TCONS_00043324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043324
Unique NameTCONS_00043324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043324 ID=TCONS_00043324|Name=TCONS_00043324|organism=Clytia hemisphaerica|type=transcript|length=656bp
CCTGGTGATACCGAAATCAGAAAAACCTTCATTTCAATGATTAGACAGGA
CAAATCAACCTGGTTACCTTACACAGATTACTCAAACTTTAACAAGATTG
TACGTTACATGGCTTGGGTTCTTCGTTACACCCGTAACCTTCGAGCAGAA
GCTAAAAGGAAACGTGAGAATTCCAAGAAGAAACGAGACAAAGGAAAACC
TTACCTAACACCAGAAGAAATCAAAGCTGCAACAATTATCGTCATCAAGG
ATGTTCAGCTATCAGAATTTGATGAAGAAATCGATGACCTTACAAAGAAA
CAGGAAGTTGAAAAAGAGAGCAAACTCTATCAATTCAAACCATTCCTAGA
CAAAAATGGTATCTTGAGAATCGGTGGTAGACTCAAGAATGCCCCTGTCT
CATTTGAAGCAAAACATCAAATTGTTATCCCTAAAGGACATGTTGCATCA
CTCATTGCTGAGAAATATCACAAAGAGAATGGTCACAGTGGTGTAAATCA
AACCTTATCCGAAGTTAGACAGAAATATTGGATATTATGTGGAAGACAAG
TAATCAAAACAGTCATCAAAGCGTGCGTGGAAtgtcaaatatttaaaaac
aaacctgAGATTCCAATGATGGCTGACTTACCTAACAGCAGAATGCAACT
CAACCA
Run BLAST on NCBI

protein sequence of TCONS_00043324-protein

>TCONS_00043324-protein ID=TCONS_00043324-protein|Name=TCONS_00043324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
PGDTEIRKTFISMIRQDKSTWLPYTDYSNFNKIVRYMAWVLRYTRNLRAE
AKRKRENSKKKRDKGKPYLTPEEIKAATIIVIKDVQLSEFDEEIDDLTKK
QEVEKESKLYQFKPFLDKNGILRIGGRLKNAPVSFEAKHQIVIPKGHVAS
LIAEKYHKENGHSGVNQTLSEVRQKYWILCGRQVIKTVIKACVECQIFKN
KPEIPMMADLPNSRMQLN
Run BLAST on NCBI

transcript from alignment at sc0004123:11844..12499

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043324 ID=TCONS_00043324|Name=TCONS_00043324|organism=Clytia hemisphaerica|type=transcript|length=656bp|location=Sequence derived from alignment at sc0004123:11844..12499 (Clytia hemisphaerica)
TGGTTGAGTTGCATTCTGCTGTTAGGTAAGTCAGCCATCATTGGAATCTc
aggtttgtttttaaatatttgacaTTCCACGCACGCTTTGATGACTGTTT
TGATTACTTGTCTTCCACATAATATCCAATATTTCTGTCTAACTTCGGAT
AAGGTTTGATTTACACCACTGTGACCATTCTCTTTGTGATATTTCTCAGC
AATGAGTGATGCAACATGTCCTTTAGGGATAACAATTTGATGTTTTGCTT
CAAATGAGACAGGGGCATTCTTGAGTCTACCACCGATTCTCAAGATACCA
TTTTTGTCTAGGAATGGTTTGAATTGATAGAGTTTGCTCTCTTTTTCAAC
TTCCTGTTTCTTTGTAAGGTCATCGATTTCTTCATCAAATTCTGATAGCT
GAACATCCTTGATGACGATAATTGTTGCAGCTTTGATTTCTTCTGGTGTT
AGGTAAGGTTTTCCTTTGTCTCGTTTCTTCTTGGAATTCTCACGTTTCCT
TTTAGCTTCTGCTCGAAGGTTACGGGTGTAACGAAGAACCCAAGCCATGT
AACGTACAATCTTGTTAAAGTTTGAGTAATCTGTGTAAGGTAACCAGGTT
GATTTGTCCTGTCTAATCATTGAAATGAAGGTTTTTCTGATTTCGGTATC
ACCAGG

Coding sequence (CDS) from alignment at sc0004123:11844..12499

>TCONS_00043324 ID=TCONS_00043324|Name=TCONS_00043324|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0004123:11844..12499 (Clytia hemisphaerica)
GTTGAGTTGCATTCTGCTGTTAGGTAAGTCAGCCATCATTGGAATCTcag
gtttgtttttaaatatttgacaTTCCACGCACGCTTTGATGACTGTTTTG
ATTACTTGTCTTCCACATAATATCCAATATTTCTGTCTAACTTCGGATAA
GGTTTGATTTACACCACTGTGACCATTCTCTTTGTGATATTTCTCAGCAA
TGAGTGATGCAACATGTCCTTTAGGGATAACAATTTGATGTTTTGCTTCA
AATGAGACAGGGGCATTCTTGAGTCTACCACCGATTCTCAAGATACCATT
TTTGTCTAGGAATGGTTTGAATTGATAGAGTTTGCTCTCTTTTTCAACTT
CCTGTTTCTTTGTAAGGTCATCGATTTCTTCATCAAATTCTGATAGCTGA
ACATCCTTGATGACGATAATTGTTGCAGCTTTGATTTCTTCTGGTGTTAG
GTAAGGTTTTCCTTTGTCTCGTTTCTTCTTGGAATTCTCACGTTTCCTTT
TAGCTTCTGCTCGAAGGTTACGGGTGTAACGAAGAACCCAAGCCATGTAA
CGTACAATCTTGTTAAAGTTTGAGTAATCTGTGTAAGGTAACCAGGTTGA
TTTGTCCTGTCTAATCATTGAAATGAAGGTTTTTCTGATTTCGGTATCAC
CAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027032XLOC_027032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043324-exon-sc0004123-1491911889:11844..12499TCONS_00043324-exon-sc0004123-1491911889:11844..12499Clytia hemisphaericaexon
TCONS_00043324-exon-sc0004123-1510915933:11844..12499TCONS_00043324-exon-sc0004123-1510915933:11844..12499Clytia hemisphaericaexon
TCONS_00043324-exon-sc0004123-1575043694:11844..12499TCONS_00043324-exon-sc0004123-1575043694:11844..12499Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043324-proteinTCONS_00043324-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004123supercontigsc0004123:11844..12499 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.2138	0.49153	0.348101	0	0.140173	0	0.12173	0.387817	0	0.486181	0.213224	0.685906	0.329794	0.164452	0.113647	0	0	0.305346	0.253112	0	0.613904	0.729817	1.7386	0.896306	0.622755	0.246659	0.43532	0.598642	1.4918	0.782577
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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