TCONS_00043445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043445
Unique NameTCONS_00043445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length914

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043445 ID=TCONS_00043445|Name=TCONS_00043445|organism=Clytia hemisphaerica|type=transcript|length=914bp
AAATCACTGAACTCGAAGAAAAACATTCTCtacaaagaaaacttttgtTC
AAAGATTATTACGGATATAGTGCTATAGATCATCATGCGCGTCACGGGGA
TAAATTACTGAAAAGGCGAAATACAGTTCATCCAGTAAGTCCAAAAAAGG
AAGATCAACTGGATGAATATGAATTAGATCTGGAAGGCGGAAGAAACCTC
TCTGCTCACGTTGATAAACCAAGAACGCCCTTCACTGAAGGAGATTTCGA
TGTAGGTCAGNCGTTGATAAACCAAGAACGCCCTTCACTGAAGGAGATTT
CGATGTAGGTCAGTTAGAACAAATAGAAGAGACCGATATTCAGACGTTCG
AAGTTGTCGAGTAAGATGAAGAAATTGAAAGCTGAGTTATATCATCGTAA
CTAAGACAGTGGTTGGAAATACTTTGACATTGATGATACATGATTGATGC
AGGAGATTTATAAAAAGTGCAAAGGTTCTTGGCAAAGCGATAAAGTGAAA
CTTTAAACTGTTTGCTTTGATCCGTTATTCTCAGGCATTatttgaaaaca
caactttgATAAGTAAACGAAGAAGGAGAAGCGAGTCGGCTTTTGTAAAA
AGTATATTCGATAGATCCGATCAGCTCTTTTCGTTGAAattaatgggcca
ttccattaaatttccatggAACGATGGACGAACCTTTTTCAGTTAAGTCC
TTGAAAATGGCAAGATTTGCAGAAAAGAAAACCCTTGGGAGAATTCTTTT
CGTACCTTAAAATGACGGTGGGCAAACTAGAATCAGTTTCTTACCCCTGG
AAAAATTGCTcgaattaccccctggaaatgttcgtccactctgtatggat
atgaaatggaatggctcaatattttttaacattattttgaATATAATATT
TATATAATCGTGTA
Run BLAST on NCBI

protein sequence of TCONS_00043445-protein

>TCONS_00043445-protein ID=TCONS_00043445-protein|Name=TCONS_00043445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
ITELEEKHSLQRKLLFKDYYGYSAIDHHARHGDKLLKRRNTVHPVSPKKE
DQLDEYELDLEGGRNLSAHVDKPRTPFTEGDFDVGQXLINQERPSLKEIS
M
Run BLAST on NCBI

transcript from alignment at sc0004228:7034..7947

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043445 ID=TCONS_00043445|Name=TCONS_00043445|organism=Clytia hemisphaerica|type=transcript|length=914bp|location=Sequence derived from alignment at sc0004228:7034..7947 (Clytia hemisphaerica)
TACACGATTATATAAATATTATATtcaaaataatgttaaaaaatattgag
ccattccatttcatatccatacagagtggacgaacatttccagggggtaa
ttcgAGCAATTTTTCCAGGGGTAAGAAACTGATTCTAGTTTGCCCACCGT
CATTTTAAGGTACGAAAAGAATTCTCCCAAGGGTTTTCTTTTCTGCAAAT
CTTGCCATTTTCAAGGACTTAACTGAAAAAGGTTCGTCCATCGTTccatg
gaaatttaatggaatggcccattaatTTCAACGAAAAGAGCTGATCGGAT
CTATCGAATATACTTTTTACAAAAGCCGACTCGCTTCTCCTTCTTCGTTT
ACTTATcaaagttgtgttttcaaatAATGCCTGAGAATAACGGATCAAAG
CAAACAGTTTAAAGTTTCACTTTATCGCTTTGCCAAGAACCTTTGCACTT
TTTATAAATCTCCTGCATCAATCATGTATCATCAATGTCAAAGTATTTCC
AACCACTGTCTTAGTTACGATGATATAACTCAGCTTTCAATTTCTTCATC
TTACTCGACAACTTCGAACGTCTGAATATCGGTCTCTTCTATTTGTTCTA
ACTGACCTACATCGAAATCTCCTTCAGTGAAGGGCGTTCTTGGTTTATCA
ACGNCTGACCTACATCGAAATCTCCTTCAGTGAAGGGCGTTCTTGGTTTA
TCAACGTGAGCAGAGAGGTTTCTTCCGCCTTCCAGATCTAATTCATATTC
ATCCAGTTGATCTTCCTTTTTTGGACTTACTGGATGAACTGTATTTCGCC
TTTTCAGTAATTTATCCCCGTGACGCGCATGATGATCTATAGCACTATAT
CCGTAATAATCTTTGAacaaaagttttctttgtaGAGAATGTTTTTCTTC
GAGTTCAGTGATTT

Coding sequence (CDS) from alignment at sc0004228:7034..7947

>TCONS_00043445 ID=TCONS_00043445|Name=TCONS_00043445|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0004228:7034..7947 (Clytia hemisphaerica)
CTACATCGAAATCTCCTTCAGTGAAGGGCGTTCTTGGTTTATCAACGNCT
GACCTACATCGAAATCTCCTTCAGTGAAGGGCGTTCTTGGTTTATCAACG
TGAGCAGAGAGGTTTCTTCCGCCTTCCAGATCTAATTCATATTCATCCAG
TTGATCTTCCTTTTTTGGACTTACTGGATGAACTGTATTTCGCCTTTTCA
GTAATTTATCCCCGTGACGCGCATGATGATCTATAGCACTATATCCGTAA
TAATCTTTGAacaaaagttttctttgtaGAGAATGTTTTTCTTCGAGTTC
AGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027141XLOC_027141Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043445-proteinTCONS_00043445-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043445-exon-sc0004228-1491911889:7034..7947TCONS_00043445-exon-sc0004228-1491911889:7034..7947Clytia hemisphaericaexon
TCONS_00043445-exon-sc0004228-1510915933:7034..7947TCONS_00043445-exon-sc0004228-1510915933:7034..7947Clytia hemisphaericaexon
TCONS_00043445-exon-sc0004228-1575043694:7034..7947TCONS_00043445-exon-sc0004228-1575043694:7034..7947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004228supercontigsc0004228:7034..7947 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.839849	0.671369	0.330897	0	0	0.0536266	0	0.302848	0	0.052527	0.243164	0.234604	0.234278	0.0347571	0.412737	0.0613309	1.34286	0.642068	1.26503	0.783893	5.92726	5.22023	1.14543	1.95057	0.910219	2.84046	0.345014	0.294567	0.0558546	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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