|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043334 ID=TCONS_00043334|Name=TCONS_00043334|organism=Clytia hemisphaerica|type=transcript|length=405bp
ATTTAGGCTATATACTCGCATTtatcctagtttgcaatagttCTTGACTG
GGTAAGGCAAACGAAAGCTCGATAAGTCAGacaataaattcaaataaaaa
agccCAAAATTTTCCTGCCCACGTGAAAATGCTCATCACGTTCCGCTCAT
CACAGACAGGAAGACAGTAGACAAGCCTGCAAAATCAGTAACCCATCAGT
TTGCTGATGTTGGCTTTCTTTGATCGTTTTAACTGGACTGGTGATGGTAC
TATATGGCCATAATTGATAATATATGGATAATTTAGTATAGTTTTAATAG
TGCAGTTTTGGAATTTAATGTGGATATGGCTAATCTCAACTTTGCTCAAG
GGCCACGGCTTCACTTTGAGAGTGGTAGTTTTGCGTCAATTAGGAGAAAT
TTTTG Run BLAST on NCBI transcript from alignment at sc0004127:7055..8281+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043334 ID=TCONS_00043334|Name=TCONS_00043334|organism=Clytia hemisphaerica|type=transcript|length=1227bp|location=Sequence derived from alignment at sc0004127:7055..8281+ (Clytia hemisphaerica)
ATTTAGGCTATATACTCGCATTtatcctagtttgcaatagttCTTGACTG
GGTAAGGCAAACGAAAGCTCGATAAGTCAGacaataaattcaaataaaaa
agccCAAAATTTTCCTGCCCACGTGAAAATGCTCATCACGTTCCGCTCAT
CACAGACAGGAAGACAGTAGACAAGCCTGCAAAATCAGTAACCCATCAGT
AAGTATGCTTTCTTCTATTGTAAATGGCATAGTTCAGAATTTTGATATAA
AGTAAAACttataaaaatatgaaagaaaacaTTTCTCTGAAAGGTCAAGA
GTTCACCAAAAGTTTGGCCAAATGCGTCTtagaagaaaaatgtttttagc
tTTAGATCTGTCATTAAAATGAATTAATGTTATTTTTGGAATATTAGCTA
AGATATTCCCCCATCATTAAGTCCCACTAGACGTAATTCCATTCTGGTAA
TTCGTGCATGGATCAGTTCAATTACTGAAAGATCTAAAGAAATGAAATCT
CAATTGATATAATTGAATTATTGAATTAATCAATCAAAGTCTCAAATGTG
ATTGTTAGGTTACTGTAAGCTGGACACCTGAACTTAATTGGGCAACGAAG
CTTAATTAAAAATATAGCTCGATTGGTTAGATTAATTCCACCCGGTATGT
AGATTTCTGCTGTGATTTCTTCTTTTAACAGCTAACACTCCTCCAAAAGT
TTTCACTTACATATACTTATGAAATAACTTCAAAGATTTGATTAATCCAG
ACGtctgcgctcgataggatcgatcatcggaacggatcgatatgtgatcg
atatgtgatcgatggattacttaacgatccgaaTAGGAGATCGATAGTAA
AAAGTAATCCCATTGATCACGTATcaatccgtcatcgagccgttccgatg
atcaatCCTATCGAGTGCAGCCGTCTGGATTAATCTATGTTATTATTTNg
agccgttccgatgatcaatCCTATCGAGTGCAGCCGTCTGGATTAATCta
tgttattattttcttaATAGGTTTGCTGATGTTGGCTTTCTTTGATCGTT
TTAACTGGACTGGTGATGGTACTATATGGCCATAATTGATAATATATGGA
TAATTTAGTATAGTTTTAATAGTGCAGTTTTGGAATTTAATGTGGATATG
GCTAATCTCAACTTTGCTCAAGGGCCACGGCTTCACTTTGAGAGTGGTAG
TTTTGCGTCAATTAGGAGAAATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043334-exon-sc0004127-1491911889:7055..7252 | TCONS_00043334-exon-sc0004127-1491911889:7055..7252 | Clytia hemisphaerica | exon |
| TCONS_00043334-exon-sc0004127-1510915933:7055..7252 | TCONS_00043334-exon-sc0004127-1510915933:7055..7252 | Clytia hemisphaerica | exon |
| TCONS_00043334-exon-sc0004127-1575043694:7055..7252 | TCONS_00043334-exon-sc0004127-1575043694:7055..7252 | Clytia hemisphaerica | exon |
| TCONS_00043334-exon-sc0004127-1491911889:8075..8281 | TCONS_00043334-exon-sc0004127-1491911889:8075..8281 | Clytia hemisphaerica | exon |
| TCONS_00043334-exon-sc0004127-1510915933:8075..8281 | TCONS_00043334-exon-sc0004127-1510915933:8075..8281 | Clytia hemisphaerica | exon |
| TCONS_00043334-exon-sc0004127-1575043694:8075..8281 | TCONS_00043334-exon-sc0004127-1575043694:8075..8281 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004127 | supercontig | sc0004127:7055..8281 + |
Blast
The following BLAST results are available for this feature:
|
