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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043196 ID=TCONS_00043196|Name=TCONS_00043196|organism=Clytia hemisphaerica|type=transcript|length=1161bp
TGCTTAACCCCCtcgatatcctctcttataaagatgcttacccctggata
tcgtattttttacttgaaaagacactttaccccctggttaACCgttccct
tgtagatatttaaccccctggatatccacttttgaaaaaatcgttaaccc
ccctggatatcggatatcctcaacaggggagacacagactatttctggaa
aagcccattacagCATACTTAATACTTAATTTATCATAACATGAATATAT
AACATAtttgattctcaaaaaagtttctcccTAAGTTTCTTCCTTCCTTA
TTTTTCCTAAAGCTTATCATGATTTTTTCCCCTCAATATATCTCAAAAAT
ACgtaaaaatttcattcaaactCGGATTCCCCCGGGTCACTATGTATGCT
CTCGGTAAATTAgcttgaaaatgcttcaaaaatgtCATAGAAATCGCTTG
AGGAAGTATCTTtcctaatatttttttaataatgtttttctGACTTACTC
TCCTTTAGTTCTCTAAATTTCAATCAAACTTGGTTCTCCAAGGTCACGAA
ATCTGGTGTGTAAAAATGTTATGTGCCACTGTGCCACTTCTGCATAACCA
GGTTGTTTCACAAAGTTTTATGCTCTCGATAAATTGAGTCCGCTCTAAAA
ATGTCTTATAAACACTGTCCCTTTAATGTTTCAGATAATATTTTCCTAAT
CTAATCCCTTCGACTTCTCAAAAAGACACCAAAATTTCGATCAAGATCGG
TTTGCTCAGATTCACGAAGTTTTTGGGTGAATGTAAATGTTCGTGTGCTA
ATCAATGTATTGCTCTCCGATTATTGTAGTTTTTATTTCTTAACCaagtt
ttttgtaattttgtatGCTGTTGGTATATTAGCTTGAATCCACTTCAAAA
AATTGTTAGAGATACCTTGAGAAATAAACGGCTGGACCATTGAATTAGCC
TGCGAATGCCGTTTTGGAAAACCCAACATTCTAGCTGTACGTTGAAGATC
TCGATTGACAAATTTTCTGCTATCTCTAATGAATGGATTAGGGTGATCAA
AATGTGGTATCGATTCGTAGTTGCtcgatttcaaattattgaaaaattcc
TTTTCAGTGATTTTACCCTCCGCAACATCTGTACGTAACGCTAATAAGGC
TTTCATAAANN Run BLAST on NCBI protein sequence of TCONS_00043196-protein >TCONS_00043196-protein ID=TCONS_00043196-protein|Name=TCONS_00043196-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
FMKALLALRTDVAEGKITEKEFFNNLKSSNYESIPHFDHPNPFIRDSRKF
VNRDLQRTARMLGFPKRHSQANSMVQPFISQGISNNFLKWIQANIPTAYK
ITKNLVKK Run BLAST on NCBI transcript from alignment at sc0003998:7579..8739 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043196 ID=TCONS_00043196|Name=TCONS_00043196|organism=Clytia hemisphaerica|type=transcript|length=1161bp|location=Sequence derived from alignment at sc0003998:7579..8739 (Clytia hemisphaerica)
NNTTTATGAAAGCCTTATTAGCGTTACGTACAGATGTTGCGGAGGGTAAA
ATCACTGAAAAggaatttttcaataatttgaaatcgaGCAACTACGAATC
GATACCACATTTTGATCACCCTAATCCATTCATTAGAGATAGCAGAAAAT
TTGTCAATCGAGATCTTCAACGTACAGCTAGAATGTTGGGTTTTCCAAAA
CGGCATTCGCAGGCTAATTCAATGGTCCAGCCGTTTATTTCTCAAGGTAT
CTCTAACAATTTTTTGAAGTGGATTCAAGCTAATATACCAACAGCataca
aaattacaaaaaacttGGTTAAGAAATAAAAACTACAATAATCGGAGAGC
AATACATTGATTAGCACACGAACATTTACATTCACCCAAAAACTTCGTGA
ATCTGAGCAAACCGATCTTGATCGAAATTTTGGTGTCTTTTTGAGAAGTC
GAAGGGATTAGATTAGGAAAATATTATCTGAAACATTAAAGGGACAGTGT
TTATAAGACATTTTTAGAGCGGACTCAATTTATCGAGAGCATAAAACTTT
GTGAAACAACCTGGTTATGCAGAAGTGGCACAGTGGCACATAACATTTTT
ACACACCAGATTTCGTGACCTTGGAGAACCAAGTTTGATTGAAATTTAGA
GAACTAAAGGAGAGTAAGTCagaaaaacattattaaaaaaatattaggaA
AGATACTTCCTCAAGCGATTTCTATGacatttttgaagcattttcaagcT
AATTTACCGAGAGCATACATAGTGACCCGGGGGAATCCGagtttgaatga
aatttttacGTATTTTTGAGATATATTGAGGGGAAAAAATCATGATAAGC
TTTAGGAAAAATAAGGAAGGAAGAAACTTAgggagaaacttttttgagaa
tcaaaTATGTTATATATTCATGTTATGATAAATTAAGTATTAAGTATGct
gtaatgggcttttccagaaatagtctgtgtctcccctgttgaggatatcc
gatatccaggggggttaacgattttttcaaaagtggatatccagggggtt
aaatatctacaagggaacGGTtaaccagggggtaaagtgtcttttcaagt
aaaaaatacgatatccaggggtaagcatctttataagagaggatatcgaG
GGGGTTAAGCA Coding sequence (CDS) from alignment at sc0003998:7579..8739 >TCONS_00043196 ID=TCONS_00043196|Name=TCONS_00043196|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0003998:7579..8739 (Clytia hemisphaerica)
TTTATGAAAGCCTTATTAGCGTTACGTACAGATGTTGCGGAGGGTAAAAT
CACTGAAAAggaatttttcaataatttgaaatcgaGCAACTACGAATCGA
TACCACATTTTGATCACCCTAATCCATTCATTAGAGATAGCAGAAAATTT
GTCAATCGAGATCTTCAACGTACAGCTAGAATGTTGGGTTTTCCAAAACG
GCATTCGCAGGCTAATTCAATGGTCCAGCCGTTTATTTCTCAAGGTATCT
CTAACAATTTTTTGAAGTGGATTCAAGCTAATATACCAACAGCatacaaa
attacaaaaaacttGGTTAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043196-exon-sc0003998-1491911889:7579..8739 | TCONS_00043196-exon-sc0003998-1491911889:7579..8739 | Clytia hemisphaerica | exon |
| TCONS_00043196-exon-sc0003998-1510915933:7579..8739 | TCONS_00043196-exon-sc0003998-1510915933:7579..8739 | Clytia hemisphaerica | exon |
| TCONS_00043196-exon-sc0003998-1575043694:7579..8739 | TCONS_00043196-exon-sc0003998-1575043694:7579..8739 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003998 | supercontig | sc0003998:7579..8739 . |
Blast
The following BLAST results are available for this feature:
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