TCONS_00043101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043101
Unique NameTCONS_00043101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length763

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043101 ID=TCONS_00043101|Name=TCONS_00043101|organism=Clytia hemisphaerica|type=transcript|length=763bp
TTCTACTGTTGAATAAAGACAACAATATATGTTTGGAGACTAGaGCATTT
CAAACCAAATATCCAACTTATTCCACCAAAAGCTACTGCTAATGTGTTTG
CAGTTTTACCAAATCAGAATCAGAATGAAAGCGAAAACACAACAACTTTC
AATGCACCTTCCCTTTTTTCAAATAATGTACAACAAACAACTGACAATAC
GTCACATCAAGTCAGAAATAATGAACATATGGGTGCTACGCAAAGTCTTT
CCTTTGCAAACATTCCTGGTAGAAATCATGAAGTGACTGTAACCTCAGAC
CAGCCTAGATTTCCTGCACCTGAAGATGCCCAGCATCAGTCTCAAGCACC
AACCATCTTCAGTGCTCCACTGAACAGCTCCAACCTATTATCTTCTGGTC
AACCACCAGAGCAAGATCAACAACAACCACCACATGATGGCGCCTCAAAT
AAGGAAAATAACACCACACAGGATCACACCACACAGGATCACACCAGCGG
ACAAACATATAGTCATGGGATCGGTATTGTTACATCAAACCCTTCATCCC
AGCAACAATATTCTCAAAGCAATTCAGTTCAGCCGCTTGTTTACTCTCAA
ACTTCTTCAAATGTTCAATATACACAACAGAGTCAGGCAACCAATGCTTA
TCAAGTAATGAAATTTGTTCTTTTGACGCAATAAAGGATATGAATGAAGG
CAAATGAATAGCAGTTTTCTGTTATTAATTAATGCAAGGATTGAGCTATT
TTCAACCTGGTGG
Run BLAST on NCBI

transcript from alignment at sc0003916:11688..15980+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043101 ID=TCONS_00043101|Name=TCONS_00043101|organism=Clytia hemisphaerica|type=transcript|length=4293bp|location=Sequence derived from alignment at sc0003916:11688..15980+ (Clytia hemisphaerica)
TTCTACTGTTGAATAAAGACAACAATATATGTTTGGAGACTAGGTACAAG
GATTTCACTTTGTAATTGCTCTGGATTATGGAATCAAAACCATTTATTTT
TTGTCAGGCAACTTTGATATTTATTGATGTTTgatctttcattttgaaaa
gtGAATAATCACTCCTTGTTTGTCTGGGATTGACTGATGAAACTGGATGA
AAGGGTCTTCATCATGGTTCTAAAATCGAGTCTAAAATAGCCTAGCATTA
CTTTTAATGTTTGTATTCTTGGAGGACAATACAGTTTTAATTTAGTACTT
GGATANTTACTTTTAATGTTTGTATTCTTGGAGGACAATACAGTTTTAAT
TTAGTACTTGGATATTCTAAATTCGTCTTTTAGTTCCAACATTGTGTCTA
GATGGAATAAGTCATCCATCCCTGAAAATGTAACCAAAATATTGTACCTA
CTGTTCTGGACTGTTTGATTCTAAGATAACATACTAAAGTACCTGCACCG
ACCCTGGGCACCGACTATAAGATACAAAGCCGACCTTACGGTACCCACTA
TAATATAGACTAGGATCCTAACATCTCCTATAATACAATGAATAACAATA
TCAATAGTTTAAACGTTATATatatatcatttttcaaaaggtttAGGCTT
ACAGACTTTGCGTCCGTCCGCTTCTAGTTGTGTATCTCGTCTCAACACTG
TCCTTTTTGCTTTCTTGTATATCACTCATCTCCATATTGTAAGGTACCGC
TCTGTCCGACTCACCGTCAGAGTCTGTTAAATCATAGGGAATAGTGTCTG
ATTCAGAACCTTCTGAAAGTTCATTTTCCTGGGCATCAGGGTTTGAGGGG
ACCTGGAGAAGAGCTGGGGGCAAGGGGGCCCTTTCTCTAGGTAGGTGACT
AGGTGTTGGCGTGATGACTGCATAAACCTTTCTCACTCAGTTGATTTTGG
TTTCTTCTCAATAATTTGCCATTAACGTTTACAGAGTATGATCTTGGGGC
CACTTGATCTAGGACTATTCCTCTTGCtgacattcttttgttttagcgTC
TTGCATTGCCACTTCACTACCTGTAACAAAAAGTTCTGGTtttgtaattt
gtaatttcatATATCGTGGTAACTTTTTACAGATAATCTTTCTTTGTTAA
GATTCCTCTGAGGCATCTCAGATCTGGGCTTATGAATTTTGGGTAAGTTG
TCTGTCAATTGTCAACCTATAAGAAGTTGTGCTGGTGATAGTCCACATTG
TAAGGGAGAGTTTCTAAGGATAAGTAGCCCGATTAGAATGTCTTGGTTGG
ATCTAACGCACTTTTTAAGCGTTCTCTTGACACTCTTGACCATGGATTCT
GCTAAACTGTTTGATCATAGATAATAGGGGCTACTAGTAACATGTTTAAT
GTTCCATTGTCGTGTAAATTGTCTgaattttctataagaatattggGAGC
TGTTGTCTGATATAAGAGTCTCAGGTACACcatttcaagaaaataattGT
TTCAGTGCATTGGTAACTAAGTCAGATGTTGCCGAAGATAAGATGTAAAC
CTCGGGCCACAATGAATAGTAATCCGCAACAATTAAATAGTTCTTTCCTC
CAAAATGGAATAAATCGCTACCCACTTGTTGCCATGCTCTATCCAGAATG
TCTTGATGCAATAACGGACTCTTTGGTTTGGATGACAGTAATGTTGCACA
AGTTTTACATTGCTTCACGATTGATTCAATGTCCTTACTCATGCCggtcc
agaaaaaaaatataaatactcTGTCTTTCTCGTCGTCTGCACTTTTCTAT
CCCGTTTTGTCCAGTGTGTATTCTAGTCAAAATTTCCGGTTGCAGTTTTT
TCCGTATAACTATTCAGCAACTCCTAACATCAGCAAATTGTTCAATATtg
cagggttcgaattatagcttTGCACTTCGAAATGCgaagtgaattttaga
tttagcgacccaaaaaaatttcccaacTCAAAAATgtgaagttaaaaaat
tataagaaagcGCCTATTTTGCTACCCAcacatttgtttatctattgctt
tatctacctgccacttcgctactttattcattcgctTATCTATTGCTTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCctgccacttcgctactttattcattcgtttatctattgcttta
tcaacttgccacttcgctattttattcattcgtttcTCTATtactttatc
aacttgctacttAGCTACTTtcttcactcgtttatctaatTCTTTATTTA
CTTGCCATTTCGCTACTTTTGTCATACGTTTatatattgctttatctact
tgccacttcgctactttattcattcgcttatttattgttttatcaacttg
ctattttgctattttattcattcgtttatctctTGCTTTGTCTACTTGCC
ACtttgctactttattcactcgatNCttatctattgttttatcaacttgc
tattttgctattttattcattcgtttatctctTGCTTTGTCTACTTGCCA
Ctttgctactttattcactcgattatctattgctttatcaactctctact
ttattcactcgtttatttattgctttatctacttgccactttgcaacttt
cttcattcgtttatctttACTTTATCAACTCACTACTTTAtccactcgtt
tatctattgcctTATCTATTCGTTACTTCGCATTTGTAagcacaaaattt
taaaacttgatTTGAAACAGGGGGTGCACACTTAGTGTACTGGACCAGTG
CCCCTTTGTACCATGGTACTAACTTGCAATTAACGTTCAAAATAGGCGGA
CCACCCAGTTATAGCCTATCTTAAAATCAGATCCTTAACATCAAATACAG
TTATCAAAATGCAGTTACTTATCAAATACAGTTAGAGACCTTGATCTTTC
TGTCGGTAAgtcaataaagagaaaaatacctcataaatggaaaaaataag
gaaaaaataatttgtaaagaattttttcaaaaaagtaccaCCCACCACTA
AGAACCCTGGTACAAAGTGGCATATCACCTACCAATTTGGACCACCCACC
CAGCAGTGGTCCCCACAATAAGAAATACCCTGCATACCAAATTCCCTATT
TTCAGCCACCCCTTCTACCAGCATTGCAACCCaaataaaaaacttgaaaa
gatTGCTTCCCTTTATGATAAGGTGCAGCATCAAATATcataatgaaaaa
tttcaaaattgtgcGAATCTCCCTAGGGGTCTAGAggtctttaaaaattt
tcttatgtACCAGCACCCCTATTTTGAACTTTAAATACTAACTTCTTTGA
GGAAAAAAAGGACCCAAACCCATCTTTAGCAGGTATATTCCTCTACACAG
GAAGAAGGCTATTTAGAAACTGGTTGGTTATCAAGAAAAATATGTTTAAA
TCGCCCTGGGATGACGCCTTGTAATAAATACCTAGAGGTTAATTTCACCT
CACAAAAATGTTCGGGgagctttcaatttttcaaactaAGGTCAATctga
atctttctttttttcttttgcagaGCATTTCAAACCAAATATCCAACTTA
TTCCACCAAAAGCTACTGCTAATGTGTTTGCAGTTTTACCAAATCAGAAT
CAGAATGAAAGCGAAAACACAACAACTTTCAATGCACCTTCCCTTTTTTC
AAATAATGTACAACAAACAACTGACAATACGTCACATCAAGTCAGAAATA
ATGAACATATGGGTGCTACGCAAAGTCTTTCCTTTGCAAACATTCCTGGT
AGAAATCATGAAGTGACTGTAACCTCAGACCAGCCTAGATTTCCTGCACC
TGAAGATGCCCAGCATCAGTCTCAAGCACCAACCATCTTCAGTGCTCCAC
TGAACAGCTCCAACCTATTATCTTCTGGTCAACCACCAGAGCAAGATCAA
CAACAACCACCACATGATGGCGCCTCAAATAAGGAAAATAACACCACACA
GGATCACACCACACAGGATCACACCAGCGGACAAACATATAGTCATGGGA
TCGGTATTGTTACATCAAACCCTTCATCCCAGCAACAATATTCTCAAAGC
AATTCAGTTCAGCCGCTTGTTTACTCTCAAACTTCTTCAAATGTTCAATA
TACACAACAGAGTCAGGCAACCAATGCTTATCAAGTAATGAAATTTGTTC
TTTTGACGCAATAAAGGATATGAATGAAGGCAAATGAATAGCAGTTTTCT
GTTATTAATTAATGCAAGGATTGAGCTATTTTCAACCTGGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026833XLOC_026833Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043101-exon-sc0003916-1491911889:11688..11730TCONS_00043101-exon-sc0003916-1491911889:11688..11730Clytia hemisphaericaexon
TCONS_00043101-exon-sc0003916-1510915933:11688..11730TCONS_00043101-exon-sc0003916-1510915933:11688..11730Clytia hemisphaericaexon
TCONS_00043101-exon-sc0003916-1575043694:11688..11730TCONS_00043101-exon-sc0003916-1575043694:11688..11730Clytia hemisphaericaexon
TCONS_00043101-exon-sc0003916-1491911889:15261..15980TCONS_00043101-exon-sc0003916-1491911889:15261..15980Clytia hemisphaericaexon
TCONS_00043101-exon-sc0003916-1510915933:15261..15980TCONS_00043101-exon-sc0003916-1510915933:15261..15980Clytia hemisphaericaexon
TCONS_00043101-exon-sc0003916-1575043694:15261..15980TCONS_00043101-exon-sc0003916-1575043694:15261..15980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003916supercontigsc0003916:11688..15980 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.769621	0	0	0	8.89875	11.6745	9.55501	12.4383	6.31742	6.25171	7.45201	4.91366	4.65333	4.37195	5.77267	7.06469	9.26015	5.21157	4.41632	2.15755	0.76191	3.17272	2.41867	0.348927	6.50589	1.8442	0.181416	4.44776	1.8889	5.12327e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top