TCONS_00043380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043380
Unique NameTCONS_00043380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043380 ID=TCONS_00043380|Name=TCONS_00043380|organism=Clytia hemisphaerica|type=transcript|length=1232bp
acgaaTGCGTGTTAATGCAGAACTCTTCGGAATGGGACCTTTCCCTGACT
GCTAAgcttaaaaaaaacagtttgaaaacaaatcaatccctatttgaatt
catttttcagataaagagtttcttgtctttttcttcaaaagacTAAGACT
CAACAAAACTGGGAAGTATGCAGACGATTTTCCTTACATTTCAAGATGTG
GACCTGAAGTAAATTATATAAGATGTGAAAGTAAGCCAATAGTATTCACA
GATATCATTCCTGATTCACAAAACCCTGATTCTGATCAAATTGTTTTGAA
TGGAATTGGTGATAAAATGGCTTACTCTTTTGAACCTTCAAAACTTTGTA
TGTTACCTAAGAATGGAAGGGTATATCACCCAGCCCCAAAGAGAGTTGGA
GGTGCAGGGATTCTGAAAACAAGTTTAGCAATCGAGTTCAGTTCATATTT
CACCTTTGATGACAATTGCAGTGATGAGGATCCACCAACACATTTCGAAT
GGAAAGGAAAAACATACCAACTTGAAAACGAGCTCTGGAATtccctgaaa
aatgaaaatgtattAGGAGATGAAGATTGATATTTTAAAGGTGTACCTCG
CTGACTAATTTTGTAGATAGTGAATATTTTTATGAACTAATTTATTTTTC
CTGATATGAAACCAGTTGTTCTAAAACATgcattaatttttttagaattt
caaaatataaatagCCTCATCAAGCTTTAAGTGTTTGCCTTTTCCCTTGT
TGTAAAGAGTTTTAATGTGATTTCGCTTTATATTTTTAGCAGAAAAATGA
ATTGtaatattttaagaaaagtGACTTTGTCAACTAGAATGATGTCGACA
GTGTCAAAACGTTTAGAAGGAAAAGTTGCAATAGTAACTGCATCTACAGC
TGGAATTGGTTATGCAATCGCAGAGGGGCTAGCAGAAAATGGTGCAAAAG
TTGTTATTAGTAGTCGTAAAGAGACAAATGTAGAAGAAGCACTGCAACAA
TTGAAATCAAAAGATTTGGAAGTTTCTGGATGTGTTTGCCATGTTGCGAA
AGAATGCGATCGGACAAAGCTCTTAGAAGAGACATTAAAACAATATGGAA
AACTTGATATATTGGTGAACAATGCAGGAATCAGTCCAGCTTTTGGTCCA
CTGCTCAAGGTATGTCCATTTCAAAGTTTCTGAATTTGTTTCTAAAATCT
tgcttttttaataatttctctCTATTTATTAG
Run BLAST on NCBI

protein sequence of TCONS_00043380-protein

>TCONS_00043380-protein ID=TCONS_00043380-protein|Name=TCONS_00043380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MNCNILRKVTLSTRMMSTVSKRLEGKVAIVTASTAGIGYAIAEGLAENGA
KVVISSRKETNVEEALQQLKSKDLEVSGCVCHVAKECDRTKLLEETLKQY
GKLDILVNNAGISPAFGPLLKVCPFQSF
Run BLAST on NCBI

transcript from alignment at sc0004177:3128..4716+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043380 ID=TCONS_00043380|Name=TCONS_00043380|organism=Clytia hemisphaerica|type=transcript|length=1589bp|location=Sequence derived from alignment at sc0004177:3128..4716+ (Clytia hemisphaerica)
acgaaTGCGTGTTAATGCAGAACTCTTCGGAATGGGACCTTTCCCTGACT
GCTAAgcttaaaaaaaacagtttgaaaacaaatcaatccctatttgaatt
catttttcagataaagagtttcttgtctttttcttcaaaagacTAAGACT
CAACAAAACTGGGAAGTATGCAGACGATTTTCCTTACATTTCAAGATGTG
GACCTGAAGTAAATTATATAAGATGTGAAAGTAAGCCAATAGTATTCACA
GATATCATTCCTGATTCACAAAACCCTGATTCTGATCAAATTGTTTTGAA
TGGAATTGGTGATAAAATGGCTTACTCTTTTGAACCTTCAAAACTTTGTA
TGTTACCTAAGAATGGAAGGGTATATCACCCAGCCCCAAAGAGAGTTGGA
GGTGCAGGGATTCTGAAAACAAGTTTAGCAATCGAGTTCAGTTCATATTT
CACCTTTGATGACAATTGCAGTGATGAGGATCCACCAACACATTTCGAAT
GGAAAGGAAAAACATACCAACTTGAAAACGAGCTCTGGAATtccctgaaa
aatgaaaatgtattAGGAGATGAAGATTGATATTTTAAAGGTGTACCTCG
CTGACTAATTTTGTAGATAGTGAATATTTTTATGAACTAATTTATTTTTC
CTGATATGAAACCAGTTGTTCTAAAACATgcattaatttttttagaattt
caaaatataaatagCCTCATCAAGCTTTAAGTGTTTGCCTTTTCCCTTGT
TGTAAAGAGTTTTAATGTGATTTCGCTTTATATTTTTAGCAGAAAAATGA
ATTGtaatattttaagaaaagtGACTTTGTCAACTAGAATGATGTCGACA
GTGTCAAAACGTTTAGAAGGAAAAGTTGCAATAGTAACTGCATCTACAGC
TGGGTAAAcatcattttcatatttttttatctcTAAAAAAGTAATTAGAA
AAGAAACCAATGAACAAGTAACAATTTTTGGACCCTTTGTTATTATTAGC
AAACATGAGAATACTCTAATTATTTTACTTTGAAGGTACTTTGGCATGCA
TTGGGTTGTGAAAATTCTCAGAATTTAGTTTTCATTAGAAAATTCAACTT
TTATTCAAATACAGAATTGGTTATGCAATCGCAGAGGGGCTAGCAGAAAA
TGGTGCAAAAGTTGTTATTAGTAGTCGTAAAGAGACAAATGTAGAAGAAG
CACTGCAACAATTGAAATCAAAAGATTTGGAAGTTTCTGGATGTGTTTGC
CATGTTGCGAAAGAATGCGATCGGACAAAGCTCTTAGAAGAGGTGAAATT
TAATACTTACAGTAActcaaattttacatttttaacagttttcttatatt
tttaaaCACGTGTATGAGTATtcatcttttataagaatttcaaaatcaga
ttttttATCACCTCTAACAAATACTTTTTTCCTTAAAGACATTAAAACAA
TATGGAAAACTTGATATATTGGTGAACAATGCAGGAATCAGTCCAGCTTT
TGGTCCACTGCTCAAGGTATGTCCATTTCAAAGTTTCTGAATTTGTTTCT
AAAATCTtgcttttttaataatttctctCTATTTATTAG

Coding sequence (CDS) from alignment at sc0004177:3128..4716+

>TCONS_00043380 ID=TCONS_00043380|Name=TCONS_00043380|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at sc0004177:3128..4716+ (Clytia hemisphaerica)
ATGAATTGtaatattttaagaaaagtGACTTTGTCAACTAGAATGATGTC
GACAGTGTCAAAACGTTTAGAAGGAAAAGTTGCAATAGTAACTGCATCTA
CAGCTGGAATTGGTTATGCAATCGCAGAGGGGCTAGCAGAAAATGGTGCA
AAAGTTGTTATTAGTAGTCGTAAAGAGACAAATGTAGAAGAAGCACTGCA
ACAATTGAAATCAAAAGATTTGGAAGTTTCTGGATGTGTTTGCCATGTTG
CGAAAGAATGCGATCGGACAAAGCTCTTAGAAGAGACATTAAAACAATAT
GGAAAACTTGATATATTGGTGAACAATGCAGGAATCAGTCCAGCTTTTGG
TCCACTGCTCAAGGTATGTCCATTTCAAAGTTTCTGAATGAATTGtaata
ttttaagaaaagtGACTTTGTCAACTAGAATGATGTCGACAGTGTCAAAA
CGTTTAGAAGGAAAAGTTGCAATAGTAACTGCATCTACAGCTGGAATTGG
TTATGCAATCGCAGAGGGGCTAGCAGAAAATGGTGCAAAAGTTGTTATTA
GTAGTCGTAAAGAGACAAATGTAGAAGAAGCACTGCAACAATTGAAATCA
AAAGATTTGGAAGTTTCTGGATGTGTTTGCCATGTTGCGAAAGAATGCGA
TCGGACAAAGCTCTTAGAAGAGACATTAAAACAATATGGAAAACTTGATA
TATTGGTGAACAATGCAGGAATCAGTCCAGCTTTTGGTCCACTGCTCAAG
GTATGTCCATTTCAAAGTTTCTGAATGAATTGtaatattttaagaaaagt
GACTTTGTCAACTAGAATGATGTCGACAGTGTCAAAACGTTTAGAAGGAA
AAGTTGCAATAGTAACTGCATCTACAGCTGGAATTGGTTATGCAATCGCA
GAGGGGCTAGCAGAAAATGGTGCAAAAGTTGTTATTAGTAGTCGTAAAGA
GACAAATGTAGAAGAAGCACTGCAACAATTGAAATCAAAAGATTTGGAAG
TTTCTGGATGTGTTTGCCATGTTGCGAAAGAATGCGATCGGACAAAGCTC
TTAGAAGAGACATTAAAACAATATGGAAAACTTGATATATTGGTGAACAA
TGCAGGAATCAGTCCAGCTTTTGGTCCACTGCTCAAGGTATGTCCATTTC
AAAGTTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027085XLOC_027085Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043380-proteinTCONS_00043380-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043380-exon-sc0004177-1491911889:3128..4030TCONS_00043380-exon-sc0004177-1491911889:3128..4030Clytia hemisphaericaexon
TCONS_00043380-exon-sc0004177-1510915933:3128..4030TCONS_00043380-exon-sc0004177-1510915933:3128..4030Clytia hemisphaericaexon
TCONS_00043380-exon-sc0004177-1575043694:3128..4030TCONS_00043380-exon-sc0004177-1575043694:3128..4030Clytia hemisphaericaexon
TCONS_00043380-exon-sc0004177-1491911889:4242..4419TCONS_00043380-exon-sc0004177-1491911889:4242..4419Clytia hemisphaericaexon
TCONS_00043380-exon-sc0004177-1510915933:4242..4419TCONS_00043380-exon-sc0004177-1510915933:4242..4419Clytia hemisphaericaexon
TCONS_00043380-exon-sc0004177-1575043694:4242..4419TCONS_00043380-exon-sc0004177-1575043694:4242..4419Clytia hemisphaericaexon
TCONS_00043380-exon-sc0004177-1491911889:4566..4716TCONS_00043380-exon-sc0004177-1491911889:4566..4716Clytia hemisphaericaexon
TCONS_00043380-exon-sc0004177-1510915933:4566..4716TCONS_00043380-exon-sc0004177-1510915933:4566..4716Clytia hemisphaericaexon
TCONS_00043380-exon-sc0004177-1575043694:4566..4716TCONS_00043380-exon-sc0004177-1575043694:4566..4716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004177supercontigsc0004177:3128..4716 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.398	36.325	30.6245	30.5019	15.5985	11.4902	12.5127	14.0425	13.2804	13.2956	9.98608	8.64139	9.62061	9.28385	15.916	18.3562	16.9366	15.6062	8.44664	9.97024	12.9618	12.5923	22.7136	22.3844	4.38487	5.36519	14.1121	10.8132	19.4161	19.7752
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
[Close]
BLAST of TCONS_00043380 vs. Swiss-Prot (Human)
Match: CH082 (UPF0598 protein C8orf82 OS=Homo sapiens GN=C8orf82 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.278e-34
Identity = 59/144 (40.97%), Postives = 90/144 (62.50%), Query Frame = 2 
Query:  104 FSDKEFLVFFFKRLRLNKTGKYADDFPYISRCGPEVNYIRCESKPIVFTDIIPDSQNPDSDQIVLNGIGDKMAYSFEPSKLCMLPKNGRVYHPAPKRVGGAGILKTSLAIEFSSYFTFDDNCSDEDPPTHFEWKGKTYQLENEL 535
            F D +FLV FF RLR N++G+Y   FP++S CG E N++RCE +P+VFT ++     P   ++   G G+ +A  FEP++L  L  NGR+YHPAP+R GG G+++++LA E S+ F +         P+H  W+G+   L  +L
Sbjct:   67 FKDPQFLVTFFSRLRPNRSGRYEAAFPFLSPCGRERNFLRCEDRPVVFTHLLTADHGP--PRLSYCGGGEALAVPFEPARLLPLAANGRLYHPAPERAGGVGLVRSALAFELSACFEYGPGAPAL--PSHVRWQGRRLALTMDL 206
The following BLAST results are available for this feature:
BLAST of TCONS_00043380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CH0821.278e-3440.97UPF0598 protein C8orf82 OS=Homo sapiens GN=C8orf82... [more]
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