TCONS_00043384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043384
Unique NameTCONS_00043384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043384 ID=TCONS_00043384|Name=TCONS_00043384|organism=Clytia hemisphaerica|type=transcript|length=750bp
GgggagggtggaggatataacaatttcaAGTGAcccggacaacgggtttt
acctcccggacaagcatcagttgaccacCCAGACAAAGCAAATTTACCcc
acaaggcaaattttgatgatttttcgctaccccacggacaatatatcctc
cacccccaatgtacggacattttctggaagagcccgaTTTTATAAAATTT
CCTACACCCGACCGACACCACACTTCCGTTAGCATCGAGAAATGAAAAGA
ATTATAGTGTATTCCTCGAAGAAAATTGTCGGGTGCATTAGAAGGGGAGT
GTTTGCGCCTCCGGTGCCAAAGGCCTTTTTTAAAGTTAAGATACGATCCG
AACTTttattttcatcgaattttaAACTAATATATTCTACTCATTATTTA
TAAAGATTTAAGTAATATGATTATCTTGTTCATCACATTACACTAAATTG
ATTTTAGTTCATTTAATATAGATCTTCACCTCTATCCCTCATCATTTCCA
TATATTCTGCTGAATACATACTCAGTTTCATTTCTTCGCCGGCATAAGGA
GCTGTTAACCATAAATTAGCAATCCATTTCTCACCCTTGCGCACCTCACA
ACCACCATGTAAAGACCAATCATCAATCTCTCCCAACCAGCCTGTGTTCG
CATCAACATGATGGTTATACCAGGCTACAGCTGATCTTTTCTGGGGCTTC
ACAACAAGATTTGAATCGTAACAATGTTCATTCAAGTTAAATAAATCTTT
Run BLAST on NCBI

transcript from alignment at sc0004179:1320..2069

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043384 ID=TCONS_00043384|Name=TCONS_00043384|organism=Clytia hemisphaerica|type=transcript|length=750bp|location=Sequence derived from alignment at sc0004179:1320..2069 (Clytia hemisphaerica)
AAAGATTTATTTAACTTGAATGAACATTGTTACGATTCAAATCTTGTTGT
GAAGCCCCAGAAAAGATCAGCTGTAGCCTGGTATAACCATCATGTTGATG
CGAACACAGGCTGGTTGGGAGAGATTGATGATTGGTCTTTACATGGTGGT
TGTGAGGTGCGCAAGGGTGAGAAATGGATTGCTAATTTATGGTTAACAGC
TCCTTATGCCGGCGAAGAAATGAAACTGAGTATGTATTCAGCAGAATATA
TGGAAATGATGAGGGATAGAGGTGAAGATCTATATTAAATGAACTAAAAT
CAATTTAGTGTAATGTGATGAACAAGATAATCATATTACTTAAATCTTTA
TAAATAATGAGTAGAATATATTAGTTtaaaattcgatgaaaataaAAGTT
CGGATCGTATCTTAACTTTAAAAAAGGCCTTTGGCACCGGAGGCGCAAAC
ACTCCCCTTCTAATGCACCCGACAATTTTCTTCGAGGAATACACTATAAT
TCTTTTCATTTCTCGATGCTAACGGAAGTGTGGTGTCGGTCGGGTGTAGG
AAATTTTATAAAAtcgggctcttccagaaaatgtccgtacattgggggtg
gaggatatattgtccgtggggtagcgaaaaatcatcaaaatttgccttgt
ggGGTAAATTTGCTTTGTCTGGgtggtcaactgatgcttgtccgggaggt
aaaacccgttgtccgggTCACTtgaaattgttatatcctccaccctcccC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027089XLOC_027089Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043384-exon-sc0004179-1491911889:1320..2069TCONS_00043384-exon-sc0004179-1491911889:1320..2069Clytia hemisphaericaexon
TCONS_00043384-exon-sc0004179-1510915933:1320..2069TCONS_00043384-exon-sc0004179-1510915933:1320..2069Clytia hemisphaericaexon
TCONS_00043384-exon-sc0004179-1575043694:1320..2069TCONS_00043384-exon-sc0004179-1575043694:1320..2069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004179supercontigsc0004179:1320..2069 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.191847	0.0742509	0	1.27516	1.17624	9.24698	7.60009	0.860257	0.634298	3.41693	1.81177	2.37992	1.95251	2.28559	2.92759	2.05191	2.04311	2.04287	3.18645	1.3665	1.90299	1.44881	1.03891	2.04184	3.7429	0.553408	0	0.0729152	0
Blast
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BLAST of TCONS_00043384 vs. Swiss-Prot (Human)
Match: P4HTM (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.233e-17
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = -1 
Query:  472 DLFNLNEHCYDSNLVVKPQKRSAVAWYNHHVDANTGWLGEIDDWSLHGGCEVRKGEKWIANLWLTAPYAGEEMKLSMYSAEYMEMMRDRGED 747
            DL +   HC   NL VKPQ+ +AV WYN+  D   GW+G++DD+SLHGGC V +G KWIAN W+    +    + +++  E   + R+ G D
Sbjct:  396 DLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQ-GWVGDVDDYSLHGGCLVTRGTKWIANNWINVDPS--RARQALFQQEMARLAREGGTD 484
The following BLAST results are available for this feature:
BLAST of TCONS_00043384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P4HTM2.233e-1742.39Transmembrane prolyl 4-hydroxylase OS=Homo sapiens... [more]
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