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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043254 ID=TCONS_00043254|Name=TCONS_00043254|organism=Clytia hemisphaerica|type=transcript|length=1180bp
CCCTGCCACACCACCCAGGAAAGATGTTCTCTGCCGACGTTTTACGCCGT
ACAAAACAAAAGATCTTTGTTTCTCGCGATATTTTCTCGAGCTACACTAC
CGCCGTTTTTATTCCCGACGAAAAATCTGAAAGTCTTCGTTCTGCTCTCC
TATCTACCACGAACCATCTCAGAACACCTTCTACGATCATTCGTGTCGAT
GCCGCCCCTGGCTTTCAGTCTCTCAAGACAGACAAAAGTTTATCATCTGC
CGGTATTTTAATTAACTTTGGTAGAATTAAGAATAAAAACAGTAACGCAA
CAATCGACAAGGGTATTCAAGAGCTCGAAAATGAACTAATCCGTATTGAG
CGAGAGGGGAAGCCATTAACCCCGCTTGCTCTCGAGCAAGCCCTCCACAA
CCTCAACACACGTATTCGATCCCGTGGTTTGTCTGCGAAAGAAATCATCC
ATCGACGAGATCAATCAACCGGCAACGAAATCGACGTGAAGGACAACACA
CTTCTTCACCAACACGAGCATCTCCGACAACGAAACCATCAACCCAGTGC
CCGATCCAAAGGCCAAGGCGGAGACGCCGCTAAAGATGCTACCGTCCAAG
TCGGTGACTTGGTATTCATCAAACAAGAAGGCTCCAAGCATAAATCTAGG
GAGCAATATATCGTTACAAATATTGTTGGCCATATGGCTACCGTTCAGAA
ATTCGATAATTCACGTTTCATGTCTCGAAAGTACGATCTACCTTTGACAC
GTATATACCCCGCAACTCCCCGCCAACGACTATACTTCCACGATTGGGAC
AACAATCATATCGACGACTTCACTTCATCTGACGAGGAAACAACTCTTCA
ACCAGATGACACCCCCAACATTGACGGTGCTGACCCTGAGGAAGACACCA
ACAATCGTGCGAGACGCAATGTTAGGCGCCCACGGTATCTTGATGATTAT
GTTGTAAATATTGAAGGGTGAAGTGCTGGTAACCTCTCCCCTTatttctt
gtttattttatttggtTATGTTTGAAATGGCGGACAGATTGATTGCACCA
TTTGTATATAGTTTTGGTTTGTTTGCATTTGGACAAACGTATTTGGTTTG
TTGATTTATATTACTTTGGTGTTAAAAGTGGAGAACAGAAAGTAATTGCG
CCATTTGAGTTATTGATGTACATAGATTGT Run BLAST on NCBI protein sequence of TCONS_00043254-protein >TCONS_00043254-protein ID=TCONS_00043254-protein|Name=TCONS_00043254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
LPHHPGKMFSADVLRRTKQKIFVSRDIFSSYTTAVFIPDEKSESLRSALL
STTNHLRTPSTIIRVDAAPGFQSLKTDKSLSSAGILINFGRIKNKNSNAT
IDKGIQELENELIRIEREGKPLTPLALEQALHNLNTRIRSRGLSAKEIIH
RRDQSTGNEIDVKDNTLLHQHEHLRQRNHQPSARSKGQGGDAAKDATVQV
GDLVFIKQEGSKHKSREQYIVTNIVGHMATVQKFDNSRFMSRKYDLPLTR
IYPATPRQRLYFHDWDNNHIDDFTSSDEETTLQPDDTPNIDGADPEEDTN
NRARRNVRRPRYLDDYVVNIEG Run BLAST on NCBI transcript from alignment at sc0004067:40..1219 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043254 ID=TCONS_00043254|Name=TCONS_00043254|organism=Clytia hemisphaerica|type=transcript|length=1180bp|location=Sequence derived from alignment at sc0004067:40..1219 (Clytia hemisphaerica)
ACAATCTATGTACATCAATAACTCAAATGGCGCAATTACTTTCTGTTCTC
CACTTTTAACACCAAAGTAATATAAATCAACAAACCAAATACGTTTGTCC
AAATGCAAACAAACCAAAACTATATACAAATGGTGCAATCAATCTGTCCG
CCATTTCAAACATAaccaaataaaataaacaagaaatAAGGGGAGAGGTT
ACCAGCACTTCACCCTTCAATATTTACAACATAATCATCAAGATACCGTG
GGCGCCTAACATTGCGTCTCGCACGATTGTTGGTGTCTTCCTCAGGGTCA
GCACCGTCAATGTTGGGGGTGTCATCTGGTTGAAGAGTTGTTTCCTCGTC
AGATGAAGTGAAGTCGTCGATATGATTGTTGTCCCAATCGTGGAAGTATA
GTCGTTGGCGGGGAGTTGCGGGGTATATACGTGTCAAAGGTAGATCGTAC
TTTCGAGACATGAAACGTGAATTATCGAATTTCTGAACGGTAGCCATATG
GCCAACAATATTTGTAACGATATATTGCTCCCTAGATTTATGCTTGGAGC
CTTCTTGTTTGATGAATACCAAGTCACCGACTTGGACGGTAGCATCTTTA
GCGGCGTCTCCGCCTTGGCCTTTGGATCGGGCACTGGGTTGATGGTTTCG
TTGTCGGAGATGCTCGTGTTGGTGAAGAAGTGTGTTGTCCTTCACGTCGA
TTTCGTTGCCGGTTGATTGATCTCGTCGATGGATGATTTCTTTCGCAGAC
AAACCACGGGATCGAATACGTGTGTTGAGGTTGTGGAGGGCTTGCTCGAG
AGCAAGCGGGGTTAATGGCTTCCCCTCTCGCTCAATACGGATTAGTTCAT
TTTCGAGCTCTTGAATACCCTTGTCGATTGTTGCGTTACTGTTTTTATTC
TTAATTCTACCAAAGTTAATTAAAATACCGGCAGATGATAAACTTTTGTC
TGTCTTGAGAGACTGAAAGCCAGGGGCGGCATCGACACGAATGATCGTAG
AAGGTGTTCTGAGATGGTTCGTGGTAGATAGGAGAGCAGAACGAAGACTT
TCAGATTTTTCGTCGGGAATAAAAACGGCGGTAGTGTAGCTCGAGAAAAT
ATCGCGAGAAACAAAGATCTTTTGTTTTGTACGGCGTAAAACGTCGGCAG
AGAACATCTTTCCTGGGTGGTGTGGCAGGG Coding sequence (CDS) from alignment at sc0004067:40..1219 >TCONS_00043254 ID=TCONS_00043254|Name=TCONS_00043254|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at sc0004067:40..1219 (Clytia hemisphaerica)
TCACCCTTCAATATTTACAACATAATCATCAAGATACCGTGGGCGCCTAA
CATTGCGTCTCGCACGATTGTTGGTGTCTTCCTCAGGGTCAGCACCGTCA
ATGTTGGGGGTGTCATCTGGTTGAAGAGTTGTTTCCTCGTCAGATGAAGT
GAAGTCGTCGATATGATTGTTGTCCCAATCGTGGAAGTATAGTCGTTGGC
GGGGAGTTGCGGGGTATATACGTGTCAAAGGTAGATCGTACTTTCGAGAC
ATGAAACGTGAATTATCGAATTTCTGAACGGTAGCCATATGGCCAACAAT
ATTTGTAACGATATATTGCTCCCTAGATTTATGCTTGGAGCCTTCTTGTT
TGATGAATACCAAGTCACCGACTTGGACGGTAGCATCTTTAGCGGCGTCT
CCGCCTTGGCCTTTGGATCGGGCACTGGGTTGATGGTTTCGTTGTCGGAG
ATGCTCGTGTTGGTGAAGAAGTGTGTTGTCCTTCACGTCGATTTCGTTGC
CGGTTGATTGATCTCGTCGATGGATGATTTCTTTCGCAGACAAACCACGG
GATCGAATACGTGTGTTGAGGTTGTGGAGGGCTTGCTCGAGAGCAAGCGG
GGTTAATGGCTTCCCCTCTCGCTCAATACGGATTAGTTCATTTTCGAGCT
CTTGAATACCCTTGTCGATTGTTGCGTTACTGTTTTTATTCTTAATTCTA
CCAAAGTTAATTAAAATACCGGCAGATGATAAACTTTTGTCTGTCTTGAG
AGACTGAAAGCCAGGGGCGGCATCGACACGAATGATCGTAGAAGGTGTTC
TGAGATGGTTCGTGGTAGATAGGAGAGCAGAACGAAGACTTTCAGATTTT
TCGTCGGGAATAAAAACGGCGGTAGTGTAGCTCGAGAAAATATCGCGAGA
AACAAAGATCTTTTGTTTTGTACGGCGTAAAACGTCGGCAGAGAACATCT
TTCCTGGGTGGTGTGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043254-exon-sc0004067-1491911889:40..1219 | TCONS_00043254-exon-sc0004067-1491911889:40..1219 | Clytia hemisphaerica | exon |
| TCONS_00043254-exon-sc0004067-1510915933:40..1219 | TCONS_00043254-exon-sc0004067-1510915933:40..1219 | Clytia hemisphaerica | exon |
| TCONS_00043254-exon-sc0004067-1575043694:40..1219 | TCONS_00043254-exon-sc0004067-1575043694:40..1219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004067 | supercontig | sc0004067:40..1219 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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