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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043413 ID=TCONS_00043413|Name=TCONS_00043413|organism=Clytia hemisphaerica|type=transcript|length=709bp
CTTCTctatattttttcatgttttctttaataaattctgaattttcttgt
ctatatattttcatctttttcttaaTCACATCAGAATGTTTTGAGTAGTG
TCGTTTgcggatttcttttgttttatcatttaTTTCTTTACTCTTATTGC
TTTCAAGATGCTCAGAATATAGTTTTGTTCTCctaaagttattcaaaaac
tTCGTCAATTCAGTTTTGTTTCCCATCACTTTCACATGGATGTATGCAAG
TTGATAAGCATGCAAACCATACATAGCAAAAATATATTCAGGAATATCTT
TAACAGATGacaatttcaataaaatagatttgCCAATTTCACTGTCAACT
ATATTTCCTTCAGAATTACGACTGTGAGAATCAAACAAATAACATTTATT
CTGGTTGTCTTTCAGAATTGCAATACAATAACCTTCAATCAATAGTATAA
CTCCAGTGacgttttctttaaaaaacaaattttcatcaagAAAAGCATCA
ACATGTATTCTACTACCATCTGATAACGTATCTATGTACCCATCGGTTTG
TCTGACAATAGTAATATCAAAACGACAGTTTTCAATCATAATTTGTGCAG
GCAATTCATTGATATACAATGGTCTATTTATGCCAGTATCTTTAAATACT
TTGTCACCCTTGTGTAAGATATAGTCTAGATCATAATCTTTCCAGATATT
AATTTTGNN Run BLAST on NCBI protein sequence of TCONS_00043413-protein >TCONS_00043413-protein ID=TCONS_00043413-protein|Name=TCONS_00043413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
XKINIWKDYDLDYILHKGDKVFKDTGINRPLYINELPAQIMIENCRFDIT
IVRQTDGYIDTLSDGSRIHVDAFLDENLFFKENVTGVILLIEGYCIAILK
DNQNKCYLFDSHSRNSEGNIVDSEIGKSILLKLSSVKDIPEYIFAMYGLH
AYQLAYIHVKVMGNKTELTKFLNNFRRTKLYSEHLESNKSKEINDKTKEI
RKRHYSKHSDVIKKKMKIYRQENSEFIKENMKKYRE Run BLAST on NCBI transcript from alignment at sc0004207:5999..6707 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043413 ID=TCONS_00043413|Name=TCONS_00043413|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at sc0004207:5999..6707 (Clytia hemisphaerica)
NNCAAAATTAATATCTGGAAAGATTATGATCTAGACTATATCTTACACAA
GGGTGACAAAGTATTTAAAGATACTGGCATAAATAGACCATTGTATATCA
ATGAATTGCCTGCACAAATTATGATTGAAAACTGTCGTTTTGATATTACT
ATTGTCAGACAAACCGATGGGTACATAGATACGTTATCAGATGGTAGTAG
AATACATGTTGATGCTTTTcttgatgaaaatttgttttttaaagaaaacg
tCACTGGAGTTATACTATTGATTGAAGGTTATTGTATTGCAATTCTGAAA
GACAACCAGAATAAATGTTATTTGTTTGATTCTCACAGTCGTAATTCTGA
AGGAAATATAGTTGACAGTGAAATTGGcaaatctattttattgaaattgt
CATCTGTTAAAGATATTCCTGAATATATTTTTGCTATGTATGGTTTGCAT
GCTTATCAACTTGCATACATCCATGTGAAAGTGATGGGAAACAAAACTGA
ATTGACGAagtttttgaataactttagGAGAACAAAACTATATTCTGAGC
ATCTTGAAAGCAATAAGAGTAAAGAAAtaaatgataaaacaaaagaaatc
cgcAAACGACACTACTCAAAACATTCTGATGTGAttaagaaaaagatgaa
aatatatagacaagaaaattcagaatttattaaagaaaacatgaaaaaat
atagAGAAG Coding sequence (CDS) from alignment at sc0004207:5999..6707 >TCONS_00043413 ID=TCONS_00043413|Name=TCONS_00043413|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0004207:5999..6707 (Clytia hemisphaerica)
NNCAAAATTAATATCTGGAAAGATTATGATCTAGACTATATCTTACACAA
GGGTGACAAAGTATTTAAAGATACTGGCATAAATAGACCATTGTATATCA
ATGAATTGCCTGCACAAATTATGATTGAAAACTGTCGTTTTGATATTACT
ATTGTCAGACAAACCGATGGGTACATAGATACGTTATCAGATGGTAGTAG
AATACATGTTGATGCTTTTcttgatgaaaatttgttttttaaagaaaacg
tCACTGGAGTTATACTATTGATTGAAGGTTATTGTATTGCAATTCTGAAA
GACAACCAGAATAAATGTTATTTGTTTGATTCTCACAGTCGTAATTCTGA
AGGAAATATAGTTGACAGTGAAATTGGcaaatctattttattgaaattgt
CATCTGTTAAAGATATTCCTGAATATATTTTTGCTATGTATGGTTTGCAT
GCTTATCAACTTGCATACATCCATGTGAAAGTGATGGGAAACAAAACTGA
ATTGACGAagtttttgaataactttagGAGAACAAAACTATATTCTGAGC
ATCTTGAAAGCAATAAGAGTAAAGAAAtaaatgataaaacaaaagaaatc
cgcAAACGACACTACTCAAAACATTCTGATGTGAttaagaaaaagatgaa
aatatatagacaagaaaattcagaatttattaaagaaaacatgaaaaaat
atagAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043413-exon-sc0004207-1491911889:5999..6707 | TCONS_00043413-exon-sc0004207-1491911889:5999..6707 | Clytia hemisphaerica | exon |
| TCONS_00043413-exon-sc0004207-1510915933:5999..6707 | TCONS_00043413-exon-sc0004207-1510915933:5999..6707 | Clytia hemisphaerica | exon |
| TCONS_00043413-exon-sc0004207-1575043694:5999..6707 | TCONS_00043413-exon-sc0004207-1575043694:5999..6707 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004207 | supercontig | sc0004207:5999..6707 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006928 | htUSP_central_domain |
Blast
The following BLAST results are available for this feature:
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