TCONS_00043200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043200
Unique NameTCONS_00043200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043200 ID=TCONS_00043200|Name=TCONS_00043200|organism=Clytia hemisphaerica|type=transcript|length=400bp
GTTGGAGCTAAACCTTAGCTCAGGTTAATTCCAAGTCGAATGAAGTACAT
CCCGCCACCGCACCGAGGCGGCTATGAAATAGTATATTTCGGCTGCCGGT
TATTCTTTCCTTCGACTATATATATCCTACCGTCAAACCCCTTTCAGCGC
AGTTCAGCTCAGTCTCAATTGATCACAACTTCAATCTTTCATCATCTGAA
TAACGAACAACACGACGAACAACGACCACCATTTCAGCCATTTTGCCGCT
ATATCTGCTACACGTGTCAGCAACCAGCGTTGAATCCAACGGCCCGCCCA
AACTTTACAATTCCATCAACAGTGCCAGTTTCTTCAGTAGGCGATGAAAC
CAATATCCTGGTAACAGTATTCGAAAGCATCCAGCGAGCTGGCTTCGTNN
Run BLAST on NCBI

protein sequence of TCONS_00043200-protein

>TCONS_00043200-protein ID=TCONS_00043200-protein|Name=TCONS_00043200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MKYIPPPHRGGYEIVYFGCRLFFPSTIYILPSNPFQRSSAQSQLITTSIF
HHLNNEQHDEQRPPFQPFCRYICYTCQQPALNPTARPNFTIPSTVPVSSV
GDETNILVTVFESIQRAGFX
Run BLAST on NCBI

transcript from alignment at sc0004007:3866..4265

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043200 ID=TCONS_00043200|Name=TCONS_00043200|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at sc0004007:3866..4265 (Clytia hemisphaerica)
NNACGAAGCCAGCTCGCTGGATGCTTTCGAATACTGTTACCAGGATATTG
GTTTCATCGCCTACTGAAGAAACTGGCACTGTTGATGGAATTGTAAAGTT
TGGGCGGGCCGTTGGATTCAACGCTGGTTGCTGACACGTGTAGCAGATAT
AGCGGCAAAATGGCTGAAATGGTGGTCGTTGTTCGTCGTGTTGTTCGTTA
TTCAGATGATGAAAGATTGAAGTTGTGATCAATTGAGACTGAGCTGAACT
GCGCTGAAAGGGGTTTGACGGTAGGATATATATAGTCGAAGGAAAGAATA
ACCGGCAGCCGAAATATACTATTTCATAGCCGCCTCGGTGCGGTGGCGGG
ATGTACTTCATTCGACTTGGAATTAACCTGAGCTAAGGTTTAGCTCCAAC

Coding sequence (CDS) from alignment at sc0004007:3866..4265

>TCONS_00043200 ID=TCONS_00043200|Name=TCONS_00043200|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0004007:3866..4265 (Clytia hemisphaerica)
NACGAAGCCAGCTCGCTGGATGCTTTCGAATACTGTTACCAGGATATTGG
TTTCATCGCCTACTGAAGAAACTGGCACTGTTGATGGAATTGTAAAGTTT
GGGCGGGCCGTTGGATTCAACGCTGGTTGCTGACACGTGTAGCAGATATA
GCGGCAAAATGGCTGAAATGGTGGTCGTTGTTCGTCGTGTTGTTCGTTAT
TCAGATGATGAAAGATTGAAGTTGTGATCAATTGAGACTGAGCTGAACTG
CGCTGAAAGGGGTTTGACGGTAGGATATATATAGTCGAAGGAAAGAATAA
CCGGCAGCCGAAATATACTATTTCATAGCCGCCTCGGTGCGGTGGCGGGA
TGTACTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026920XLOC_026920Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043200-proteinTCONS_00043200-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043200-exon-sc0004007-1491911889:3866..4265TCONS_00043200-exon-sc0004007-1491911889:3866..4265Clytia hemisphaericaexon
TCONS_00043200-exon-sc0004007-1510915933:3866..4265TCONS_00043200-exon-sc0004007-1510915933:3866..4265Clytia hemisphaericaexon
TCONS_00043200-exon-sc0004007-1575043694:3866..4265TCONS_00043200-exon-sc0004007-1575043694:3866..4265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004007supercontigsc0004007:3866..4265 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.0795	18.3026	8.18945	10.2319	11.3035	11.9697	8.96913	10.5472	8.56999	9.09423	10.5874	6.68867	5.67237	5.82066	3.33753	4.42832	6.09474	5.15265	3.1596	3.38333	5.74057	3.59321	8.32563	9.93394	10.6204	7.35546	3.2099	4.15127	8.19401	6.93092
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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