TCONS_00043135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043135
Unique NameTCONS_00043135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length908

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043135 ID=TCONS_00043135|Name=TCONS_00043135|organism=Clytia hemisphaerica|type=transcript|length=908bp
NTTGAAAGTAAAATGGAATCTCTACTGAGCAGATTAGATACGTCAGCTCA
TCCAACCTATGGAGAATTGCAATATATTGTTGAGTTACTCTACAATGGTT
ATTATGGTTTTGAAGCCCTTACCAAAAGAGATTTGAATGATGTTATTTGT
GGACTTTGTGGAATTGCAGGGAAGATTTATTATGGTGatggaaaggaaaa
aaaagttgTACTATGATGAATATCAATATCAAGGAAAGCTCAAAAAATGC
CCCAACTCAAGAAACCCAGGTCCAGGATATTGAGGAGGATGCTGTATCAG
AGAATGATGAAAGTAAACTTGATTTGTGTTTGGATCGCATTGAAAATCAA
CTGATAGAGAGGTGTATTTATgtttcaaaaagaaatgaaacaCTTACAAT
GAATATTGAGGATGTCCCCCTTCTTATACCATCATTACAAAGGAAGCAGG
AACTGAATACAGAGATGAAAAAAAAGCTGCTATCTGAAAGATACTGATAA
AATTGANAGCAGCTGGAATTTGACAAACTTGTGAAGCCATGTAGCTATGA
TTGTATTTTTCTAGGACTATTCAATGTGTGTAACAAGATAATCATTTCAT
TGGATATATTAAATGAATGGAGAAGTGAATTCAAGCGAGGGTTGAAAGTA
AAATGGAATCTCTACTGAGCAGATTAGATACGTCAGCTCATCCAACCTAT
GGAGAATTGCAATATATTGTTGACTTACTCTACAATGGTTATTATGGTTT
TGAAGCCCTTACCAAAAGAGATTTGAATGGTGTTATTTGTGGACTTAGTG
GAATTGCAGGGAAGATTTATTATGGTgatggaaatgaaaaaaattgttgt
aCTATGATGAATatcaATATCAAGGAAAGCTCAAAAAATGCCCCAACTCA
AGAAACCC
Run BLAST on NCBI

transcript from alignment at sc0003951:2918..5562-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043135 ID=TCONS_00043135|Name=TCONS_00043135|organism=Clytia hemisphaerica|type=transcript|length=2645bp|location=Sequence derived from alignment at sc0003951:2918..5562- (Clytia hemisphaerica)
NTTGAAAGTAAAATGGAATCTCTACTGAGCAGATTAGATACGGTATTTCA
ATATTTCAAGAAATTCAATTCTGGAAATAGTAAATGTTTGTTTTGAATTA
CCCAAGTAAGCTCTCAGCATTCTCTCCTATCACTTGTTCTGCTCCTACAC
AAACCACAAAAAATGTAAAGAAAATGTAGAAGCAGGAATCAAGAGCCACC
CAGTCTGATCCAGTAAAGTGCCAAGAAAATTGAAAAGGTTCAGGCTGAAA
AAAAAGAAATTAAGTGTCTGAGAGTTTCTCTTCTTATATTTTCCAGTCAG
CTCATCCAACCTATGGTAACCTGATAACAGATGTTTGTAATTTTCTTACG
CGCACGGTAAACCTCTGAAGGCGCTTGAAAATTGTTTTCACACATCCCTT
TAGAGCTTCAGCGTGGTGTGCAGAAAACATTCACAATCTGATCTCAGGTT
AACCTATGGAGAATTGCAATATATTGTNCTGCTAAGAAAATTGAAAAGTT
TCAGGCTGAAAAAAAGAAATCAAGTGTCTGAGAGTTTCTCTTCTTATATT
TTCCAGTCAGCTCATCCAACCTATGGAGAATTGCAATATATTGTTGAGTT
ACTCTACAATGGTTATTATGGTTTTGAAGCCCTTACCAAAAGAGATTTGA
ATGATGTTATTTGTGGACTTTGTGGAATTGCAGGGAAGATTTATTATGGT
GATGGAAAGGAAAAAAAAGTTGTACTATGATGAATGTAAGTAGAATTAAT
TAGGTTCTAAAAAATCTAAGTTATTAAATTTTGTGTTCCTGGTTTCACAT
CAGATATGTCTGCCCTTTTGTTACCTATGTTATCAACTAAAAAAAGTGAA
AATATTGAAATATTGATTCTAGAGCAAAAAACCTTCCTGTTGCTCAAAAG
TAAATTTAGAAGGAGGAAAGGATTTTTGAGAACAATCAGAAAGAGAGGAG
TTCTTTCCTTTGTAACCTAGTTGATTAAGCAAGCATAAAAAGAAATAAAG
GCCTGTTCTATGGATCACTCCATTGTACATCTTTCGATTTTTTCAATTCC
CTGAACTTTATTTTTGACCTATTTCTGCAGTCTTAATAATACACTCCTAA
CAATACTATACCGCTTCTGTTTTAAAGAAGGGGAAATCATTGCTGTCTAT
TATTAGGAAAGTATGTATCCAAGAGGGAAGTATTTTTAATTTTTAGATCA
ATATCAAAGAAAGCTAAAAAAATGCCCCAACTCAAGAAATNAATTTTTAG
ATCAATATCAAGGAAAGCTCAAAAAATGCCCCAACTCAAGAAACCCAGGT
CCAGGATATTGAGGAGGATGCTGTATCAGAGAATGATGAAAGTAAACTTG
ATTTGTGTTTGGATCGCATTGAAAATCAACTGATAGAGAGGTGTATTTAT
GTTTCAAAAAGAAATGAAACACTTACAATGAATATTGAGGATGTCCCCCT
TCTTATACCATCATTACAAAGGAAGCAGGAACTGAATACAGAGATGAAAA
AAAAGCTGCTATCTGAAAGATACTGATAAAATTGANAGCAGCTGGAATTT
GACAAACTTGTGAAGCCATGTAGCTATGATTGTATTTTTCTAGGACTATT
CAATGTGTGTAACAAGATAATCATTTCATTGGATATATTAAATGAATGGA
GAAGTGAATTCAAGCGAGGGTTGAAAGTAAAATGGAATCTCTACTGAGCA
GATTAGATACGGTATTTCAATATTTCAAGAAATTCAATTCTGGAAATAGT
TAATGTTTGTTTTGAATTACCCAAGTAAGCTCCCAGTATTCTCTCCTATC
ACTTGTTTTGCTCCTACACAAACCACAAAAAAATATAAAGAAAATGTAGA
AGCAGGAATCAAGAGCCACCCAGTCTGACCCAGTAAAGTGCTAAGAAAAT
TGAAAAGGTTCAGGCTGAAAAAAAGAAATCAAGTGTCTGAGAGTTTCTCT
TCTTATATTTTCCAGTCAGCTCATCCAACCTATGGAGAATTGCAATATAT
TGTTGACTTACTCTACAATGGTTATTATGGTTTTGAAGCCCTTACCAAAA
GAGATTTGAATGGTGTTATTTGTGGACTTAGTGGAATTGCAGGGAAGATT
TATTATGGTGATGGAAATGAAAAAAATTGTTGTACTATGATGAATGTAAG
TAGAATTAATTAGGTTCTAAAAAATCTAAGTTATTAAATTTTGTGTTGCT
GGTTTCACATCAGATATGTCTGCCCTTTTGTTACCTATGTTATCAACTAA
AAAAAGTGAAAATCTTGATTCAAGAGCGCAAAACCTTTCTGTTGCTCAAA
AGTAAATTTAGAAGGAGGAAAGGATTTTTTGAGAACAATCAGAAAGAGAG
CAGTTCTTTCCTTTGTAACCTATTTGATTGAGCAAGCATAAAAAGAAATA
AAGGCCTGTTCTATGGAACACTCCATTGTACATCTTTCGATTTTTTCAAT
TCTCTAAACTTTATTTTTGCCCTACTTCTGCAGTCTTAATAATACACTCC
TAACAATACTCTACAGCTTCTGTTTTATAGAAGGGGAAATCATTGCTGTC
TATCATTAGGAAAGTATGTATCCAAGAGGGAAGTATTTTTAATTTTTAGA
TCAATATCAAGGAAAGCTCAAAAAATGCCCCAACTCAAGAAACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026863XLOC_026863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043135-exon-sc0003951-1575043694:5521..5562TCONS_00043135-exon-sc0003951-1575043694:5521..5562Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1575043694:4828..5006TCONS_00043135-exon-sc0003951-1575043694:4828..5006Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1575043694:3852..4312TCONS_00043135-exon-sc0003951-1575043694:3852..4312Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1575043694:3418..3597TCONS_00043135-exon-sc0003951-1575043694:3418..3597Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1575043694:2918..2963TCONS_00043135-exon-sc0003951-1575043694:2918..2963Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1510915933:5521..5562TCONS_00043135-exon-sc0003951-1510915933:5521..5562Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1510915933:4828..5006TCONS_00043135-exon-sc0003951-1510915933:4828..5006Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1510915933:3852..4312TCONS_00043135-exon-sc0003951-1510915933:3852..4312Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1510915933:3418..3597TCONS_00043135-exon-sc0003951-1510915933:3418..3597Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1510915933:2918..2963TCONS_00043135-exon-sc0003951-1510915933:2918..2963Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1491911889:5521..5562TCONS_00043135-exon-sc0003951-1491911889:5521..5562Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1491911889:4828..5006TCONS_00043135-exon-sc0003951-1491911889:4828..5006Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1491911889:3852..4312TCONS_00043135-exon-sc0003951-1491911889:3852..4312Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1491911889:3418..3597TCONS_00043135-exon-sc0003951-1491911889:3418..3597Clytia hemisphaericaexon
TCONS_00043135-exon-sc0003951-1491911889:2918..2963TCONS_00043135-exon-sc0003951-1491911889:2918..2963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003951supercontigsc0003951:2918..5562 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.14654	1.92044	0	0	0.345147	1.49582	0.890832	0.127562	0.786463	0.38431	0	0	0.0674188	0	0	0	0.321574	0.100215	0.394719	0	0	0	0	0.242425	0	0.125562
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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