TCONS_00043381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043381
Unique NameTCONS_00043381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043381 ID=TCONS_00043381|Name=TCONS_00043381|organism=Clytia hemisphaerica|type=transcript|length=571bp
TCTAGGTACTGAAAGAAGTAACGGTCAAGGCTCAAGCAGCCGAGAAAGTC
AAAGCTTCTGTGCAAACAGTCAAAGACAAGGCACAAGCTATCGTCGAAGA
AATTAATGCGGACAAAGTCATTGCAGAGGGAAAACTAGAAGCGGCTCGGC
CTGCCTTAGAAGAAGCAGAAAAGGCTTTACAGACAATCAAACCAGCGCAT
ATTTCGACTGTTCGTAAATTAGCCAAACCACCACATTTGATTATGAGAAT
TATGGATGCTGTTTTGCTTCTCTTCCGTCGCTCTTTGTTAACAGTTCAAG
CCGACCCTGCTTTTCCTTGTCCTGTCCCTTCATGGGCTGAATCACTCAAG
CTGATGAGTTCTTCAACCTTCTTGCATAATTTGATGACCTTTGATAAAGA
TACTATTAATGCAGAAATGGTGGAGTTCTTGGAGCCCTATCTTACGATGC
CTGATTATACTTTGGAAGGAGCTAAAAAGAGTTGTGGTGATGTAGCAGGA
TTGCTATCATGGACCAGAGCTATGAGTTTCTTCTACGGTGTCAACAAAGA
AGTATTACCGTTAAAGGTAAA
Run BLAST on NCBI

protein sequence of TCONS_00043381-protein

>TCONS_00043381-protein ID=TCONS_00043381-protein|Name=TCONS_00043381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MRIMDAVLLLFRRSLLTVQADPAFPCPVPSWAESLKLMSSSTFLHNLMTF
DKDTINAEMVEFLEPYLTMPDYTLEGAKKSCGDVAGLLSWTRAMSFFYGV
NKEVLPLKV
Run BLAST on NCBI

transcript from alignment at sc0004177:5939..7979+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043381 ID=TCONS_00043381|Name=TCONS_00043381|organism=Clytia hemisphaerica|type=transcript|length=2041bp|location=Sequence derived from alignment at sc0004177:5939..7979+ (Clytia hemisphaerica)
TCTAGGTACTGAAAGAAGTAACGGTCAAGGCTCAAGCAGCCGAGAAAGTC
AAAGCTTCTGTGCAAACAGTCAAAGACAAGGCACAAGCTATCGTCGAAGA
AATTAATGTAAGTTTATTAATCAGATCAATTGGAGATTTTTGCATTGTTC
GGTGAACAACATCAACCagtgaactttttttttagttGCATTGTTTGCAG
CTGCGACTTTATGGTAGTAACTCCTACCTTAAATCGGATAAACTCTTATT
AAACGAGTCCGTAAAATGCGAACACTGATAGGATTATGGATAACACATAA
CAACAAATTACACGGTCAAAGTAAACGTAGTGTAAACAAGTATTATGCTT
TTATTTGCAATTTAAGTAAGATtgttcaaaatttaagtcaCATACcatat
tacttcaaataaacgcctTGGGCCTTTATTAAATCGTTTGTTTTTTTAGG
AGNTCACATACcatattacttcaaataaacgcctTGGGCCTTTATTAAAT
CGTTTGTTTTTTTAGGAGGGGCATTTATTCGAAGGGTGCGTTTAGAAGAa
tggggcgtttattcgaagttaTACGGTATCTGAATAAAGTCAAGTATAAT
AAAAATGTTGTCATACTCACCATGANGGGGCATTTATTCGAAGGGTGCGT
TTAGAAGAatggggcgtttattcgaagttaTACGGTATCTGAATAAAGTC
AAGTATAATAAAAATGTTCTCATACTCACCATGGGTATTCTTTATTTCAT
ATTATAACTTCAGGCGGACAAAGTCATTGCAGAGGGAAAACTAGAAGCGG
CTCGGCCTGCCTTAGAAGAAGCAGAAAAGGCTTTACAGGTATGATTTCCC
CAATTTCCCCTGTTATAATAGActaatagttttcaaaaattgattctCTA
TTTTTCAGGTACTGTCAATAATTATCTCTTGAGAGTCTTAGCTCCATATC
AAAATTCTTGAAGTCACGACACAATAATACAATAAATTCATGGTAGCCAA
AATGATACAGAAAGTTTTCCACATATTCTATACACCAAGTCAAATATTAT
AAGTCATCATTCCTCTAGATTTAGTAAGTAACACGAAATATCTAAACCCG
TTGTTTCTTTGCAGACAATCAAACCAGCGCATATTTCGACTGTTCGTAAA
TTAGCCAAACCACCACATTTGATTATGAGAATTATGGATGCTGTTTTGCT
TCTCTTCCGTCGCTCTTTGTTAACAGTTCAAGCCGACCCTGCTTTTCCTT
GTCCTGTCCCTTCATGGGCTGAATCACTCAAGGTGCAATATTTTATATTA
ACGATTTTATTATTATTGTGGAAAAGGTTCCTAAAAGATGGTCTACACAC
AACTCCCCTTGCATGTTTTCTTCAAACACTTGTAGTTACTTTAATCCCCA
TTTTTGAAAGTTAACATTGATATATTTTGGAGGTTAAACGATGCTTCAGG
AGTGCTCTACAGGGTGAAAGAGCATGatacaattttaagaaaaacatgtt
AAAGTGACGCGAATCTCTTCATATTGTTTAATATTTCTAGCTGATGAGTT
CTTCAACCTTCTTGCATAATTTGATGACCTTTGATAAAGATACTATTAAT
GCAGAAATGGTGGAGTTCTTGGAGCCCTATCTTACGATGCCTGATTATAC
TTTGGAAGGAGCTAAAAAGGTAAGAATATTCGTTGTATTTTTCTCTTCCC
CGTTTTGGTGTTAAAAGGGACATTGTCTAACGTTCTCTACCAACTTGGTA
GAGTGAACTGATTGGCTGGGATggaatttttatcaatttgGGTTTTTCTT
CTCACTCGCGATAAGTGCAGCAAGCCTCCGTCATTTTTTCTAATGAGAAA
GAAATTATAACATTCAGTCTATCATAAATGATTTCTGGTTTTATTTTAGT
AGAATGTCTTAAAATTAATGTTCGTTTATGCGTCAACTTTATCTTTCAGA
GTTGTGGTGATGTAGCAGGATTGCTATCATGGACCAGAGCTATGAGTTTC
TTCTACGGTGTCAACAAAGAAGTATTACCGTTAAAGGTAAA

Coding sequence (CDS) from alignment at sc0004177:5939..7979+

>TCONS_00043381 ID=TCONS_00043381|Name=TCONS_00043381|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0004177:5939..7979+ (Clytia hemisphaerica)
ATGAGAATTATGGATGCTGTTTTGCTTCTCTTCCGTCGCTCTTTGTTAAC
AGTTCAAGCCGACCCTGCTTTTCCTTGTCCTGTCCCTTCATGGGCTGAAT
CACTCAAGCTGATGAGTTCTTCAACCTTCTTGCATAATTTGATGACCTTT
GATAAAGATACTATTAATGCAGAAATGGTGGAGTTCTTGGAGCCCTATCT
TACGATGCCTGATTATACTTTGGAAGGAGCTAAAAAGAGTTGTGGTGATG
TAGCAGGATTGCTATCATGGACCAGAGCTATGAGTTTCTTCTACGGTGTC
AACAAAGAAGTATTACCGTTAAAGGTAATGAGAATTATGGATGCTGTTTT
GCTTCTCTTCCGTCGCTCTTTGTTAACAGTTCAAGCCGACCCTGCTTTTC
CTTGTCCTGTCCCTTCATGGGCTGAATCACTCAAGCTGATGAGTTCTTCA
ACCTTCTTGCATAATTTGATGACCTTTGATAAAGATACTATTAATGCAGA
AATGGTGGAGTTCTTGGAGCCCTATCTTACGATGCCTGATTATACTTTGG
AAGGAGCTAAAAAGAGTTGTGGTGATGTAGCAGGATTGCTATCATGGACC
AGAGCTATGAGTTTCTTCTACGGTGTCAACAAAGAAGTATTACCGTTAAA
GGTAATGAGAATTATGGATGCTGTTTTGCTTCTCTTCCGTCGCTCTTTGT
TAACAGTTCAAGCCGACCCTGCTTTTCCTTGTCCTGTCCCTTCATGGGCT
GAATCACTCAAGCTGATGAGTTCTTCAACCTTCTTGCATAATTTGATGAC
CTTTGATAAAGATACTATTAATGCAGAAATGGTGGAGTTCTTGGAGCCCT
ATCTTACGATGCCTGATTATACTTTGGAAGGAGCTAAAAAGAGTTGTGGT
GATGTAGCAGGATTGCTATCATGGACCAGAGCTATGAGTTTCTTCTACGG
TGTCAACAAAGAAGTATTACCGTTAAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027086XLOC_027086Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043381-proteinTCONS_00043381-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043381-exon-sc0004177-1491911889:5939..6045TCONS_00043381-exon-sc0004177-1491911889:5939..6045Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1510915933:5939..6045TCONS_00043381-exon-sc0004177-1510915933:5939..6045Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1575043694:5939..6045TCONS_00043381-exon-sc0004177-1575043694:5939..6045Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1491911889:6702..6776TCONS_00043381-exon-sc0004177-1491911889:6702..6776Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1510915933:6702..6776TCONS_00043381-exon-sc0004177-1510915933:6702..6776Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1575043694:6702..6776TCONS_00043381-exon-sc0004177-1575043694:6702..6776Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1491911889:7053..7220TCONS_00043381-exon-sc0004177-1491911889:7053..7220Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1510915933:7053..7220TCONS_00043381-exon-sc0004177-1510915933:7053..7220Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1575043694:7053..7220TCONS_00043381-exon-sc0004177-1575043694:7053..7220Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1491911889:7479..7607TCONS_00043381-exon-sc0004177-1491911889:7479..7607Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1510915933:7479..7607TCONS_00043381-exon-sc0004177-1510915933:7479..7607Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1575043694:7479..7607TCONS_00043381-exon-sc0004177-1575043694:7479..7607Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1491911889:7888..7979TCONS_00043381-exon-sc0004177-1491911889:7888..7979Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1510915933:7888..7979TCONS_00043381-exon-sc0004177-1510915933:7888..7979Clytia hemisphaericaexon
TCONS_00043381-exon-sc0004177-1575043694:7888..7979TCONS_00043381-exon-sc0004177-1575043694:7888..7979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004177supercontigsc0004177:5939..7979 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.80224	3.34495	1.88642	1.30276	0.52866	1.25326	0.378002	0.471841	0.578107	1.02297	0.595752	0.456895	0.521439	0.20307	1.05736	1.85136	0.515003	1.43277	0.729269	0.545091	1.42135	1.52523	2.13504	2.14538	112.589	81.7951	0.403152	0.717091	1.19655	1.10827
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024743Dynein_HC_stalk
Blast
[Close]
BLAST of TCONS_00043381 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3)

HSP 1 Score: 231.876 bits (590), Expect = 3.788e-69
Identity = 126/187 (67.38%), Postives = 150/187 (80.21%), Query Frame = 3 
Query:    6 VLKEVTVKAQAAEKVKASVQTVKDKAQAIVEEINADKVIAEGKXXXXXXXXXXXXXXXQTIKPAHISTVRKLAKPPHLIMRIMDAVLLLFRRSLLTVQADPAFPCPVPSWAESLKLMSSSTFLHNLMTFDKDTINAEMVEFLEPYLTMPDYTLEGAKKSCGDVAGLLSWTRAMSFFYGVNKEVLPLK 566
            VLKEVT+KAQAAEKVKA VQ VKD+AQAIV+ I+ DK IAE KLEAA+PALEEAE ALQTI+P+ I+TVR L +PPHLIMRIMD VLLLF+R +  V+ D    C +PSW ESLKLM++  FL NL  F KDTIN E++EFL PY  MPDY +E AK+ CG+VAGL SWT+AM+ F+ +NKEVLPLK
Sbjct: 3241 VLKEVTMKAQAAEKVKAEVQKVKDRAQAIVDSISKDKAIAEEKLEAAKPALEEAEAALQTIRPSDIATVRTLGRPPHLIMRIMDCVLLLFQRKVSAVKIDLEKSCTMPSWQESLKLMTAGNFLQNLQQFPKDTINEEVIEFLSPYFEMPDYNIETAKRVCGNVAGLCSWTKAMASFFSINKEVLPLK 3427
The following BLAST results are available for this feature:
BLAST of TCONS_00043381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH53.788e-6967.38Dynein heavy chain 5, axonemal OS=Homo sapiens GN=... [more]
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