TCONS_00043373-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043373-protein
Unique NameTCONS_00043373-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043373-protein ID=TCONS_00043373-protein|Name=TCONS_00043373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
GNWSIWYNSSCDASCDTGYLTMERFCNDSAPVNNGDKCETEGGERDLYES
KRVTCNTHPCPQSGNWTEWTAWTVCDGTCGKDKNKTRSRECTNPPPENGG
GACLKLKGGLGLNETDSVSCGLPCCQQDAKWGNWSNWSVCNNSVPCTDGY
RTRNRTCLQSECPNANVECPLYFSVFALN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027078XLOC_027078Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043373TCONS_00043373Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 66..126
e-value: 2.7E-7
score: 40.2
coord: 131..170
e-value: 0.097
score: 18.3
coord: 3..61
e-value: 0.071
score: 19.5
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 1..60
e-value: 4.7E-7
score: 29.5
coord: 127..172
e-value: 2.0E-7
score: 30.7
coord: 62..125
e-value: 3.4E-9
score: 36.4
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 132..169
e-value: 1.8E-4
score: 21.6
coord: 68..103
e-value: 6.3E-5
score: 23.0
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 63..163
score: 10.229
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 124..170
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 3..60
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 64..104

Blast
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BLAST of TCONS_00043373-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.621e-22
Identity = 59/158 (37.34%), Postives = 75/158 (47.47%), Query Frame = 0 
Query:    1 GNWSIWYN-SSCDASCDTGYLTMERFCNDSAPVNNGDKCETEGGERDLYESKRVTCNTHPCPQSGNWTEWTAWTVCDGTCGKDKNKTRSRECTNPPPENGGGACLKLKGGLGLNETDSVSCGLPCCQQDAKWGNWSNWSVCNNSVPCTDGYRTRNRTC 157
            G W+ W + S+C  SC  G     R C+D  P   G KCE    + D        CN+ PCP  GNW+ W+ W  C  TC   + + R R C NPPP NGG AC       G  ++    C    C  D  WG+W +WS C+ S  C  G +TR R C
Sbjct: 4701 GKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDF-------CNSDPCPTHGNWSPWSGWGTCSRTCNGGQMR-RYRTCDNPPPSNGGRAC-------GGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSAS--CGGGEKTRKRLC 4841

HSP 2 Score: 84.3445 bits (207), Expect = 2.710e-19
Identity = 58/155 (37.42%), Postives = 69/155 (44.52%), Query Frame = 0 
Query:    3 WSIWYNSSCDASCDTGYLTMERFCNDSAPVNNGDKCETEGGERDLYESKRVTCNTHPCPQSGNWTEWTAWTVCDGTCGKDKNKTRSRECTNPPPENGGGACLKLKGGLGLNETDSVSCGLPCCQQDAKWGNWSNWSVCNNSVPCTDGYRTRNRTC 157
            WS+W    C  SC  G  T  R CN+ +  + G  CE    E        + CN  PCP  G W+ W  W  C  +CGK   +TR+R C NPPP  GG  C    G     ET    C    C    KW  W++WS C  SV C  G R R R C
Sbjct: 4592 WSLW--EECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEI-------IMCNIRPCPVHGAWSAWQPWGTCSESCGKG-TQTRARLCNNPPPAFGGSYC---DGA----ETQMQVCNERNCPIHGKWATWASWSAC--SVSCGGGARQRTRGC 4727

HSP 3 Score: 81.6481 bits (200), Expect = 2.312e-18
Identity = 51/156 (32.69%), Postives = 72/156 (46.15%), Query Frame = 0 
Query:    2 NWSIWYNSSCDASCDTGYLTMERFCNDSAPVNNGDKCETEGGERDLYESKRVTCNTHPCPQSGNWTEWTAWTVCDGTCGKDKNKTRSRECTNPPPENGGGACLKLKGGLGLNETDSVSCGLPCCQQDAKWGNWSNWSVCNNSVPCTDGYRTRNRTC 157
             WS W   +C  +C  G     R CN   P N G  C+  G + ++       C   PCP  G+W+EW+ W  C  +CG+  N+TR+R C NP  ++GG  C   +G    N  + + C +  C     W  W  W  C+ S  C  G +TR R C
Sbjct: 4534 QWSAW--RACSVTCGKGIQKRSRLCNQPLPANGGKPCQ--GSDLEMRN-----CQNKPCPVDGSWSEWSLWEECTRSCGRG-NQTRTRTCNNPSVQHGGRPC---EG----NAVEIIMCNIRPCPVHGAWSAWQPWGTCSES--CGKGTQTRARLC 4670
The following BLAST results are available for this feature:
BLAST of TCONS_00043373-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.621e-2237.34Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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