TCONS_00043207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043207
Unique NameTCONS_00043207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043207 ID=TCONS_00043207|Name=TCONS_00043207|organism=Clytia hemisphaerica|type=transcript|length=606bp
GATTTTtctaaatagattttttttgttGACTTGAGTGTGGGGAAAGAAAA
CAGTTGATGTATTAAGGAACATTTAAACAAGCAagGGATTATTCGAACGA
GCAAAAGAGAAAGTCGTAAAGATTTCCTACCCTTTAGATTGAAGGATATC
AACAGCATTGGATAACTCACTAATGATTACGACTAAAAGGACATTGCGGA
GAGGACAACAAACAAGTGAAGATAGTTTTTGTAGAAATAAATTTGAtcta
aaatctttaattttcctGTCTGAGTTAGCCTTTCTTTTGTTAAGAAAGTT
TGTTTCTCTCGGGCTTTTCTAAAAGGTAGCGGTCTACCCATATAACAATA
ATATCGATTCTAtccctaaaaaatattttttgaaaaaactttgaataTCT
TAAAAGTGGTCTGAGAATTTCGCAAAGATAACATGTTTCTTATGATTTGA
AGCAACGATGTAAAAAATAATAGATAACCAACTACCTCTAGAAGGCACTT
CTCCCAAGAGAACAACcattgttttcctattgaaatgagcactcctttaa
atagctctgtgtgcagtgcgtgttatgcttttagctagattttgacacac
tttttg
Run BLAST on NCBI

transcript from alignment at sc0004015:1086..2893-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043207 ID=TCONS_00043207|Name=TCONS_00043207|organism=Clytia hemisphaerica|type=transcript|length=1808bp|location=Sequence derived from alignment at sc0004015:1086..2893- (Clytia hemisphaerica)
GATTTTTCTAAATAGATTTTTTTTGTTGACTTGAGTGTGGGGAAAGAAAA
CAGTTGATGTATTAAGGAACATTTAAACAAGCAGTAAGTGAAACTTCTAT
ATTAATCTTTAAAAAGTCTTGAAAAATTTACATTCCTTTCTAGCTAAAAT
TGAGCCAATCTGTAAGTCACAACAGACAGGGATTTCAGAATTCGCTCTTA
GAGCATTTCACAGAATATTAGTACAGTTTGGAGCGTTGTTTTTTAGTTTG
GTATATTCATTTATGCCAACATTTTCATGCTGATTTCTTAGACATTTCTG
AAATATGAGGCCGAGTTTGTTTTTTAATTATTTCTAAGGTTTTGGCTCAA
ATCAAACCTCACGTTCTAATAAAATTGCTCGGTTAAACAGATTTTATTTC
AAATTTTAATATACCCTTTTTCTAAGTTACTTAAATGTCTTGAAAATAGA
AGATATATTGATTAGGTGAGCTTTCAACTTGTATTCATATTTTTCTTCTT
TAGAGGGATTATTCGAACGAGCAAAAGAGAAAGTCGTAAAGATTTCCTAC
CGTAATTTTACATTTGCTTAATAAAGACTTATGGGACATTACTTTTTGTG
CAAAGCAGCAAAATTGTGTTCAAATGACCTGGAATGTCATTGTACGCACT
ATGATTTTATTATTCATATTTCACCTTTATTACATTTGCTGCATAAGGGG
CCGGTGTAGGACATTGCTAACAATTCGAATTTGCAAATAATACACCCCTG
TCTCACAGCCCCGGTGGTACTTTTTTCCTCAGTGGGAAAAAAATTTCCTG
TCGAAATTCAAGTGGGAATAAAAAGTTCCAAGGTTAAAAACTCAATTCGG
GGTGGTTTTGGAGTGCAGTTTTTAAACATTGATTTTCGGATGGGGATGAA
ATCATAGTCAATTTCTCAGTGGGAGTGAAATTCCCGGTAGTTGTTCTACC
GGGGACGNAAGTTCCAAGGTTAAAAACTCCATTCGGGGTGGTTTTGGAGT
GCAGTTTTTAAACATTGATTTTCGGATGGGGATGAAATCATAGTCAATTT
CTCAGTGGGAGTGAAATTCCCGGTAGTTGTTCTACCGGGGACGAAATTTT
TGCCAAATATTCCCGTGGGGCTGGGATCCCAGCGGGTCTGTGACACGGGT
TTAATAATTAATGAAAATTAATAAAACCTTGTAAATTTTGAGTTTATTTT
AATAATATTGCTAGTAATCTTTGTTGTGATAGGATTGCACAACATAAAGC
ACTTTCTGTAAAAGCAATTTTAAAGTGCTAACTTTGAACAATATCAATAA
TTATTTTTTAACATTTTTTCTTCTAAATCATAGCTTTAGATTGAAGGATA
TCAACAGCATTGGATAACTCACTAATGATTACGACTAAAAGGACATTGCG
GAGAGGACAACAAACAAGTGAAGATAGTTTTTGTAGAAATAAATTTGATC
TAAAATCTTTAATTTTCCTGTCTGAGTTAGCCTTTCTTTTGTTAAGAAAG
TTTGTTTCTCTCGGGCTTTTCTAAAAGGTAGCGGTCTACCCATATAACAA
TAATATCGATTCTATCCCTAAAAAATATTTTTTGAAAAAACTTTGAATAT
CTTAAAAGTGGTCTGAGAATTTCGCAAAGATAACATGTTTCTTATGATTT
GAAGCAACGATGTAAAAAATAATAGATAACCAACTACCTCTAGAAGGCAC
TTCTCCCAAGAGAACAACCATTGTTTTCCTATTGAAATGAGCACTCCTTT
AAATAGCTCTGTGTGCAGTGCGTGTTATGCTTTTAGCTAGATTTTGACAC
ACTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026926XLOC_026926Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043207-exon-sc0004015-1575043694:2811..2893TCONS_00043207-exon-sc0004015-1575043694:2811..2893Clytia hemisphaericaexon
TCONS_00043207-exon-sc0004015-1575043694:2343..2390TCONS_00043207-exon-sc0004015-1575043694:2343..2390Clytia hemisphaericaexon
TCONS_00043207-exon-sc0004015-1575043694:1086..1560TCONS_00043207-exon-sc0004015-1575043694:1086..1560Clytia hemisphaericaexon
TCONS_00043207-exon-sc0004015-1510915933:2811..2893TCONS_00043207-exon-sc0004015-1510915933:2811..2893Clytia hemisphaericaexon
TCONS_00043207-exon-sc0004015-1510915933:2343..2390TCONS_00043207-exon-sc0004015-1510915933:2343..2390Clytia hemisphaericaexon
TCONS_00043207-exon-sc0004015-1510915933:1086..1560TCONS_00043207-exon-sc0004015-1510915933:1086..1560Clytia hemisphaericaexon
TCONS_00043207-exon-sc0004015-1491911889:2811..2893TCONS_00043207-exon-sc0004015-1491911889:2811..2893Clytia hemisphaericaexon
TCONS_00043207-exon-sc0004015-1491911889:2343..2390TCONS_00043207-exon-sc0004015-1491911889:2343..2390Clytia hemisphaericaexon
TCONS_00043207-exon-sc0004015-1491911889:1086..1560TCONS_00043207-exon-sc0004015-1491911889:1086..1560Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004015supercontigsc0004015:1086..2893 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.205359	0.61538	1.25374	1.28997	4.68442	2.85628	7.85501	6.9963	3.34654	4.00511	2.82387	3.6734	2.32278	2.18475	1.32699	0.895857	1.0633	1.47686	4.16775	3.72051	0.595444	2.56803	1.43229	1.12433	3.02408	6.07846	1.24825	0.875825	3.97141	3.16812
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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