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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043282 ID=TCONS_00043282|Name=TCONS_00043282|organism=Clytia hemisphaerica|type=transcript|length=1749bp
TCATGCCTTTAAGTTCAAGGCTTaaaagatttgaattttttcgtttaaaa
tgaatttttaccGTCTATAGtTGAGTATGGCTACGTTAAAATGGTATCGC
ACGACAATCACATTCTCAATGTGACAGCAATCAATATATCATACCACAAA
ACTTCCCAAGAATGCATTCGAACTTGTCTCAACTTTACAAATTGTTGGAG
TATTAATTTGAAAGAACAGCCAAATAATGAGATTTACGAGTGTCATATTT
TGGATACTGATCGATTTCGAAAcgcgtcaaattttgtttcttccaCTACA
GGAAATTCTCATTTTTCACTTGATCATGATTGTGAATGGGAGGAGACATG
CATCAACccaaacaaaaaatgtattcCAAACTACTCTAATGGTTCTTATG
AATGTGTGTGCGAGCCTATTGGTAAATACGACATTCATTGCATAAacAAA
AACATTGCATTTCAAAGACCAGTCAGTTTATCGAGACTACAACCGGGTCA
TGGGAAACCTGCGTTTGTTACCGATGGTTATAAAGGAGAAATGTGTAATA
ATTTCTCAACCAATCTTATCCACTCGGAAATAGGAACTATGGAAATCTGG
CTGAGAATTGATTTGGGTGGAatgaaacaaattaaatttgttgatatttt
cgaTCGTACAATAGTAAAACCTTATCATCAACGACTTGCTTCTACAGATA
TTATTGTGTATGGTCAGAATCCTATGGATAACCGCCAGCTTTGCAGTACT
ATAACATTGCAAGATACTGAAAATGATGATAAGGTTTTTAAAGTTTGTAA
CGAGATTTTGACTGGGAGTGGAGTTGAATTGTACAAGGCCCCCGCCGGTA
CTAGGCAAATGATTCATCTTTGTGAAATAGCTGTCTACGGACCTACAAAT
TAAACTTCATTATTTTTACTATATCATACAGGGTGTTTCACAAAAAAGTA
AACTGAAAAAGCAAGGCAgtttttagaaagaaagaaagatcaAGTCATAA
ATGCACAATGGTATGACTTTTCAACACTGGAGACCAATTAAGCTCTCCTT
AGATACGACCACCACCATCACCTTGCTTTACTTTGAAGCACATCTCAATG
CTGAGACTTCGCCCATATTTGAAAAAGATTCCAGGAAAGTAAATTGCTCA
ACGACCAGCTTGCCATCAATGcagatttatttttcatttactgGGGAGAG
GATTATACATTTGTCACCATTGATTTTGAGTCCATTTCTTGCACATGCGG
ATTCCAGTTGGTGGGAAGCAAgttcaagaagaagaaaagtaaCGGTTATG
AGGGTTGTATCGTCTGCATATCTAACATCGCAGCATAATTCATCATCAAG
CGTAATTGTTTCTTGAAGACATTTTAGTTCTTTCATTAAGAAATCGAGAA
AGAGGTTGAATAGGGTAGGGGACAATAAACATCCCTGTCGTACACCAATT
ATAACTTTAAACCACTCAGTAAGCCGACCGTTAACAATAACTGAACAAGT
TGTATTGTCGTACATGGTTTTGACGATGTTGACAATATTGGTCGAGACAC
CAATGCCGCACCAATGGCAAGCAACATCTTCCATAGTGCCTCTCTCCAGA
CAGTGTCGAACGCActtttaaaatcaatgaaattgaaatgtagATTGACA
CCACACTCTTTTGTCTTCTCCGTAATTTGCCTGACGATAAAAATCGCATC
TACTTAGATAAAatcattttaagaaaaatattattctATTTAAAGGGGA Run BLAST on NCBI transcript from alignment at sc0004090:1699..8303+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043282 ID=TCONS_00043282|Name=TCONS_00043282|organism=Clytia hemisphaerica|type=transcript|length=6605bp|location=Sequence derived from alignment at sc0004090:1699..8303+ (Clytia hemisphaerica)
TCATGCCTTTAAGTTCAAGGCTTaaaagatttgaattttttcgtttaaaa
tgaatttttaccGTCTATAGGTATGTATTTCATATTTCAGTTACGGTACA
TACGGAGAGAGCTAATCATAAAAAATCGAGTGGTGGATATTTCAGATATT
TGTTGTAGTCGCATTATAAGCCAGCTTTTCtttagtccgtataaaaaacc
ccaaTCTGGaacacagatctgtaaagcccgaagggctagatcgaaaagtg
aagcaagttttggtaggatttccttccaaagaaatcacgtgacaacaagc
aatttcactggtttgagagatgcaaTATAGCGTTTGCCGCTTACTTTTTT
TATCttgcgctccgaaaacaattaaaatacaAGATcgtatccatcggcac
gaaatttaaaaagtcaaatctttgcttcaatttttttttgctagagaaag
cttaaagttatCCTTAGCCTTTCACAAATCTGGGGTCtgaaagccttttg
tttctttccattgtatCTAACTTAAAATTGCGTTGAATTAAAATTCAACT
CGAACAGTTATTGATCTTCTTTGCATTGGTCAAATtatcaatgtaaacaa
aacatATAGTGTTCGATGTTAACCAATGGAGAGAAACAAAGGGGTCCCAG
acaatgttttttttacatggactacacgtttttttatgtaagaaaaaact
atataaaaacataaggcttcgatgatcaaaaatcaagaacaagttaagaa
cattttaaggctttacagatTCCAAAACACCCCATTTTTTAAGGAAATGC
gggacaaaaatattcacaaaatggtaaaataagaatatgttaagaatatt
tttttagacttacaactcaaaaatttaagaacatgcaaaggcttcaaaaa
atttagatgttcttataaaaaacgtgtatggttttcaaaattatttactA
ACGCACCTAGAGACAACACAAATGTATAAGACTAGATAAAAATTAAGTTA
GATAAACGAAGTATTTCACCTTTGTTGTTGACAGTGGTTACATCCACCCT
TCGTAAAATTTGTGTTTCGCCATATTGAATTACATTGATGAAGAAATATA
GGGTCAAAATGTTATTCATTACGCCACCATTAATCATTTTTGTGTTTGTT
CTATGTATGTGTATGTTCGATACATCTAAATGtcgcgaaaaaaaatatat
atagatttcgtacgaaaataaattttattttctttgagaatTTTTTATAT
AATGACACAATATAAAGTTATAAGATATATAAATATTATTGTACCAATCA
CTAAGCTTCGTTCAATAAAATCTCCTTGGATTTACTTTGACAACAAATCA
ATAATTTAAGGAATTTTTTTGTCAGGATTTATAATATAAATATCTTTGTT
ATATCACCGGGATTTCGGAATTTTACCGAAAATTTAACGGTATTTCGCGA
TTAAGACCCTGggatttttttattgaatttatagGGGTTACTTTTCTTGG
TCGTATGTGTATCGATGTATCAGAAAACGTTGCGACTCTTCTTATTCGTT
TCTCTGAATATGttgaaatattaagaaaagctaTACAGAATCATATCAAT
TGATTCCATATAATCTATCTGAATATCGAAAATATATAACATTTCTataa
attaaatatttcatTATAAATAGTgacaaaaaaagtttctataaATTATT
GATGTGTTGGGAAGGTAAATCTAAGGAGATTTTATTAAATGAGGCTCAGT
GATTGGTCAAATAATTTTAACTCCTATCCCAAAATACTTATTGATTTTGA
GTCGCTATGTCATTATATTCAGtctttaagaaaaaataatcaGAGAAAAT
TACATTCATCTGACTGAAGTCGATTTTTTCGCGACATTTAGATGCATTGA
ACAGGTTTTCACATAGAACATACACAAAAATGATTAATGGTGGAGTAATG
AATAACATTTTGGTCTTATATTTCTTCATCAATGTAATTCAATATGGCGA
AACACAAATTTTACGAAGGGTAGATGTAAGCACTGTCAACAACAAAGGTG
AAATACTTCGTTTATCTAACTCAATATTTATCTAGTCTTATACATttaca
cctccttctcacagaccggTTAGTAATTTTTCAGCCaacggggataaaaa
taacgtaGTGAAACTCATTGCGGATTGATATTCACatagtttttatggct
ggggatttcaattcttttgttttcaaaccataaaattcagtggggatggg
aaaaatggtaaatatttcgcagtgaggattggtttgtttgattattttca
tttgggacaaaaattggaggataatatTTCAccggggatgatattttggc
caatttttctagtgggaagGGGTGTACATTCATGCTGTCTCCAGGTGCGT
TAGTTGAGAAGTTTGAAGAACTATAGTCCTTATAAACACAAACCCAttag
gatttttcagccagtgggggtgaAATTAACGGATTCAAACGCAATTGAGA
TTGATGCTCCTATGTTTTTTATAGCGGGAGGTTTGAATTCTATTGTCATT
GTCTTCAAGGCAAAAAATTAAGTGGACACAATACTTTGTAGTGAGggttt
gtttatttgattattacaAGTGGCAACGAAAAATGGGGTATAAGCTTCCA
CTTTCCAGTCAgagggggtcccaccgggtctgtgagaaacaGGTGTATCT
TATCATTTGCTTGCTTATaaaatagtttgttttgctcactttgatCATGT
GACCAATCCAAAgaggattttttattttaaaaactgttcaaatcaatctt
ttaactatttttttacacaaagaaaaagtcaacaaaatatAATAAGAATC
GGCTTGCAGACCATAGGGTTCTTCATACAGACTATAGAAAAACTTACTTA
CAAAGACCTAAAAgagcattttttcaatttctcgcgaaaaactgaaaact
ggttTCTACAAAACATTACTGCTAGGGAAGAAAACCATAGATagcgtact
ttcaacacaaaaagtttcagccgaAAACTCTACCTAACTTTTTTTAAGAT
AGATGGTATATTTTCTTGTAGGTTTAAAAGGGTATCCCTGGTAATagtgt
tattatttttcagtTGAGTATGGCTACGTTAAAATGGTATCGCACGACAA
TCACATTCTCAATGTGACAGCAATCAATATATCATACCACAAAACTTCCC
AAGAATGCATTCGAACTTGTCTCAACTTTACAAATTGTTGGAGTATTAAT
TTGAAAGAACAGCCAAATAATGAGATTTACGAGTGTCATATTTTGGATAC
TGATCGATTTCGAAAcgcgtcaaattttgtttcttccaCTACAGGAAATT
CTCATTTTTCACTTGATGTGAGTAAATAATAAATTATCAAACTCGTCCCC
TGTCTTTTATATGACTCATAGAGTCTTTTTGATTGTCTTAACCTCCATCa
gttcagtaaaatcaaaaagtaaaagaattttATAATTTGTGACAGGGGAT
GACTCAAAGTAAATCACCTTTTATAGAAGAACCGAAATTCCACGGGGGTA
ATTTAACAAAGATTTTTATCGAATTGTTTTGGAAGTTTTGACTACTTTAT
GCAAATATGACGACATTTCCTCACTTGATGGGAACAGACTTCTGTCATTT
TCTTTGTGAAAACTCTCCTTGTCATTTTTTATAGCATGATTGTGAATGGG
AGGAGACATGCATCAACccaaacaaaaaatgtattcCAAACTACTCTAAT
GGTTCTTATGAATGTGTGTGCGAGCCTATTGGTAAATACGACATTCATTG
CATAAGTAAGTATTTTCAAtgagaaaaaatgatttaaGGGTATAAGATTc
cgaaaatgaatttttttgacaatttcagGATGAATATTATATGAAAAGTA
GCACTCTCCCATTTAGGTTTTACGGGATTCGCTAGTTTTGTGTGCTTTGA
CTCTAGATCTTGTACCAGTTGTCATGAATACTTTGCTCTTCGATAAATTA
AACCTTCCTCAGGAATAATCGTACGATATGATATTCACGGCACAGCTCAG
GCGGACGCGGGGAGATGGGAAGACTTCAGCCTCACCACTTttaagcaaat
gagattttttcttcaagttttatcttattttgagccttcagcctgcCCAT
TTTCACGgttgttccaccgggcctgtgGTATGGGATAACATATCCATAAC
AAATGGTAAAAGATCTTACCAAGGACACCACAATCCTCTGAAATTAACCT
GTGGAGACAAACCGTAAAACTGTCATCATAATTGTCTCAATCACattaat
ataaaaaagaatcgaaggtgAAGAGGAAATTTCATCATTTAAAGCCCAAA
TAGATtataaaattttcgattttcagtTAAATGGATTTCTAATTACATAA
GAATATGTATATTATGTTCTGAGGTTACTTGATCTTCACTGAATCTTTCC
TATGTGTGTTatttgtgatttgattggtacgATTTTTATCCAAGATCTTC
AATGATTGCTATGGTGGGGATTCTCTTTTGGAAAGAGAAAGCAAGAAGCT
CTTGCGGCAGAGTTTCTCTAAAATATTTCCCGCGTTTCATATGTAATGGT
TATGAGCACAGGATTATGATATATTGTATATTCAACAGTATTAATAAATG
ATTGTTCATCATTCGTTCTATTAAATGTATCAAGTGTTCTGAGGGATAAA
CTAAGGAACCATCCACTTAGCTATATGTTATAAACCTTAGTCATTAGCTA
TTGGTGGATTAAGATATCAATGGTGCATACCTTATACCGCAGAACATTGG
AGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGGAGGCCAGAAT
GAGATGGTCATTACGAATCGTTTAATAATTTATAGATCTTACCAATAATG
AATGAACTATCTGTTTAATTTGGTCTGATTCATTTTTGATGTTGCTAGTT
TGGCTGTAAAACACGGTTTTATTGAAGGGTTTCAAGGAAATAGAGACAGA
ACAGGTTTCAAATTTCCCAGTTCGCCTTCCAGCCCcttccccgtgtatcc
caggctttatttacgtttcTGATGATGGCAGAGCATACGGATATTATCTG
ACGCTATCAGTAAACATTAAGCCGATAATTATGCTATCAGTAAACATTAA
GCCGATAATTATGCAGTTTGTTAACGATCACCaatataaatttcttttca
gacAAAAACATTGCATTTCAAAGACCAGTCAGTTTATCGAGACTACAACC
GGGTCATGGGAAACCTGCGTTTGTTACCGATGGTTATAAAGGAGAAATGT
GTAATAATTTCTCAACCAATCTTATCCACTCGGAAATAGGAACTATGGAA
ATCTGGCTGAGAATTGATTTGGGTGGAatgaaacaaattaaatttgttga
tattttcgaTCGTACAATAGTAAAACCTTATCATCAACGACTTGCTTCTA
CAGATATTATTGTGTATGGTCAGAATCCTATGGATAACCGCCAGCTTTGC
AGTACTATAACATTGCAAGATACTGAAAATGATGATAAGGTTTTTAAAGT
TTGTAACGAGATTTTGACTGGGAGTGGAGTTGAATTGTACAAGGCCCCCG
CCGGTACTAGGCAAATGATTCATCTTTGTGAAATAGCTGTCTACGGACCT
ACAAATTAAACTTCATTATTTTTACTATATCATACAGGGTGTTTCACAAA
AAAGTAAACTGAAAAAGCAAGGCAgtttttagaaagaaagaaagatcaAG
TCATAAATGCACAATGGTATGACTTTTCAACACTGGAGACCAATTAAGCT
CTCCTTAGATACGACCACCACCATCACCTTGCTTTACTTTGAAGCACATC
TCAATGCTGAGACTTCGCCCATATTTGAAAAAGATTCCAGGAAAGTAAAT
TGCTCAACGACCAGCTTGCCATCAATGcagatttatttttcatttactgG
GGAGAGGATTATACATTTGTCACCATTGATTTTGAGTCCATTTCTTGCAC
ATGCGGATTCCAGTTGGTGGGAAGCAAgttcaagaagaagaaaagtaaCG
GTTATGAGGGTTGTATCGTCTGCATATCTAACATCGCAGCATAATTCATC
ATCAAGCGTAATTGTTTCTTGAAGACATTTTAGTTCTTTCATTAAGAAAT
CGAGAAAGAGGTTGAATAGGGTAGGGGACAATAAACATCCCTGTCGTACA
CCAATTATAACTTTAAACCACTCAGTAAGCCGACCGTTAACAATAACTGA
ACAAGTTGTATTGTCGTACATGGTTTTGACGATGTTGACAATATTGGTCG
AGACACCAATGCCGCACCAATGGCAAGCAACATCTTCCATAGTGCCTCTC
TCCAGACAGTGTCGAACGCActtttaaaatcaatgaaattgaaatgtagA
TTGACACCACACTCTTTTGTCTTCTCCGTAATTTGCCTGACGATAAAAAT
CGCATCTACTTAGATAAAatcattttaagaaaaatattattctATTTAAA
GGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043282-exon-sc0004090-1491911889:1699..1768 | TCONS_00043282-exon-sc0004090-1491911889:1699..1768 | Clytia hemisphaerica | exon |
| TCONS_00043282-exon-sc0004090-1510915933:1699..1768 | TCONS_00043282-exon-sc0004090-1510915933:1699..1768 | Clytia hemisphaerica | exon |
| TCONS_00043282-exon-sc0004090-1575043694:1699..1768 | TCONS_00043282-exon-sc0004090-1575043694:1699..1768 | Clytia hemisphaerica | exon |
| TCONS_00043282-exon-sc0004090-1491911889:4812..5065 | TCONS_00043282-exon-sc0004090-1491911889:4812..5065 | Clytia hemisphaerica | exon |
| TCONS_00043282-exon-sc0004090-1510915933:4812..5065 | TCONS_00043282-exon-sc0004090-1510915933:4812..5065 | Clytia hemisphaerica | exon |
| TCONS_00043282-exon-sc0004090-1575043694:4812..5065 | TCONS_00043282-exon-sc0004090-1575043694:4812..5065 | Clytia hemisphaerica | exon |
| TCONS_00043282-exon-sc0004090-1491911889:5383..5503 | TCONS_00043282-exon-sc0004090-1491911889:5383..5503 | Clytia hemisphaerica | exon |
| TCONS_00043282-exon-sc0004090-1510915933:5383..5503 | TCONS_00043282-exon-sc0004090-1510915933:5383..5503 | Clytia hemisphaerica | exon |
| TCONS_00043282-exon-sc0004090-1575043694:5383..5503 | TCONS_00043282-exon-sc0004090-1575043694:5383..5503 | Clytia hemisphaerica | exon |
| TCONS_00043282-exon-sc0004090-1491911889:7000..8303 | TCONS_00043282-exon-sc0004090-1491911889:7000..8303 | Clytia hemisphaerica | exon |
| TCONS_00043282-exon-sc0004090-1510915933:7000..8303 | TCONS_00043282-exon-sc0004090-1510915933:7000..8303 | Clytia hemisphaerica | exon |
| TCONS_00043282-exon-sc0004090-1575043694:7000..8303 | TCONS_00043282-exon-sc0004090-1575043694:7000..8303 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004090 | supercontig | sc0004090:1699..8303 + |
Blast
The following BLAST results are available for this feature:
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