATGGAAACTGGAAGATAAACAACTGAAACCgttgaatgt
tttcaattcAGATCAACTTCAACTTGGAGAGAATATCAACACGCAATCTT
TAGTTTATTTAGGACTTTACAAAGGTCAAATGTATGTTCAACATCCGAAc
gagaaagagaagaaagattcgaaaagcAACCTTTTCTCAGAAAAATTATC
TTTGGACGTACCACAGATAGGTCATTGGAGACCTCTGGTTGCCACTTCTC
CTTCCAGAACTCCTTTCATCAACTATGATCGTGGAGATTCGACAGCATTA
AGCTCCATTGATTACCCTTTCGACAATGGAATCTTTTTATATTCCAACAC
AACGGCTGTAAGTTTATCATCCAACAACAAAGAAAACGAAGAAGGATATT
GCAGTTCAGAGAATCCTGATGTTTGCAATGCAGATAACCAGAGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_027148	XLOC_027148	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00043452-protein	TCONS_00043452-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0004234	supercontig	sc0004234:151..3522 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.40037	1.66485	2.79194	2.01581	8.61235	6.94077	14.7462	16.3046	8.24693	12.4215	6.98368	7.16951	9.08218	5.46387	4.84337	4.88403	5.73789	7.3637	5.53082	6.83359	7.45146	7.62448	3.93545	6.49049	13.8363	13.9236	5.38793	4.40687	2.25132	2.58419

Blast

[Close]

BLAST of TCONS_00043452 vs. Swiss-Prot (Human)
Match: E2AK3 (Eukaryotic translation initiation factor 2-alpha kinase 3 OS=Homo sapiens GN=EIF2AK3 PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 1.733e-38
Identity = 103/336 (30.65%), Postives = 176/336 (52.38%), Query Frame = 1

Query:  112 FIPSLNGNLYKWNGER--LETVPLSADYLLGNIKRLPDGSYIVGGQEVSISGIDVNTGELSYDCTLKGCKPVKKYSNTIKHKDIISLRRTQKTIRVFEPQSGQEKWNYSVGNFDIELV---EGESGDVLDSY-CGEDGESTN------DQYSFVMQDGVVASE---------------EWTFHFTSPIASAWKLEDKQLKPLNVF-------NSDQLQLGENI------NTQSLVYLGLYKGQMYVQ--------HPNEKEKKDSKSNLFSEKLSLDVPQIGHWRPLVATSPSRTPFI---------------NYDRGDSTALSSIDYPFDNGIFL 930
             IPSL+G L++W+ +R  +ETVP + + LL +  +  D   +VGG+ ++  G+   +G++ Y C+  GC+         + +DI+ L+RTQKT+R   P+SG EKWN+SVG+F++  +   E  +G +  ++   E+ E +       +Q + +M   +  S                EW + F +PIASAW L+D ++ P+++F       N D L+  E+I       T++ VYLG+Y+GQ+Y+Q         P+  +  +S +N   E   + +P I  W+PL+  SPSRTP +               +++   + ALS + YP+DNG +L
Sbjct:  153 IIPSLDGALFQWDQDRESMETVPFTVESLLESSYKFGDDVVLVGGKSLTTYGLSAYSGKVRYICSALGCRQWDS-DEMEQEEDILLLQRTQKTVRAVGPRSGNEKWNFSVGHFELRYIPDMETRAGFIESTFKPNENTEESKIISDVEEQEAAIMDIVIKVSVADWKVMAFSKKGGHLEWEYQFCTPIASAWLLKDGKVIPISLFDDTSYTSNDDVLEDEEDIVEAARGATENSVYLGMYRGQLYLQSSVRISEKFPSSPKALESVTN---ENAIIPLPTI-KWKPLIH-SPSRTPVLVGSDEFDKCLSNDKFSHEEYSNGALSILQYPYDNGYYL 482

The following BLAST results are available for this feature:

BLAST of TCONS_00043452 vs. Swiss-Prot (Human)

BLAST of TCONS_00043452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
E2AK3	1.733e-38	30.65	Eukaryotic translation initiation factor 2-alpha k...	[more]

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TCONS_00043452 (transcript) - C. hemisphaerica