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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043174 ID=TCONS_00043174|Name=TCONS_00043174|organism=Clytia hemisphaerica|type=transcript|length=1893bp
CTATGCACTCAAGTCTTTAGCAAAGGTTAAAGGTCCAAAGAAGTTCCCCG
ACATTTCAATGGTCGACAAATCAATGATCATCCTATCGAGTAACGAGATC
AAACGTGCTGAACACTACTACTGGTGGAAAGGTTCAGTAGAAGTTCGTCA
TTTCATCAAAGCTGAGAAGTACAAACGTTTCACCAAAGATATCAACGGCA
TACTCACCTACACTGGACGAATACTCGACAGCAACGAAGTTCAAATCCCC
ACACCAATGACGAAAGCTATGATCGATCTCCAATCAACAACCTTCTGCGT
GCCAGTCCTTGACAAGCATTCACCAATCTCCTACGCGATCGTCAACGAAG
CTCACTGGGACAACAAAGTGGTCAAGCACAGTGGAGTCGAATCAACTTGG
CGTTACGTACTCAAACGAGCATTCATCATTGAAGGACGAGACATCGTGAA
GATGGTACGTCGATCATGCCAGCTATGTCGTCATATCCAGAAGAAGAAAG
TCGAAGTCGAAATGGGGAAGATGTCAAACGCATCACTCACCATCGCACCT
GCATTCTACAACAGTCAAGTGGATTTGGCAGGACCATTCCTGTCTTACGA
CAGCTACAACAAACGTAAGACGATTAAAATTTGGCTAGTCGTTTTCGTCT
GCTCAACAACATCGACAACCTCAATCAAAGTGATGGACGATTACAGCAGC
CCAGCATTCTTCCAAGCATTCACACGTTTCGCCTGCGACGCTGGCTACCC
GAAGTCAGTATTCGTCGATCGTGGTTCACAAATCCTCAAAACCTACAACA
ACGCGAAAATCAACTTCAACGATACGAAATACAAGCTACACTTCAACGTC
GACGTCGAATTCGAATTGTGTCCAGTCGATGGGCATAACTACAACGGCAA
AGTCGAGCGACGAATTCGTGAAATCAAGCAATCACTTACGAAAAGCTACA
ACGATCAAAAGTTGTCTGTTCTCCAATGGGAGACAGTTGCAGCAGAGATA
GCAAATTGTATCAACGATCTTCCAATTTCACTCGGTAACTACGTTTCTGA
TTTTGAGTCAATGGATTTGATAACCCCAAATAGACTGAAACTTGGGCGTA
ACAATGAACGTAGTCCTGTGGGTCCATACGAACTGTCTAACGACCCTAAG
AAAATTGTCCAAGCCAACTCGTTAATCTATCAATCCTGGTTTGATAGTTG
GCTAATCAATCATGTGCCAAAACTCATCAATCAACCAAAATGGTTTAAAT
CTGATACTGATATTCGTATTGGAGATGTTGTTTTATTCTTGAAAAGCAGT
CCATTGAAACTCACTTACCAGTATGGTATGGTTGAAGAGACTATTGTGAG
TAAGGATAACAAAATTCGTCAAGTTAAAGTATGTTATCGAAATCATTCTG
AGAACTGTAACAGAACTACTGTCCGACATGTTCGAGAACTAATTGTTATT
CATTATGTTAATGAGAAGTCAATCATTGAACAATTGAACAATATGGCTGA
TCAATGCTGATTCATCAtagtatatataaaaaaaaaaaaaaaatagaaaa
cacaAACACCTTTCACTTTAGGGTGACTTTTTGCATCTCAGTTGGGGCAG
TGTTAGGCGCACTCGCTCCTAATGACTGCAAAAAGTCATCCCATTTTAAT
CGTATACGTCAATTTATTTAATAcgcaaaaacaattaaaaaaatcaatta
ttgTCTTTTCTTTGTATTATTTATACCTTAGGGATTTATCATAGCATTTC
AAAATAGCATTCAGTTTTTTCTGTGTCAACTCAATTTTTCAGAATCAATT
AGTCTCTGTTGAGAGCATCATGTGAAGAGAAATGTGGACTTAGGAAAAGT
TGCGTTTTGTCTTCAAAGTCAAATCTTAAATCAGAActcaaat Run BLAST on NCBI protein sequence of TCONS_00043174-protein >TCONS_00043174-protein ID=TCONS_00043174-protein|Name=TCONS_00043174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp
YALKSLAKVKGPKKFPDISMVDKSMIILSSNEIKRAEHYYWWKGSVEVRH
FIKAEKYKRFTKDINGILTYTGRILDSNEVQIPTPMTKAMIDLQSTTFCV
PVLDKHSPISYAIVNEAHWDNKVVKHSGVESTWRYVLKRAFIIEGRDIVK
MVRRSCQLCRHIQKKKVEVEMGKMSNASLTIAPAFYNSQVDLAGPFLSYD
SYNKRKTIKIWLVVFVCSTTSTTSIKVMDDYSSPAFFQAFTRFACDAGYP
KSVFVDRGSQILKTYNNAKINFNDTKYKLHFNVDVEFELCPVDGHNYNGK
VERRIREIKQSLTKSYNDQKLSVLQWETVAAEIANCINDLPISLGNYVSD
FESMDLITPNRLKLGRNNERSPVGPYELSNDPKKIVQANSLIYQSWFDSW
LINHVPKLINQPKWFKSDTDIRIGDVVLFLKSSPLKLTYQYGMVEETIVS
KDNKIRQVKVCYRNHSENCNRTTVRHVRELIVIHYVNEKSIIEQLNNMAD
QC Run BLAST on NCBI transcript from alignment at sc0003974:6900..8792 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043174 ID=TCONS_00043174|Name=TCONS_00043174|organism=Clytia hemisphaerica|type=transcript|length=1893bp|location=Sequence derived from alignment at sc0003974:6900..8792 (Clytia hemisphaerica)
atttgagTTCTGATTTAAGATTTGACTTTGAAGACAAAACGCAACTTTTC
CTAAGTCCACATTTCTCTTCACATGATGCTCTCAACAGAGACTAATTGAT
TCTGAAAAATTGAGTTGACACAGAAAAAACTGAATGCTATTTTGAAATGC
TATGATAAATCCCTAAGGTATAAATAATACAAAGAAAAGAcaataattga
tttttttaattgtttttgcgTATTAAATAAATTGACGTATACGATTAAAA
TGGGATGACTTTTTGCAGTCATTAGGAGCGAGTGCGCCTAACACTGCCCC
AACTGAGATGCAAAAAGTCACCCTAAAGTGAAAGGTGTTtgtgttttcta
ttttttttttttttttatatatactaTGATGAATCAGCATTGATCAGCCA
TATTGTTCAATTGTTCAATGATTGACTTCTCATTAACATAATGAATAACA
ATTAGTTCTCGAACATGTCGGACAGTAGTTCTGTTACAGTTCTCAGAATG
ATTTCGATAACATACTTTAACTTGACGAATTTTGTTATCCTTACTCACAA
TAGTCTCTTCAACCATACCATACTGGTAAGTGAGTTTCAATGGACTGCTT
TTCAAGAATAAAACAACATCTCCAATACGAATATCAGTATCAGATTTAAA
CCATTTTGGTTGATTGATGAGTTTTGGCACATGATTGATTAGCCAACTAT
CAAACCAGGATTGATAGATTAACGAGTTGGCTTGGACAATTTTCTTAGGG
TCGTTAGACAGTTCGTATGGACCCACAGGACTACGTTCATTGTTACGCCC
AAGTTTCAGTCTATTTGGGGTTATCAAATCCATTGACTCAAAATCAGAAA
CGTAGTTACCGAGTGAAATTGGAAGATCGTTGATACAATTTGCTATCTCT
GCTGCAACTGTCTCCCATTGGAGAACAGACAACTTTTGATCGTTGTAGCT
TTTCGTAAGTGATTGCTTGATTTCACGAATTCGTCGCTCGACTTTGCCGT
TGTAGTTATGCCCATCGACTGGACACAATTCGAATTCGACGTCGACGTTG
AAGTGTAGCTTGTATTTCGTATCGTTGAAGTTGATTTTCGCGTTGTTGTA
GGTTTTGAGGATTTGTGAACCACGATCGACGAATACTGACTTCGGGTAGC
CAGCGTCGCAGGCGAAACGTGTGAATGCTTGGAAGAATGCTGGGCTGCTG
TAATCGTCCATCACTTTGATTGAGGTTGTCGATGTTGTTGAGCAGACGAA
AACGACTAGCCAAATTTTAATCGTCTTACGTTTGTTGTAGCTGTCGTAAG
ACAGGAATGGTCCTGCCAAATCCACTTGACTGTTGTAGAATGCAGGTGCG
ATGGTGAGTGATGCGTTTGACATCTTCCCCATTTCGACTTCGACTTTCTT
CTTCTGGATATGACGACATAGCTGGCATGATCGACGTACCATCTTCACGA
TGTCTCGTCCTTCAATGATGAATGCTCGTTTGAGTACGTAACGCCAAGTT
GATTCGACTCCACTGTGCTTGACCACTTTGTTGTCCCAGTGAGCTTCGTT
GACGATCGCGTAGGAGATTGGTGAATGCTTGTCAAGGACTGGCACGCAGA
AGGTTGTTGATTGGAGATCGATCATAGCTTTCGTCATTGGTGTGGGGATT
TGAACTTCGTTGCTGTCGAGTATTCGTCCAGTGTAGGTGAGTATGCCGTT
GATATCTTTGGTGAAACGTTTGTACTTCTCAGCTTTGATGAAATGACGAA
CTTCTACTGAACCTTTCCACCAGTAGTAGTGTTCAGCACGTTTGATCTCG
TTACTCGATAGGATGATCATTGATTTGTCGACCATTGAAATGTCGGGGAA
CTTCTTTGGACCTTTAACCTTTGCTAAAGACTTGAGTGCATAG Coding sequence (CDS) from alignment at sc0003974:6900..8792 >TCONS_00043174 ID=TCONS_00043174|Name=TCONS_00043174|organism=Clytia hemisphaerica|type=CDS|length=1509bp|location=Sequence derived from alignment at sc0003974:6900..8792 (Clytia hemisphaerica)
TCAGCATTGATCAGCCATATTGTTCAATTGTTCAATGATTGACTTCTCAT
TAACATAATGAATAACAATTAGTTCTCGAACATGTCGGACAGTAGTTCTG
TTACAGTTCTCAGAATGATTTCGATAACATACTTTAACTTGACGAATTTT
GTTATCCTTACTCACAATAGTCTCTTCAACCATACCATACTGGTAAGTGA
GTTTCAATGGACTGCTTTTCAAGAATAAAACAACATCTCCAATACGAATA
TCAGTATCAGATTTAAACCATTTTGGTTGATTGATGAGTTTTGGCACATG
ATTGATTAGCCAACTATCAAACCAGGATTGATAGATTAACGAGTTGGCTT
GGACAATTTTCTTAGGGTCGTTAGACAGTTCGTATGGACCCACAGGACTA
CGTTCATTGTTACGCCCAAGTTTCAGTCTATTTGGGGTTATCAAATCCAT
TGACTCAAAATCAGAAACGTAGTTACCGAGTGAAATTGGAAGATCGTTGA
TACAATTTGCTATCTCTGCTGCAACTGTCTCCCATTGGAGAACAGACAAC
TTTTGATCGTTGTAGCTTTTCGTAAGTGATTGCTTGATTTCACGAATTCG
TCGCTCGACTTTGCCGTTGTAGTTATGCCCATCGACTGGACACAATTCGA
ATTCGACGTCGACGTTGAAGTGTAGCTTGTATTTCGTATCGTTGAAGTTG
ATTTTCGCGTTGTTGTAGGTTTTGAGGATTTGTGAACCACGATCGACGAA
TACTGACTTCGGGTAGCCAGCGTCGCAGGCGAAACGTGTGAATGCTTGGA
AGAATGCTGGGCTGCTGTAATCGTCCATCACTTTGATTGAGGTTGTCGAT
GTTGTTGAGCAGACGAAAACGACTAGCCAAATTTTAATCGTCTTACGTTT
GTTGTAGCTGTCGTAAGACAGGAATGGTCCTGCCAAATCCACTTGACTGT
TGTAGAATGCAGGTGCGATGGTGAGTGATGCGTTTGACATCTTCCCCATT
TCGACTTCGACTTTCTTCTTCTGGATATGACGACATAGCTGGCATGATCG
ACGTACCATCTTCACGATGTCTCGTCCTTCAATGATGAATGCTCGTTTGA
GTACGTAACGCCAAGTTGATTCGACTCCACTGTGCTTGACCACTTTGTTG
TCCCAGTGAGCTTCGTTGACGATCGCGTAGGAGATTGGTGAATGCTTGTC
AAGGACTGGCACGCAGAAGGTTGTTGATTGGAGATCGATCATAGCTTTCG
TCATTGGTGTGGGGATTTGAACTTCGTTGCTGTCGAGTATTCGTCCAGTG
TAGGTGAGTATGCCGTTGATATCTTTGGTGAAACGTTTGTACTTCTCAGC
TTTGATGAAATGACGAACTTCTACTGAACCTTTCCACCAGTAGTAGTGTT
CAGCACGTTTGATCTCGTTACTCGATAGGATGATCATTGATTTGTCGACC
ATTGAAATGTCGGGGAACTTCTTTGGACCTTTAACCTTTGCTAAAGACTT
GAGTGCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043174-exon-sc0003974-1491911889:6900..8792 | TCONS_00043174-exon-sc0003974-1491911889:6900..8792 | Clytia hemisphaerica | exon |
| TCONS_00043174-exon-sc0003974-1510915933:6900..8792 | TCONS_00043174-exon-sc0003974-1510915933:6900..8792 | Clytia hemisphaerica | exon |
| TCONS_00043174-exon-sc0003974-1575043694:6900..8792 | TCONS_00043174-exon-sc0003974-1575043694:6900..8792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003974 | supercontig | sc0003974:6900..8792 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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