TCONS_00043303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043303
Unique NameTCONS_00043303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043303 ID=TCONS_00043303|Name=TCONS_00043303|organism=Clytia hemisphaerica|type=transcript|length=513bp
CAGGACTTTAGCGGCTTCTCTTTCAACGAAGAAACAGGTTTATTAGAGAA
GGAGGTACCTAATAGAAAGAAAACATGGCTTGATGTTGCCAAATACTTAA
TCAATTGTGGTATCAATATCAAATCTGCTGACTCAACGTCTTCCTTACCC
ATTCATTACGCTGTTGAAAACAATTTCCCGTCAGCTGCTCTCCTGGTCAA
CCTAGCACCCAGTCTGCTCAATGTTCAAGATGGACGAACGCCCATCGTTC
GGGCGTTATTAAATGGAAATGTAAAAAGTTCTTATCCTATCTCTCGGTAT
GCTCTTTTTTACTCTAGACGAGGAAAACTTCCTTGATTACTTTGCTGTAT
CTCATATTCTTGCAAATTGctaattttgaacttttcaagGCATTTTTAAT
CTGCTGTCGTTAACGTTCCatcacagaaaaaaaaattgatatcttTTGGC
TATGCATTCAGAAGTTTTGAGACCTCTCTTGGTTTTGGAACATCCATagc
taaaagaaaacaa
Run BLAST on NCBI

protein sequence of TCONS_00043303-protein

>TCONS_00043303-protein ID=TCONS_00043303-protein|Name=TCONS_00043303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
QDFSGFSFNEETGLLEKEVPNRKKTWLDVAKYLINCGINIKSADSTSSLP
IHYAVENNFPSAALLVNLAPSLLNVQDGRTPIVRALLNGNVKSSYPISRY
ALFYSRRGKLP
Run BLAST on NCBI

transcript from alignment at sc0004110:505..1340-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043303 ID=TCONS_00043303|Name=TCONS_00043303|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at sc0004110:505..1340- (Clytia hemisphaerica)
CAGGACTTTAGCGGCTTCTCTTTCAACGAAGAAACAGGTTTATTAGAGAA
GGAGGTACCTAATAGAAAGAAAACATGGCTTGATGTATGTATATTATCAA
AAAATCGTCATTAAGTCTTTATTTTAGTCGCCAAAGCAAAAAATTTAATG
GGGAAGGTTTTGGAGTGCAATTTTTAAACATTGAATGCCGAGTGGGGATG
AAATCAAAGTCAATTTCCCAGTGGGGTTGAATTTCCAGGGTATTTTCTCA
CCGGGGACGAAATCTTTGCCAAATATTCCAGTGGGGGCTTGAATCTCAGC
AGGTCTGTGACCCGGGTGTTTTGGGGGTTGTATGTCTACTGAGACAGATG
TAGTTTTACGCTTATTGAGAATTTAAAAAAAATAAATGATATGAATTTTA
TAAACAGGTTGCCAAATACTTAATCAATTGTGGTATCAATATCAAATCTG
CTGACTCAACGTCTTCCTTACCCATTCATTACGCTGTTGAAAACAATTTC
CCGTCAGCTGCTCTCCTGGTCAACCTAGCACCCAGTCTGCTCAATGTTCA
AGATGGACGAACGCCCATCGTTCGGGCGTTATTAAATGGAAATGTAAAAA
GTTCTTATCCTATCTCTCGGTATGCTCTTTTTTACTCTAGACGAGGAAAA
CTTCCTTGATTACTTTGCTGTATCTCATATTCTTGCAAATTGCTAATTTT
GAACTTTTCAAGGCATTTTTAATCTGCTGTCGTTAACGTTCCATCACAGA
AAAAAAAATTGATATCTTTTGGCTATGCATTCAGAAGTTTTGAGACCTCT
CTTGGTTTTGGAACATCCATAGCTAAAAGAAAACAA

Coding sequence (CDS) from alignment at sc0004110:505..1340-

>TCONS_00043303 ID=TCONS_00043303|Name=TCONS_00043303|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0004110:505..1340- (Clytia hemisphaerica)
GTTGCCAAATACTTAATCAATTGTGGTATCAATATCAAATCTGCTGACTC
AACGTCTTCCTTACCCATTCATTACGCTGTTGAAAACAATTTCCCGTCAG
CTGCTCTCCTGGTCAACCTAGCACCCAGTCTGCTCAATGTTCAAGATGGA
CGAACGCCCATCGTTCGGGCGTTATTAAATGGAAATGTAAAAAGTTCTTA
TCCTATCTCTCGGTATGCTCTTTTTTACTCTAGACGAGGAAAACTTCCTT
GACAGGACTTTAGCGGCTTCTCTTTCAACGAAGAAACAGGTTTATTAGAG
AAGGAGGTACCTAATAGAAAGAAAACATGGCTTGATGTTGCCAAATACTT
AATCAATTGTGGTATCAATATCAAATCTGCTGACTCAACGTCTTCCTTAC
CCATTCATTACGCTGTTGAAAACAATTTCCCGTCAGCTGCTCTCCTGGTC
AACCTAGCACCCAGTCTGCTCAATGTTCAAGATGGACGAACGCCCATCGT
TCGGGCGTTATTAAATGGAAATGTAAAAAGTTCTTATCCTATCTCTCGGT
ATGCTCTTTTTTACTCTAGACGAGGAAAACTTCCTTGACAGGACTTTAGC
GGCTTCTCTTTCAACGAAGAAACAGGTTTATTAGAGAAGGAGGTACCTAA
TAGAAAGAAAACATGGCTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027011XLOC_027011Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043303-proteinTCONS_00043303-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043303-exon-sc0004110-1575043694:1257..1340TCONS_00043303-exon-sc0004110-1575043694:1257..1340Clytia hemisphaericaexon
TCONS_00043303-exon-sc0004110-1575043694:505..933TCONS_00043303-exon-sc0004110-1575043694:505..933Clytia hemisphaericaexon
TCONS_00043303-exon-sc0004110-1510915933:1257..1340TCONS_00043303-exon-sc0004110-1510915933:1257..1340Clytia hemisphaericaexon
TCONS_00043303-exon-sc0004110-1510915933:505..933TCONS_00043303-exon-sc0004110-1510915933:505..933Clytia hemisphaericaexon
TCONS_00043303-exon-sc0004110-1491911889:1257..1340TCONS_00043303-exon-sc0004110-1491911889:1257..1340Clytia hemisphaericaexon
TCONS_00043303-exon-sc0004110-1491911889:505..933TCONS_00043303-exon-sc0004110-1491911889:505..933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004110supercontigsc0004110:505..1340 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.556195	0.124827	1.26164	2.55121	0.319384	0	0.308353	0.425176	1.27846	2.00996	1.30954	1.37978	2.04718	2.48119	0.818656	1.17841	1.22652	1.05018	0.635742	0.797756	0.931488	0.593579	0.14681	0.798173	0.12709	0	0.364645	1.38154	0.850183	0.825152
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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