TCONS_00043157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043157
Unique NameTCONS_00043157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1169

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043157 ID=TCONS_00043157|Name=TCONS_00043157|organism=Clytia hemisphaerica|type=transcript|length=1169bp
ttaaaaacgACTTTGAGTTGTTCGGTTGTAACCCCCGGTTTTCATTTTCG
TCTATAAATTCATAACATTGGAAAAAATAAGTCTTTCAAAATTCTGGTTG
ATGAAAGCAGGAAGCAAGCCAAACCAAGACCAAGTTGTAGGAAGAAGACT
GAAGCAAGACCTGATTTCTCCCCTAAGCCTTTGTCACAACGTTCGACAAT
GTGTTGGTGAACATGGATAAAATCATTGTCATTGTTCtgcaataaatttt
attttgtaagtatgtatttttcatcaaatttcttttgtattcaacACAAT
TAAAATCAGAGAGTATCCTAATTAGTTTAACTAATAAGAGCATTACAAAC
TGAATTCGTACTAGNtggagtttttgaaaaaatgcccatttttccagtat
atacttgaaaatgataaattggaatacttgaaaatacttgaatttctttt
ttcaatgaaatcttCCATTTCCAGGGCTCTTACAGGCTGTTTTGAAgtat
aaattttccaaaattttctattcggacccaaccatggtgggtcctccTGA
TAACAATGTATTGTANCCTGATAACAATGTATTGTACCCTATTTGTAAGG
TTGGACATTCTTGGTTGGTCTTATTCACTTAACCTATTTGATAtggcttt
tttaaaaaagatgaaCCTTAAATGgcatacaaaaaatgaaaaaaagtaaa
agcagaATCTTAGATATTCTTCAGCTCAAGTTATTTACTGCAAGATAACC
CTcattgagaatttcaaaaatctagcNACTGCAAGATAACCCTcattgag
aatttcaaaaatctagccTTTGGagcattaaaaaaaagaaaaaagtaaaa
gcagAATCTTAGATATTCTTCAGCTCAAGTTATTTACTGCAAGAAAACCC
TcattgagaatttcaaaaatctagccTTTGGAAAATGTATTGAAAGAATA
TAAGTAGGCTTTGTTCACATGAGAGCAGACTCAAATGGCTTTCGTGGGAA
GCTGCTTCCAAGATAACATCAATAGAATGGATAAGGTAGCACGCCTCGCT
GGTCTTGATAATCTTGTCGAAGGCATTAGAAGTTGATTCATTGATATCTA
AACAAAATAAGAGAAGACCCAATTAAACGGAATGTACAAAAAGGTAAAAG
TAACAAAGTAAGAGGCAAC
Run BLAST on NCBI

transcript from alignment at sc0003964:1501..5278+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043157 ID=TCONS_00043157|Name=TCONS_00043157|organism=Clytia hemisphaerica|type=transcript|length=3778bp|location=Sequence derived from alignment at sc0003964:1501..5278+ (Clytia hemisphaerica)
ttaaaaacgACTTTGAGTTGTTCGGTTGTAACCCCCGGTTTTCATTTTCG
TCTATAAATTCATAACATTGGAAAAAATAAGTCTTTCAAAATTCTGGTTG
ATGAAAGCAGGAAGCAAGCCAAACCAAGACCAAGTTGTAGGAAGAAGACT
GAAGCAAGACCTGATTTCTCCCCTAAGCCTTTGTAAGTACTAAATTTAGC
TACTTTTCAGAGTTTAGCTGGAATAGTTTTTCTGAGACTCTTTCTGTCTT
TCACATGATGCTTTCTTTGGCACTTTTTCAGCAGTCTGCACTTTTTTCTG
AGAGATGCCTCTGGCAATTTCACATTAATGCCTTTTCAGGGGACTGTGAC
TAGATATTTTCTTTCTATGATTGTTGTTTCTAGTGAATGTATTGCAACAA
AAAATACTGTATTTCTAAAATTCTAAAGAAACAGACCTAGGCTAGACATG
TTTTACGAGACTTTTGTAAAgtttattcaaattaaaaataaatagatATA
GAAATAGGTTCAATGGAAACTTGAATAGCCGTCctttattgggggggggg
gttgtacttttacggtgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNactgatgatccgcggcactatcgtgaagctagaattgcttcgcgtact
cttcgcttgagaaaatgattgacagattgaagtttttcatccgcgcagga
gttcgcggagcattctcggctcaattcccggaccgcgctaaaaatggtag
actgagcttgatagatcatttcgatggaagttgttggaatgtttacaagg
ctcttgacagaaaattgtttgttttattgtcaatgatgacagtgcggtta
ttaattttgttagatctaacaaattgatttttgtacagtaagtgcacttt
atagttttgattcccattgaagaatcatattctggttttcatgttattag
atgctgttttggagctttaggtctacactgcccCCTTTATATGCACTTGA
TATGTTGCATTCAGGATGTGATTTTCAGcagttttctaacatttttgtaG
AAATTCCATGCAGTCCAATCAAGGCTAAGAAGGGAACAACTAAACTAGGA
ActaaaccttgaaaaaaaaatttttttccttccaACCTACCCATCTTCAA
AATCTAGGGTTTGGGGattgacaaaccaacctttttaagtccagcctggt
CCATTTGTTATGAAAGGGTTGTGctccatatattttttcaaaattcacag
AGCAGCACAAAGAAGTATGAAATCTATATACAGTATTGCATCAAATTGTC
TCTTGAAAATTGTAATTAAAACAAATTAGCTAAACTAAAGTGAgaatgaa
ttaaatttttggttgttttggttttttcatAATGATANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTAGCTTTTTTACAGCTGGGATTAGATAATTCTTTAATT
CAAGCTGGTGTGTAAATATGCTTTACTCTTCCTCACCTCAGGTCACAACG
TTCGACAATGTGTTGGTGAACATGGATAAAATCATTGTCATTGTTCtgca
ataaattttattttgtaagtatgtatttttcatcaaatttcttttgtatt
caacACAATTAAAATCAGAGAGTATCCTAATTAGTTTAACTAATAAGAGC
ATTACAAACTGAATTCGTACTAGNtggagtttttgaaaaaatgcccattt
ttccagtatatacttgaaaatgataaattggaatacttgaaaatacttga
atttcttttttcaatgaaatcttCCATTTCCAGGGCTCTTACAGGCTGTT
TTGAAgtataaattttccaaaattttctattcggacccaaccatggtggg
tcctccTGATAACAATGTATTGTANCCTGATAACAATGTATTGTACCCTA
TTTGTAAGGTTGGACATTCTTGGTTGGTCTTATTCACTTAACCTATTTGA
TAtggcttttttaaaaaagatgaaCCTTAAATGgcatacaaaaaatgaaa
aaaagtaaaagcagaATCTTAGATATTCTTCAGCTCAAGTTATTTACTGC
AAGATAACCCTcattgagaatttcaaaaatctagcNACTGCAAGATAACC
CTcattgagaatttcaaaaatctagccTTTGGagcattaaaaaaaagaaa
aaagtaaaagcagAATCTTAGATATTCTTCAGCTCAAGTTATTTACTGCA
AGAAAACCCTcattgagaatttcaaaaatctagccTTTGGAAAATGTATT
GAAAGAATATAAGTAGGCTTTGTTCACATGAGAGCAGACTCAAATGGCTT
TCGTGGGAAGCTGCTTCCAAGATAACATCAATAGAATGGATAAGGTAGCA
CGCCTCGCTGGTCTTGATAATCTTGTCGAAGGCATTAGAAGTTGATTCAT
TGATATCTAAACAAAATAAGAGAAGACCCAATTAAACGGAATGTACAAAA
AGGTAAAAGTAACAAAGTAAGAGGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026879XLOC_026879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043157-exon-sc0003964-1491911889:1501..1682TCONS_00043157-exon-sc0003964-1491911889:1501..1682Clytia hemisphaericaexon
TCONS_00043157-exon-sc0003964-1510915933:1501..1682TCONS_00043157-exon-sc0003964-1510915933:1501..1682Clytia hemisphaericaexon
TCONS_00043157-exon-sc0003964-1575043694:1501..1682TCONS_00043157-exon-sc0003964-1575043694:1501..1682Clytia hemisphaericaexon
TCONS_00043157-exon-sc0003964-1491911889:4292..5278TCONS_00043157-exon-sc0003964-1491911889:4292..5278Clytia hemisphaericaexon
TCONS_00043157-exon-sc0003964-1510915933:4292..5278TCONS_00043157-exon-sc0003964-1510915933:4292..5278Clytia hemisphaericaexon
TCONS_00043157-exon-sc0003964-1575043694:4292..5278TCONS_00043157-exon-sc0003964-1575043694:4292..5278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003964supercontigsc0003964:1501..5278 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.82513	2.24536	2.32082	3.57161	9.1386	7.47712	4.0665	5.041	4.3036	5.86739	4.57495	4.15823	3.5024	2.84925	2.48316	2.29754	4.67926	2.71929	3.11836	2.57885	3.98729	3.86396	1.38403	2.54303	3.24684	4.46227	5.04654	2.40112	2.88368	2.17256
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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