TCONS_00043147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043147
Unique NameTCONS_00043147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043147 ID=TCONS_00043147|Name=TCONS_00043147|organism=Clytia hemisphaerica|type=transcript|length=737bp
CCCCAATCAATATGAGGAAAATTAAAGGTCCCAAAACACTACCTTGAGGG
ACTCCTGAAATGACTTGTTGTGATTCAGAAGTGACACCATTCACTAGCAC
TGATTGTTTTCTCTCTGTTAGGAAGGACTTTAGCCACTGTAATAATTTTC
CATCTATTcctagtttctttatttttcgtagGACAATTGAATGGTCTACT
TtgtcaaaagcctttgaaaaatctaggtAAACAACATCCGCATTAGCATC
TTTGTCCAATATATTTAGTATCAGGTCATATTGTTCCAAAATCTGACTCA
AACATGAACGCCCGCTTCTGAATCCATGTTGATTGGGATTGAACAGATTA
TTTTCATCCATGTGCTTTACAATATGTGCTCTGAGTAGTTTTTCAAATAT
CTTGATGACATGCGATGTTAGGGCTACTGGTCTATAATTTGATGCAAGTG
ATCTGCTACTGTACCTCCTTTGTAGATTGGTGTGATTGTACATCTTTTAA
GTTCGTCTGGGACAATCCCTTTGTCCAAACTTTGTCTCCAGGGGATACAA
AGAGTAATAGAAAGTTCTTCTTTGCATTGTTTGAGAAAGGTTGCAGGGAA
ACCATCCGGACCTGGTGCTGCAGTTTGGGACAGATCGTTGATTGCTNGAT
GTTAGGGCTACTGGTCTATAATTTGATGCCAGTGATCTGCTACCTCCTTT
GTAGATTGGTGTGATTGTGCATCTTTTAAGTTCGTCT
Run BLAST on NCBI

protein sequence of TCONS_00043147-protein

>TCONS_00043147-protein ID=TCONS_00043147-protein|Name=TCONS_00043147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MYNHTNLQRRYSSRSLASNYRPVALTSHVIKIFEKLLRAHIVKHMDENNL
FNPNQHGFRSGRSCLSQILEQYDLILNILDKDANADVVYLDFSKAFDKVD
HSIVLRKIKKLGIDGKLLQWLKSFLTERKQSVLVNGVTSESQQVISGVPQ
GSVLGPLIFLILIG
Run BLAST on NCBI

transcript from alignment at sc0003956:6475..7211

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043147 ID=TCONS_00043147|Name=TCONS_00043147|organism=Clytia hemisphaerica|type=transcript|length=737bp|location=Sequence derived from alignment at sc0003956:6475..7211 (Clytia hemisphaerica)
AGACGAACTTAAAAGATGCACAATCACACCAATCTACAAAGGAGGTAGCA
GATCACTGGCATCAAATTATAGACCAGTAGCCCTAACATCNAGCAATCAA
CGATCTGTCCCAAACTGCAGCACCAGGTCCGGATGGTTTCCCTGCAACCT
TTCTCAAACAATGCAAAGAAGAACTTTCTATTACTCTTTGTATCCCCTGG
AGACAAAGTTTGGACAAAGGGATTGTCCCAGACGAACTTAAAAGATGTAC
AATCACACCAATCTACAAAGGAGGTACAGTAGCAGATCACTTGCATCAAA
TTATAGACCAGTAGCCCTAACATCGCATGTCATCAAGATATTTGAAAAAC
TACTCAGAGCACATATTGTAAAGCACATGGATGAAAATAATCTGTTCAAT
CCCAATCAACATGGATTCAGAAGCGGGCGTTCATGTTTGAGTCAGATTTT
GGAACAATATGACCTGATACTAAATATATTGGACAAAGATGCTAATGCGG
ATGTTGTTTacctagatttttcaaaggcttttgacaAAGTAGACCATTCA
ATTGTCctacgaaaaataaagaaactaggAATAGATGGAAAATTATTACA
GTGGCTAAAGTCCTTCCTAACAGAGAGAAAACAATCAGTGCTAGTGAATG
GTGTCACTTCTGAATCACAACAAGTCATTTCAGGAGTCCCTCAAGGTAGT
GTTTTGGGACCTTTAATTTTCCTCATATTGATTGGGG

Coding sequence (CDS) from alignment at sc0003956:6475..7211

>TCONS_00043147 ID=TCONS_00043147|Name=TCONS_00043147|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0003956:6475..7211 (Clytia hemisphaerica)
ATGTACAATCACACCAATCTACAAAGGAGGTACAGTAGCAGATCACTTGC
ATCAAATTATAGACCAGTAGCCCTAACATCGCATGTCATCAAGATATTTG
AAAAACTACTCAGAGCACATATTGTAAAGCACATGGATGAAAATAATCTG
TTCAATCCCAATCAACATGGATTCAGAAGCGGGCGTTCATGTTTGAGTCA
GATTTTGGAACAATATGACCTGATACTAAATATATTGGACAAAGATGCTA
ATGCGGATGTTGTTTacctagatttttcaaaggcttttgacaAAGTAGAC
CATTCAATTGTCctacgaaaaataaagaaactaggAATAGATGGAAAATT
ATTACAGTGGCTAAAGTCCTTCCTAACAGAGAGAAAACAATCAGTGCTAG
TGAATGGTGTCACTTCTGAATCACAACAAGTCATTTCAGGAGTCCCTCAA
GGTAGTGTTTTGGGACCTTTAATTTTCCTCATATTGATTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026870XLOC_026870Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043147-proteinTCONS_00043147-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043147-exon-sc0003956-1491911889:6475..7211TCONS_00043147-exon-sc0003956-1491911889:6475..7211Clytia hemisphaericaexon
TCONS_00043147-exon-sc0003956-1510915933:6475..7211TCONS_00043147-exon-sc0003956-1510915933:6475..7211Clytia hemisphaericaexon
TCONS_00043147-exon-sc0003956-1575043694:6475..7211TCONS_00043147-exon-sc0003956-1575043694:6475..7211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003956supercontigsc0003956:6475..7211 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.5936	2.56716	3.39527	3.48045	6.07113	4.97435	5.08071	5.72394	1.65093	1.98144	1.8717	1.95384	1.81186	2.26566	0.991268	1.27655	2.46167	2.1065	1.0553	1.97253	2.57637	2.3157	0.575408	1.0034	2.88098	3.27235	1.53358	0.77873	0.772549	1.17376
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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