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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043138 ID=TCONS_00043138|Name=TCONS_00043138|organism=Clytia hemisphaerica|type=transcript|length=1389bp
CTGGCTTGGACTGACtggaaattgttttttaaattccaTTACTGGATAAC
CCTTTTCTTTGCTCCTCTCATTGCTCTACTTTACGATAATATCTCACAAA
ACACAAATCCATGGCTACTTCCTCCTCTGAAACTGAAATTGGCCTTGGTC
AAAAGCGTAAGTCCACTTCAATATTGCTGTTGTCAGGTCTCGGTCAGAAG
TGTAGTCGTGGAACTGGTACTTGTGATAAGTGTTCTAAACAATACACTAA
TCGTTCTAAGCCCAAATTTTGCCAATGTGGAGCTCATCTTGGTGGAATGT
TTGTTGctaaaccaaaaaaaaacagaaccaGAGCCTGAGCTTGTGGAAAT
AGTTAACATTTCATCTGTTGGCACATTTATGTCTGCAAAGGTGTCAGTGG
CTGGAGACCGTGCTTTTTGTTTTATATCCACAGACAACTTATCTGTCTGC
CACAGCAAAACCTGCCTCAAGTTAAGGTCAAGCTATGTTTCTTCCAACAA
AGTAGAGGAATTTACCTGTGAACATTTACGCAAAATGCCAGCAAGACAAC
CAGTAAAAGTGTTtcacaaatttgatgaaatagaCATCAATATGATAAAT
TTCTCTTTGGATATCAAGAATAAGATCAAAGAATTGCAAACCTCTATGGA
AGTCTACCCATCTGTAGTTCAAATAAGTAGCAAAGCCTATGCAGTCAAAA
CTATGGAGAACAAAACTTCTTGCCCAATGAAGTATGTTCATGTCatgata
aaaaataacaagaagACCAATAAGAATATGGTGAAGTGCACCCAGCGAAg
ctgtaataaaaaaattacaaagacaAAACaggtatcatttttaatttttt
ttcaaaccaatTTTAGTTTAGACTAGATGGATAGGCCATTCTTTAAAAAT
TgcttggttcccgtcatctcaACTTTTAAAAAGTGGGTCGGACGGtcgat
aaaaaaaatgtgttcaAAAGATATGAAGAGGGGAGTCGGGCGGGATTAAA
AAATGAGCGTTTATGTCCTCTTCCGCCATCTTGTTgaacctacctggagg
tcctataaattaacctgtgtttgtttgtttgttcgcCTGTTACCTTTTCT
GTTAACTTTTCGCAGGATTGAATCTAGGAATCTTTTCAGTTTTGGTACGA
ATGTGCGAAATGGCGGtgggcaaaatgtgacggagctcaattttcaaaaa
aaattttttggcaaatttgggccaaaaacctgctaaaaatagggttttat
gcactttgtgaaaaattagatcaaaaaacgcatgtttgtcaataagaatc
actattaataagcatacatcaaagTTCTTAGCCaattagtcaattttttt
tatgagatagatgttgtTTTGCTGATGAttgcttacttt Run BLAST on NCBI transcript from alignment at sc0003951:7490..8878- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043138 ID=TCONS_00043138|Name=TCONS_00043138|organism=Clytia hemisphaerica|type=transcript|length=1389bp|location=Sequence derived from alignment at sc0003951:7490..8878- (Clytia hemisphaerica)
CTGGCTTGGACTGACTGGAAATTGTTTTTTAAATTCCATTACTGGATAAC
CCTTTTCTTTGCTCCTCTCATTGCTCTACTTTACGATAATATCTCACAAA
ACACAAATCCATGGCTACTTCCTCCTCTGAAACTGAAATTGGCCTTGGTC
AAAAGCGTAAGTCCACTTCAATATTGCTGTTGTCAGGTCTCGGTCAGAAG
TGTAGTCGTGGAACTGGTACTTGTGATAAGTGTTCTAAACAATACACTAA
TCGTTCTAAGCCCAAATTTTGCCAATGTGGAGCTCATCTTGGTGGAATGT
TTGTTGCTAAACCAAAAAAAAACAGAACCAGAGCCTGAGCTTGTGGAAAT
AGTTAACATTTCATCTGTTGGCACATTTATGTCTGCAAAGGTGTCAGTGG
CTGGAGACCGTGCTTTTTGTTTTATATCCACAGACAACTTATCTGTCTGC
CACAGCAAAACCTGCCTCAAGTTAAGGTCAAGCTATGTTTCTTCCAACAA
AGTAGAGGAATTTACCTGTGAACATTTACGCAAAATGCCAGCAAGACAAC
CAGTAAAAGTGTTTCACAAATTTGATGAAATAGACATCAATATGATAAAT
TTCTCTTTGGATATCAAGAATAAGATCAAAGAATTGCAAACCTCTATGGA
AGTCTACCCATCTGTAGTTCAAATAAGTAGCAAAGCCTATGCAGTCAAAA
CTATGGAGAACAAAACTTCTTGCCCAATGAAGTATGTTCATGTCATGATA
AAAAATAACAAGAAGACCAATAAGAATATGGTGAAGTGCACCCAGCGAAG
CTGTAATAAAAAAATTACAAAGACAAAACAGGTATCATTTTTAATTTTTT
TTCAAACCAATTTTAGTTTAGACTAGATGGATAGGCCATTCTTTAAAAAT
TGCTTGGTTCCCGTCATCTCAACTTTTAAAAAGTGGGTCGGACGGTCGAT
AAAAAAAATGTGTTCAAAAGATATGAAGAGGGGAGTCGGGCGGGATTAAA
AAATGAGCGTTTATGTCCTCTTCCGCCATCTTGTTGAACCTACCTGGAGG
TCCTATAAATTAACCTGTGTTTGTTTGTTTGTTCGCCTGTTACCTTTTCT
GTTAACTTTTCGCAGGATTGAATCTAGGAATCTTTTCAGTTTTGGTACGA
ATGTGCGAAATGGCGGTGGGCAAAATGTGACGGAGCTCAATTTTCAAAAA
AAATTTTTTGGCAAATTTGGGCCAAAAACCTGCTAAAAATAGGGTTTTAT
GCACTTTGTGAAAAATTAGATCAAAAAACGCATGTTTGTCAATAAGAATC
ACTATTAATAAGCATACATCAAAGTTCTTAGCCAATTAGTCAATTTTTTT
TATGAGATAGATGTTGTTTTGCTGATGATTGCTTACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043138-exon-sc0003951-1575043694:7490..8878 | TCONS_00043138-exon-sc0003951-1575043694:7490..8878 | Clytia hemisphaerica | exon |
| TCONS_00043138-exon-sc0003951-1510915933:7490..8878 | TCONS_00043138-exon-sc0003951-1510915933:7490..8878 | Clytia hemisphaerica | exon |
| TCONS_00043138-exon-sc0003951-1491911889:7490..8878 | TCONS_00043138-exon-sc0003951-1491911889:7490..8878 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003951 | supercontig | sc0003951:7490..8878 - |
Blast
The following BLAST results are available for this feature:
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