TCONS_00043215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043215
Unique NameTCONS_00043215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043215 ID=TCONS_00043215|Name=TCONS_00043215|organism=Clytia hemisphaerica|type=transcript|length=441bp
ATAAAAAGATAACACAATTGAATGATTGGATGTTAATGATGTTAAAAATG
AAACGGTTGAAACTAATGGCATATAATGATGAATCTACTGTCTATCAGAG
gtggtGATGCAGTAAGACGGATTATCCTTGAAATTTCCATCAGAAAAAGC
CCTTCAAAAAGAACACTTAAAATGAaagctttttaacattttgttaTGGC
TTGTCCAATTAAATTTGAACGTTCAAAGTCTATTCATGGTTGGATTAAAC
TGTATTTTGAAAGTCAGGCAGACTACGTGAGTATGGATCAACTCGAAACA
AACACTATATCACATTTTCTATCCCTATTTATCCAATGATTATCTTAGTT
ttattattttgcaattttgtcaaactttaccaaattttatttctgaaaca
atgaaatacttcttgaattaCTCTGCTATAATAACTGTgat
Run BLAST on NCBI

transcript from alignment at sc0004018:3565..4145+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043215 ID=TCONS_00043215|Name=TCONS_00043215|organism=Clytia hemisphaerica|type=transcript|length=581bp|location=Sequence derived from alignment at sc0004018:3565..4145+ (Clytia hemisphaerica)
ATAAAAAGATAACACAATTGAATGATTGGATGTTAATGATGTTAAAAATG
AAACGGTTGAAACTAATGGCATATAATGATGAATCTACTGTCTATCAGAG
GTAAATTTTTCTCAGTACATTAGAGCTAAGATGTAGTGGTATTTAAGAAA
ATGAACTTTTGTTTAGTAAATTTTGTTTTACAAAATTTGGTCAAAAATGG
CATTTTGAATAAACTCTTTTGCTGTGtttttttttttcaggtggtGATGC
AGTAAGACGGATTATCCTTGAAATTTCCATCAGAAAAAGCCCTTCAAAAA
GAACACTTAAAATGAaagctttttaacattttgttaTGGCTTGTCCAATT
AAATTTGAACGTTCAAAGTCTATTCATGGTTGGATTAAACTGTATTTTGA
AAGTCAGGCAGACTACGTGAGTATGGATCAACTCGAAACAAACACTATAT
CACATTTTCTATCCCTATTTATCCAATGATTATCTTAGTTttattatttt
gcaattttgtcaaactttaccaaattttatttctgaaacaatgaaatact
tcttgaattaCTCTGCTATAATAACTGTgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026932XLOC_026932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043215-exon-sc0004018-1491911889:3565..3664TCONS_00043215-exon-sc0004018-1491911889:3565..3664Clytia hemisphaericaexon
TCONS_00043215-exon-sc0004018-1510915933:3565..3664TCONS_00043215-exon-sc0004018-1510915933:3565..3664Clytia hemisphaericaexon
TCONS_00043215-exon-sc0004018-1575043694:3565..3664TCONS_00043215-exon-sc0004018-1575043694:3565..3664Clytia hemisphaericaexon
TCONS_00043215-exon-sc0004018-1491911889:3805..4145TCONS_00043215-exon-sc0004018-1491911889:3805..4145Clytia hemisphaericaexon
TCONS_00043215-exon-sc0004018-1510915933:3805..4145TCONS_00043215-exon-sc0004018-1510915933:3805..4145Clytia hemisphaericaexon
TCONS_00043215-exon-sc0004018-1575043694:3805..4145TCONS_00043215-exon-sc0004018-1575043694:3805..4145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004018supercontigsc0004018:3565..4145 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.4451	13.1664	5.7138	4.74308	58.9798	41.066	33.0296	33.6827	24.1858	23.194	17.4594	10.3438	10.3591	10.8961	6.6862	5.12523	12.5129	12.59	4.38909	9.35583	11.8282	8.43775	21.7417	17.0565	17.4036	29.0543	7.75836	9.17506	14.4271	16.2553
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top