|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043378 ID=TCONS_00043378|Name=TCONS_00043378|organism=Clytia hemisphaerica|type=transcript|length=1244bp
TTAGTATTTATGGATTGCCTTCTCGGGTTCGCACTGATAAAGGCAAAGAA
AATGTTAGTGTTGCTGATTATATGTTACTTCATAGGGGATTGGATCGAGG
AAGTATAATAACTGGTAAAAGTACACATAACCAGAGAATAGAAAGGTTAT
GGCGTGATGTTTGGAATGGAGTTTCTGGATTTTTTTATGATCTGTTCTAT
TTCATGGAAGATCAAGGAATCCTCGATCCTTTGAATGAACTTCACTTGTC
TTTATTGCATTATATTTATATACCACAAATTAACATAAAACTACAACAGT
GGACATCTGCTTGGTCATCACATAGATTGCGTACTGTGAAATCCTCTCCA
ATTAAACTTTGGACTTCGGGTCAACTTTTAAATCCTGTTGATCCAGTATC
AGTTGATAATTTTTATGGCATAGAAGGGATAGTTCGTAACAATTTTGAGG
ATTTAAACCATGCAAGCAACATCAGTGAACGTCCTATATTTGATTTTGAT
GGTGAACAAATTATTGGTGAGTTCTATGATCAAATCAATGATGTGATTGG
ACCTTTAGAACATGTAATGGAAAACAATCATGGTATTGCAGCCTACCTTG
CTGCACTTGAAGtggttgaaaatttattttgaaaatcaaaaaatctttct
ttaatgaGGCTGGCCTTTAAAATGTTGGATTACTCTCACCTGACCTAGGT
TTTAGAGGAGCGAGGGTCAGACAAATAGTAGGtcagaaaagaaatttgac
tACAAAATTTCTATCCTGGATGtgttcatattttttcatttgaaacctta
ctttttaagaaacattgaTATGCTGATTGTGGGGTAGGAAGCAAGGTATG
AGTAGAcagtttaagttttttttaggTTTGCAGTTTTTGAGTCAGGTCAG
TCGAGTGATGGCAAACCAACACAGATTTTTTTAACTAGCCTAATAATGTA
CCATTATTTTGGAATTATGTTTATATATTAGATTTAGGTTGGGTCCTGTA
AttaattttacttaaaattcaaattttcctGTTAATATTTCAAACTTGTA
GGGCACTAGAACTTCATACTCGCAGTGATACTCGCAGATAGGAGCGTGCT
GCTACAGGAGCGTATTGCCTGGTGTtgctaaaaaaaaaagaagattgttA
AAGATTAATGCATTTTTCATGTTGTTTTCGTCGTTTTGTATCgtatataa
atctttttttaagtCAATTATTCTTGCTTTTAATGGTGAATTTC Run BLAST on NCBI protein sequence of TCONS_00043378-protein >TCONS_00043378-protein ID=TCONS_00043378-protein|Name=TCONS_00043378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
SIYGLPSRVRTDKGKENVSVADYMLLHRGLDRGSIITGKSTHNQRIERLW
RDVWNGVSGFFYDLFYFMEDQGILDPLNELHLSLLHYIYIPQINIKLQQW
TSAWSSHRLRTVKSSPIKLWTSGQLLNPVDPVSVDNFYGIEGIVRNNFED
LNHASNISERPIFDFDGEQIIGEFYDQINDVIGPLEHVMENNHGIAAYLA
ALEVVENLF Run BLAST on NCBI transcript from alignment at sc0004175:3764..5007 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043378 ID=TCONS_00043378|Name=TCONS_00043378|organism=Clytia hemisphaerica|type=transcript|length=1244bp|location=Sequence derived from alignment at sc0004175:3764..5007 (Clytia hemisphaerica)
GAAATTCACCATTAAAAGCAAGAATAATTGacttaaaaaaagatttatat
acGATACAAAACGACGAAAACAACATGAAAAATGCATTAATCTTTaacaa
tcttcttttttttttagcaACACCAGGCAATACGCTCCTGTAGCAGCACG
CTCCTATCTGCGAGTATCACTGCGAGTATGAAGTTCTAGTGCCCTACAAG
TTTGAAATATTAACaggaaaatttgaattttaagtaaaattaaTTACAGG
ACCCAACCTAAATCTAATATATAAACATAATTCCAAAATAATGGTACATT
ATTAGGCTAGTTAAAAAAATCTGTGTTGGTTTGCCATCACTCGACTGACC
TGACTCAAAAACTGCAAAcctaaaaaaaacttaaactgTCTACTCATACC
TTGCTTCCTACCCCACAATCAGCATAtcaatgtttcttaaaaagtaaggt
ttcaaatgaaaaaatatgaacaCATCCAGGATAGAAATTTTGTagtcaaa
tttcttttctgaCCTACTATTTGTCTGACCCTCGCTCCTCTAAAACCTAG
GTCAGGTGAGAGTAATCCAACATTTTAAAGGCCAGCCtcattaaagaaag
attttttgattttcaaaataaattttcaaccaCTTCAAGTGCAGCAAGGT
AGGCTGCAATACCATGATTGTTTTCCATTACATGTTCTAAAGGTCCAATC
ACATCATTGATTTGATCATAGAACTCACCAATAATTTGTTCACCATCAAA
ATCAAATATAGGACGTTCACTGATGTTGCTTGCATGGTTTAAATCCTCAA
AATTGTTACGAACTATCCCTTCTATGCCATAAAAATTATCAACTGATACT
GGATCAACAGGATTTAAAAGTTGACCCGAAGTCCAAAGTTTAATTGGAGA
GGATTTCACAGTACGCAATCTATGTGATGACCAAGCAGATGTCCACTGTT
GTAGTTTTATGTTAATTTGTGGTATATAAATATAATGCAATAAAGACAAG
TGAAGTTCATTCAAAGGATCGAGGATTCCTTGATCTTCCATGAAATAGAA
CAGATCATAAAAAAATCCAGAAACTCCATTCCAAACATCACGCCATAACC
TTTCTATTCTCTGGTTATGTGTACTTTTACCAGTTATTATACTTCCTCGA
TCCAATCCCCTATGAAGTAACATATAATCAGCAACACTAACATTTTCTTT
GCCTTTATCAGTGCGAACCCGAGAAGGCAATCCATAAATACTAA Coding sequence (CDS) from alignment at sc0004175:3764..5007 >TCONS_00043378 ID=TCONS_00043378|Name=TCONS_00043378|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0004175:3764..5007 (Clytia hemisphaerica)
tcaaaataaattttcaaccaCTTCAAGTGCAGCAAGGTAGGCTGCAATAC
CATGATTGTTTTCCATTACATGTTCTAAAGGTCCAATCACATCATTGATT
TGATCATAGAACTCACCAATAATTTGTTCACCATCAAAATCAAATATAGG
ACGTTCACTGATGTTGCTTGCATGGTTTAAATCCTCAAAATTGTTACGAA
CTATCCCTTCTATGCCATAAAAATTATCAACTGATACTGGATCAACAGGA
TTTAAAAGTTGACCCGAAGTCCAAAGTTTAATTGGAGAGGATTTCACAGT
ACGCAATCTATGTGATGACCAAGCAGATGTCCACTGTTGTAGTTTTATGT
TAATTTGTGGTATATAAATATAATGCAATAAAGACAAGTGAAGTTCATTC
AAAGGATCGAGGATTCCTTGATCTTCCATGAAATAGAACAGATCATAAAA
AAATCCAGAAACTCCATTCCAAACATCACGCCATAACCTTTCTATTCTCT
GGTTATGTGTACTTTTACCAGTTATTATACTTCCTCGATCCAATCCCCTA
TGAAGTAACATATAATCAGCAACACTAACATTTTCTTTGCCTTTATCAGT
GCGAACCCGAGAAGGCAATCCATAAATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043378-exon-sc0004175-1491911889:3764..5007 | TCONS_00043378-exon-sc0004175-1491911889:3764..5007 | Clytia hemisphaerica | exon |
| TCONS_00043378-exon-sc0004175-1510915933:3764..5007 | TCONS_00043378-exon-sc0004175-1510915933:3764..5007 | Clytia hemisphaerica | exon |
| TCONS_00043378-exon-sc0004175-1575043694:3764..5007 | TCONS_00043378-exon-sc0004175-1575043694:3764..5007 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004175 | supercontig | sc0004175:3764..5007 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
