TCONS_00043147-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043147-protein
Unique NameTCONS_00043147-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length164

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043147-protein ID=TCONS_00043147-protein|Name=TCONS_00043147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MYNHTNLQRRYSSRSLASNYRPVALTSHVIKIFEKLLRAHIVKHMDENNL
FNPNQHGFRSGRSCLSQILEQYDLILNILDKDANADVVYLDFSKAFDKVD
HSIVLRKIKKLGIDGKLLQWLKSFLTERKQSVLVNGVTSESQQVISGVPQ
GSVLGPLIFLILIG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026870XLOC_026870Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043147TCONS_00043147Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 18..163
e-value: 7.1E-31
score: 107.4
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..164
score: 15.005
NoneNo IPR availableGENE3D3.30.70.270coord: 14..164
e-value: 1.9E-16
score: 59.7
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 12..163
e-value: 4.90305E-32
score: 114.311
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 18..159

Blast
[Close]
BLAST of TCONS_00043147-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.350e-16
Identity = 46/146 (31.51%), Postives = 82/146 (56.16%), Query Frame = 0 
Query:   19 NYRPVALTSHVIKIFEKLLRAHIVKHMDENNLFNPNQHGFRSGRSCLSQILEQYDLILNI-LDKDANADVVYLDFSKAFDKVDHSIVLRKIKKLGIDGKLLQWLKSFLTERKQSVLVNGVTSESQQVISGVPQGSVLGPLIFLILI 163
            N+RP++L +   KI  K+L   I +H+ +  L + +Q GF  G      I +  ++I +I   KD N  ++ +D  KAFDK+    +L+ + KLGIDG  L+ +++   +   ++++NG   E+  + +G  QG  L PL+F I++
Sbjct:  529 NFRPISLMNIDAKILNKILANRIQQHIKK--LIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVL 672
The following BLAST results are available for this feature:
BLAST of TCONS_00043147-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF23.350e-1631.51LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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