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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043373 ID=TCONS_00043373|Name=TCONS_00043373|organism=Clytia hemisphaerica|type=transcript|length=540bp
TGGAAATTGGTCTATTTGGTATAACAGTTCTTGTGATGCGAGTTGTGATA
CTGGTTATTTGACAATGGAAAGATTCTGCAACGATTCAGCGCCTGTCAAC
AATGGAGACAAATGTGAAACAGAAGGTGGAGAACGTGATCTGTATGAATC
CAAACGGGTTACATGTAATACTCACCCATGTCCTCaaAGTGGTAATTGGA
CTGAATGGACTGCATGGACTGTGTGTGATGGTACTTGTGGAAAAGACAAG
AATAAAACACGTTCAAGGGAATGCACCAATCCTCCACCCGAAAATGGTGG
TGGTGCTTGTCTTAAATTGAAAGGCGGATTAGGGCTTAACGAAACTGACT
CTGTTTCTTGTGGTTTACCTTGCTGCCAGCAGGATGCAAAATGGGGTAAC
TGGAGTAACTGGAGTGTGTGTAACAACTCAGTGCCCTGTACAGACGGGTA
TAGAACTCGAAATAGAACATGTCTCCAATCAGAATGTCCAAATGCGAATG
TCGAATGTCCATTATATTTTTCTGTCTTCGCCTTAAATCA Run BLAST on NCBI protein sequence of TCONS_00043373-protein >TCONS_00043373-protein ID=TCONS_00043373-protein|Name=TCONS_00043373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
GNWSIWYNSSCDASCDTGYLTMERFCNDSAPVNNGDKCETEGGERDLYES
KRVTCNTHPCPQSGNWTEWTAWTVCDGTCGKDKNKTRSRECTNPPPENGG
GACLKLKGGLGLNETDSVSCGLPCCQQDAKWGNWSNWSVCNNSVPCTDGY
RTRNRTCLQSECPNANVECPLYFSVFALN Run BLAST on NCBI transcript from alignment at sc0004167:7079..8057+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043373 ID=TCONS_00043373|Name=TCONS_00043373|organism=Clytia hemisphaerica|type=transcript|length=979bp|location=Sequence derived from alignment at sc0004167:7079..8057+ (Clytia hemisphaerica)
TGGAAATTGGTCTATTTGGTATAACAGTTCTTGTGATGCGAGTTGTGATA
CTGGTTATTTGACAATGGAAAGATTCTGCAACGATTCAGCGCCTGTCAAC
AATGGAGACAAATGTGAAACAGAAGGTGGAGAACGTGATCTGTATGAATC
CAAACGGGTTACATGTAATACTCACCCATGTCCTCGTAAGTATCTACCTT
TTTTTCTTTgctattttaattttcaaatattgttgaaatgATACTTGTGG
AATTCCAAAATATTTCGaacaatttcattttagaaAGTGGTAATTGGACT
GAATGGACTGCATGGACTGTGTGTGATGGTACTTGTGGAAAAGACAAGAA
TAAAACACGTTCAAGGGAATGCACCAATCCTCCACCCGAAAATGGTGGTG
GTGCTTGTCTTAAATTGAAAGGCGGATTAGGGCTTAACGAAACTGACTCT
GTTTCTTGTGGTTTACCTTGCTGCCAGCGTAAGTTCTGTAATATATCTTT
TCACAACTTTTGTTACTTTATCTCAATCTATGAAGTCTGTGGAGGTATGA
GATCGATATATATTATACCGATAAAATATTAAATGGATCACGGGACGTTA
AGATCTCGATGAGAAGAAGAATCgttttgttagcttttttagAGAATAGG
GAATATCTGAAGTATGTTAACTCTgagatttttagtttgaaatttCAGTA
CGATATGTTACCATTAATAGTACTGAGCCCTCTCACCAATCTTTTCTTTA
CTTTCATCTTTTAGAGGATGCAAAGTGGGGTAACTGGAGTAACTGGAGTA
ATTGTAACAACACAGTNAGAGGATGCAAAATGGGGTAACTGGAGTAACTG
GAGTGTGTGTAACAACTCAGTGCCCTGTACAGACGGGTATAGAACTCGAA
ATAGAACATGTCTCCAATCAGAATGTCCAAATGCGAATGTCGAATGTCCA
TTATATTTTTCTGTCTTCGCCTTAAATCA Coding sequence (CDS) from alignment at sc0004167:7079..8057+ >TCONS_00043373 ID=TCONS_00043373|Name=TCONS_00043373|organism=Clytia hemisphaerica|type=CDS|length=1611bp|location=Sequence derived from alignment at sc0004167:7079..8057+ (Clytia hemisphaerica)
GGAAATTGGTCTATTTGGTATAACAGTTCTTGTGATGCGAGTTGTGATAC
TGGTTATTTGACAATGGAAAGATTCTGCAACGATTCAGCGCCTGTCAACA
ATGGAGACAAATGTGAAACAGAAGGTGGAGAACGTGATCTGTATGAATCC
AAACGGGTTACATGTAATACTCACCCATGTCCTCaaAGTGGTAATTGGAC
TGAATGGACTGCATGGACTGTGTGTGATGGTACTTGTGGAAAAGACAAGA
ATAAAACACGTTCAAGGGAATGCACCAATCCTCCACCCGAAAATGGTGGT
GGTGCTTGTCTTAAATTGAAAGGCGGATTAGGGCTTAACGAAACTGACTC
TGTTTCTTGTGGTTTACCTTGCTGCCAGCAGGATGCAAAATGGGGTAACT
GGAGTAACTGGAGTGTGTGTAACAACTCAGTGCCCTGTACAGACGGGTAT
AGAACTCGAAATAGAACATGTCTCCAATCAGAATGTCCAAATGCGAATGT
CGAATGTCCATTATATTTTTCTGTCTTCGCCTTAAATGGAAATTGGTCTA
TTTGGTATAACAGTTCTTGTGATGCGAGTTGTGATACTGGTTATTTGACA
ATGGAAAGATTCTGCAACGATTCAGCGCCTGTCAACAATGGAGACAAATG
TGAAACAGAAGGTGGAGAACGTGATCTGTATGAATCCAAACGGGTTACAT
GTAATACTCACCCATGTCCTCaaAGTGGTAATTGGACTGAATGGACTGCA
TGGACTGTGTGTGATGGTACTTGTGGAAAAGACAAGAATAAAACACGTTC
AAGGGAATGCACCAATCCTCCACCCGAAAATGGTGGTGGTGCTTGTCTTA
AATTGAAAGGCGGATTAGGGCTTAACGAAACTGACTCTGTTTCTTGTGGT
TTACCTTGCTGCCAGCAGGATGCAAAATGGGGTAACTGGAGTAACTGGAG
TGTGTGTAACAACTCAGTGCCCTGTACAGACGGGTATAGAACTCGAAATA
GAACATGTCTCCAATCAGAATGTCCAAATGCGAATGTCGAATGTCCATTA
TATTTTTCTGTCTTCGCCTTAAATGGAAATTGGTCTATTTGGTATAACAG
TTCTTGTGATGCGAGTTGTGATACTGGTTATTTGACAATGGAAAGATTCT
GCAACGATTCAGCGCCTGTCAACAATGGAGACAAATGTGAAACAGAAGGT
GGAGAACGTGATCTGTATGAATCCAAACGGGTTACATGTAATACTCACCC
ATGTCCTCaaAGTGGTAATTGGACTGAATGGACTGCATGGACTGTGTGTG
ATGGTACTTGTGGAAAAGACAAGAATAAAACACGTTCAAGGGAATGCACC
AATCCTCCACCCGAAAATGGTGGTGGTGCTTGTCTTAAATTGAAAGGCGG
ATTAGGGCTTAACGAAACTGACTCTGTTTCTTGTGGTTTACCTTGCTGCC
AGCAGGATGCAAAATGGGGTAACTGGAGTAACTGGAGTGTGTGTAACAAC
TCAGTGCCCTGTACAGACGGGTATAGAACTCGAAATAGAACATGTCTCCA
ATCAGAATGTCCAAATGCGAATGTCGAATGTCCATTATATTTTTCTGTCT
TCGCCTTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043373-exon-sc0004167-1491911889:7079..7263 | TCONS_00043373-exon-sc0004167-1491911889:7079..7263 | Clytia hemisphaerica | exon |
| TCONS_00043373-exon-sc0004167-1510915933:7079..7263 | TCONS_00043373-exon-sc0004167-1510915933:7079..7263 | Clytia hemisphaerica | exon |
| TCONS_00043373-exon-sc0004167-1575043694:7079..7263 | TCONS_00043373-exon-sc0004167-1575043694:7079..7263 | Clytia hemisphaerica | exon |
| TCONS_00043373-exon-sc0004167-1491911889:7362..7556 | TCONS_00043373-exon-sc0004167-1491911889:7362..7556 | Clytia hemisphaerica | exon |
| TCONS_00043373-exon-sc0004167-1510915933:7362..7556 | TCONS_00043373-exon-sc0004167-1510915933:7362..7556 | Clytia hemisphaerica | exon |
| TCONS_00043373-exon-sc0004167-1575043694:7362..7556 | TCONS_00043373-exon-sc0004167-1575043694:7362..7556 | Clytia hemisphaerica | exon |
| TCONS_00043373-exon-sc0004167-1491911889:7898..8057 | TCONS_00043373-exon-sc0004167-1491911889:7898..8057 | Clytia hemisphaerica | exon |
| TCONS_00043373-exon-sc0004167-1510915933:7898..8057 | TCONS_00043373-exon-sc0004167-1510915933:7898..8057 | Clytia hemisphaerica | exon |
| TCONS_00043373-exon-sc0004167-1575043694:7898..8057 | TCONS_00043373-exon-sc0004167-1575043694:7898..8057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004167 | supercontig | sc0004167:7079..8057 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000884 | TSP1_rpt |
Blast
The following BLAST results are available for this feature:
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