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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043286 ID=TCONS_00043286|Name=TCONS_00043286|organism=Clytia hemisphaerica|type=transcript|length=1750bp
CCTTATAGAAGAATAATTAGGTTTATTTTCTGACCTTTGTAAAATCTCTT
GTATATAAAGAGCAATATCTAGTTCGATTGTCAAACTAATAATGTTGCCT
GGTTTAAGTTTCCTTTTtaggatttatttttaaaatgagcaAACGTAATA
ATAACAAAGCTGTATTCAAGAACTACCAAAAAGACATGTCTGCTAAAGAC
AAAGGAATCATATTGTTGAAAGTGATGTTCCAAGTGAATTGACAGTTCAG
AACTGTGATCCTATTGCAAcaggcaaaaaaagaaaagtttttgaacCTTT
AGATGCGAGGGTTTATGTATCATTTGCTGAATACGATGAACTGagcataa
aaaacatcaaatctgCATGCGAAAAGCATTTTAATAAGCCGCCGGGTACT
TGTGACGTTCTTGTTGATACTGAAGGGCCATCTGCCCAAAGGTATgatca
aatcaagaaaaaggaCAATATATTAATCCGCTTTTTAAGCAATGGAAAAT
CTTCTTCAGATTCGGTAACACCACAGAGAGTTCAAGCCCCACCTCCCAAA
GTTAAGCACGAAATGGCACAACCTGGAGACAACTCTATTCCTCATTCTGA
GTTTGCTAAATCAATTTGTATTAGCGATTTGATGAAAGCAGGAAAGctac
aaaaacttgaaaagcCAAGCAAATTGGAACTGCAAGAATTTGATTTAGAA
ATTGGAAATTGGAAATTGTACAAAGACATTGAGTTGTATGTCGACAAAGA
ACCGTTTGCTTATGGTGGTTTCAGAGCTGCTCACAAAGCCCAAGAACGTC
TTACAAAGAAGACCTATGTTGTTAAAAAGTATTTGAAAACTGCTGCCAAA
AAGATGGAAACACTAGACATTGAGATAACCAATCACGCGAAAAAACAGTG
CCAAATGCACACCGTGGCACGTAATATAACACAGAGATTTGAAAAATCAG
TCCCAGAGGAGTTTGGGGATACCTTTTCTTTCGGaaaagtctactttgct
ctCATGGGTGACACTGAGCCTGTCACAGTCGAAGAGTATATTGAAGGTCA
ATTTACCAAATATGTCAACAACAATGGCTACTGTTTTAAAATTCCAAATG
AATCCCACTTGAAACCCATTTATGAAAAAGCACAGGCTCTTATTCATTGG
TCTTATGAACTATCTAAAGGAAAAATGATGTTAACAGATATCCAAGGTGC
AGGGTATCAACTTTACGATCCAGAAATCGCAACTGATAAACCCCACGATG
AGCaagaattgctattttgtaCTGGCAACTTATCATTTGCAGCTATTGGT
AGTTTCAAACAAAATCACACTTGTAATTACTGGTGTAAAATTCTAAAACT
GCGTGAGTTCCCTCCACTAGAAACACCCCACAACTCAACTAGTGCAGCAA
TCAAAAGTAATTGATCTGATTGAAAAAAACATGTTGAAATTTGTTCCagt
attgaaattttttaaaagcttAAACTTATTTTCATGAGCAAAAACTTGTG
CAGATAGGTTAATACCTGTACACGCACTGTTTGTAGATTCAGATTCCTGT
TATacttttttgtttgtatttttatcatttttttgtcataCCAGGGGATA
ATTCGCTGTTGCTCAACctttttgatgatgtcatttttgaaatctacaaa
CATTTGGTTGATGAATTTTCTATCAGTACATTTTAGTACCCTGGTCAATG
TTCGAAATCTTtaaccattttgttttgagtaagAGCTGCCCTATAGCTCA Run BLAST on NCBI protein sequence of TCONS_00043286-protein >TCONS_00043286-protein ID=TCONS_00043286-protein|Name=TCONS_00043286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MAQPGDNSIPHSEFAKSICISDLMKAGKLQKLEKPSKLELQEFDLEIGNW
KLYKDIELYVDKEPFAYGGFRAAHKAQERLTKKTYVVKKYLKTAAKKMET
LDIEITNHAKKQCQMHTVARNITQRFEKSVPEEFGDTFSFGKVYFALMGD
TEPVTVEEYIEGQFTKYVNNNGYCFKIPNESHLKPIYEKAQALIHWSYEL
SKGKMMLTDIQGAGYQLYDPEIATDKPHDEQELLFCTGNLSFAAIGSFKQ
NHTCNYWCKILKLREFPPLETPHNSTSAAIKSN Run BLAST on NCBI transcript from alignment at sc0004093:2784..4533 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043286 ID=TCONS_00043286|Name=TCONS_00043286|organism=Clytia hemisphaerica|type=transcript|length=1750bp|location=Sequence derived from alignment at sc0004093:2784..4533 (Clytia hemisphaerica)
TGAGCTATAGGGCAGCTcttactcaaaacaaaatggttaAAGATTTCGAA
CATTGACCAGGGTACTAAAATGTACTGATAGAAAATTCATCAACCAAATG
tttgtagatttcaaaaatgacatcatcaaaaagGTTGAGCAACAGCGAAT
TATCCCCTGGtatgacaaaaaaatgataaaaatacaaacaaaaaagtATA
ACAGGAATCTGAATCTACAAACAGTGCGTGTACAGGTATTAACCTATCTG
CACAAGTTTTTGCTCATGAAAATAAGTTTaagcttttaaaaaatttcaat
actGGAACAAATTTCAACATGTTTTTTTCAATCAGATCAATTACTTTTGA
TTGCTGCACTAGTTGAGTTGTGGGGTGTTTCTAGTGGAGGGAACTCACGC
AGTTTTAGAATTTTACACCAGTAATTACAAGTGTGATTTTGTTTGAAACT
ACCAATAGCTGCAAATGATAAGTTGCCAGtacaaaatagcaattcttGCT
CATCGTGGGGTTTATCAGTTGCGATTTCTGGATCGTAAAGTTGATACCCT
GCACCTTGGATATCTGTTAACATCATTTTTCCTTTAGATAGTTCATAAGA
CCAATGAATAAGAGCCTGTGCTTTTTCATAAATGGGTTTCAAGTGGGATT
CATTTGGAATTTTAAAACAGTAGCCATTGTTGTTGACATATTTGGTAAAT
TGACCTTCAATATACTCTTCGACTGTGACAGGCTCAGTGTCACCCATGag
agcaaagtagacttttCCGAAAGAAAAGGTATCCCCAAACTCCTCTGGGA
CTGATTTTTCAAATCTCTGTGTTATATTACGTGCCACGGTGTGCATTTGG
CACTGTTTTTTCGCGTGATTGGTTATCTCAATGTCTAGTGTTTCCATCTT
TTTGGCAGCAGTTTTCAAATACTTTTTAACAACATAGGTCTTCTTTGTAA
GACGTTCTTGGGCTTTGTGAGCAGCTCTGAAACCACCATAAGCAAACGGT
TCTTTGTCGACATACAACTCAATGTCTTTGTACAATTTCCAATTTCCAAT
TTCTAAATCAAATTCTTGCAGTTCCAATTTGCTTGgcttttcaagttttt
gtagCTTTCCTGCTTTCATCAAATCGCTAATACAAATTGATTTAGCAAAC
TCAGAATGAGGAATAGAGTTGTCTCCAGGTTGTGCCATTTCGTGCTTAAC
TTTGGGAGGTGGGGCTTGAACTCTCTGTGGTGTTACCGAATCTGAAGAAG
ATTTTCCATTGCTTAAAAAGCGGATTAATATATTGtcctttttcttgatt
tgatcATACCTTTGGGCAGATGGCCCTTCAGTATCAACAAGAACGTCACA
AGTACCCGGCGGCTTATTAAAATGCTTTTCGCATGcagatttgatgtttt
ttatgctCAGTTCATCGTATTCAGCAAATGATACATAAACCCTCGCATCT
AAAGgttcaaaaacttttctttttttgcctgTTGCAATAGGATCACAGTT
CTGAACTGTCAATTCACTTGGAACATCACTTTCAACAATATGATTCCTTT
GTCTTTAGCAGACATGTCTTTTTGGTAGTTCTTGAATACAGCTTTGTTAT
TATTACGTTtgctcattttaaaaataaatcctaAAAAGGAAACTTAAACC
AGGCAACATTATTAGTTTGACAATCGAACTAGATATTGCTCTTTATATAC
AAGAGATTTTACAAAGGTCAGAAAATAAACCTAATTATTCTTCTATAAGG
Coding sequence (CDS) from alignment at sc0004093:2784..4533 >TCONS_00043286 ID=TCONS_00043286|Name=TCONS_00043286|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0004093:2784..4533 (Clytia hemisphaerica)
TCAATTACTTTTGATTGCTGCACTAGTTGAGTTGTGGGGTGTTTCTAGTG
GAGGGAACTCACGCAGTTTTAGAATTTTACACCAGTAATTACAAGTGTGA
TTTTGTTTGAAACTACCAATAGCTGCAAATGATAAGTTGCCAGtacaaaa
tagcaattcttGCTCATCGTGGGGTTTATCAGTTGCGATTTCTGGATCGT
AAAGTTGATACCCTGCACCTTGGATATCTGTTAACATCATTTTTCCTTTA
GATAGTTCATAAGACCAATGAATAAGAGCCTGTGCTTTTTCATAAATGGG
TTTCAAGTGGGATTCATTTGGAATTTTAAAACAGTAGCCATTGTTGTTGA
CATATTTGGTAAATTGACCTTCAATATACTCTTCGACTGTGACAGGCTCA
GTGTCACCCATGagagcaaagtagacttttCCGAAAGAAAAGGTATCCCC
AAACTCCTCTGGGACTGATTTTTCAAATCTCTGTGTTATATTACGTGCCA
CGGTGTGCATTTGGCACTGTTTTTTCGCGTGATTGGTTATCTCAATGTCT
AGTGTTTCCATCTTTTTGGCAGCAGTTTTCAAATACTTTTTAACAACATA
GGTCTTCTTTGTAAGACGTTCTTGGGCTTTGTGAGCAGCTCTGAAACCAC
CATAAGCAAACGGTTCTTTGTCGACATACAACTCAATGTCTTTGTACAAT
TTCCAATTTCCAATTTCTAAATCAAATTCTTGCAGTTCCAATTTGCTTGg
cttttcaagtttttgtagCTTTCCTGCTTTCATCAAATCGCTAATACAAA
TTGATTTAGCAAACTCAGAATGAGGAATAGAGTTGTCTCCAGGTTGTGCC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043286-exon-sc0004093-1491911889:2784..4533 | TCONS_00043286-exon-sc0004093-1491911889:2784..4533 | Clytia hemisphaerica | exon |
| TCONS_00043286-exon-sc0004093-1510915933:2784..4533 | TCONS_00043286-exon-sc0004093-1510915933:2784..4533 | Clytia hemisphaerica | exon |
| TCONS_00043286-exon-sc0004093-1575043694:2784..4533 | TCONS_00043286-exon-sc0004093-1575043694:2784..4533 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004093 | supercontig | sc0004093:2784..4533 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006468 |
protein phosphorylation |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004674 |
protein serine/threonine kinase activity |
Blast
The following BLAST results are available for this feature:
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