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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043087 ID=TCONS_00043087|Name=TCONS_00043087|organism=Clytia hemisphaerica|type=transcript|length=981bp
tcaaaaattaaaattatcatTACAGGCGATTTAAAGGGCCACAATATTTT
GTGGTGGTCAAAGACTGTCAAAATTAAAACCTACTTTTACCCCGAATTTT
TTCGAggaaacgtgtttcgcgtgtattaaatttcgcgattcactaaattg
ggcattttcaaaaagtgggaataaagcaagaaaatgactgatttcgcttg
aaacacaacgtattGGGTGTAAACATACCGAAAATAGTGGCAAAAATAGA
AACTAGTGTGACAAATAAGTATTTTAAATTTCGgcctatttttaacattt
ttcacgGATATttaatttcgccattttgtatttttgaaaaatttaaacgg
tattaaatttcgcgaaattttgtaactcgcgaaaattaataccaataagg
taggCTAATTTTTAATCGATTATCTATCTTATTTTGGGGTATTCAAGCTT
ATAATTTCGAGCCCCTCGCAATAACAACCCGGTTTTTCTAGCCCTCCTTT
TTAGGCACCTAATAAATCATTTACAATCCTTATTCGTTCCGAAATTTAAA
TCATCGAAATTGCATATATCAATCCATTGTTAAACTCCTTcgattttttg
atttctttctttttgaaacaGGCGATAAAATAGGAGCACTTTCAAGCATT
TCAATACTGGATACAGAAAGTAGCGGCGAGACGGTGATTTTCTCGTTGCC
CGCGCGGACGATTGTTGGCGACTGTTTGACCGTTTCGTTCATAGCACCGA
ATGGCTTTTTGAGAAAGCTCGGAGAAGTATTAGAGTCAGGTGTTTGTTTG
TTTAGTTCTTCGAAAGCTTCTCGGAAACTCAAATTCAGAGATGGCGTTGT
TACATCTTCCGTATTATTTTGATTGTTCCCGTTTTGCTCTATTTCGGACA
GCCAGTCCATGGTATTATCGGACAAGGGTAGCTTTGTTTGGCTACTCGTT
GTGTTATCATCGCTGATGGAGAGTCGAAGTC Run BLAST on NCBI protein sequence of TCONS_00043087-protein >TCONS_00043087-protein ID=TCONS_00043087-protein|Name=TCONS_00043087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
LRLSISDDNTTSSQTKLPLSDNTMDWLSEIEQNGNNQNNTEDVTTPSLNL
SFREAFEELNKQTPDSNTSPSFLKKPFGAMNETVKQSPTIVRAGNEKITV
SPLLSVSSIEMLESAPILSPVSKRKKSKNRRSLTMD Run BLAST on NCBI transcript from alignment at sc0003907:1..981 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043087 ID=TCONS_00043087|Name=TCONS_00043087|organism=Clytia hemisphaerica|type=transcript|length=981bp|location=Sequence derived from alignment at sc0003907:1..981 (Clytia hemisphaerica)
GACTTCGACTCTCCATCAGCGATGATAACACAACGAGTAGCCAAACAAAG
CTACCCTTGTCCGATAATACCATGGACTGGCTGTCCGAAATAGAGCAAAA
CGGGAACAATCAAAATAATACGGAAGATGTAACAACGCCATCTCTGAATT
TGAGTTTCCGAGAAGCTTTCGAAGAACTAAACAAACAAACACCTGACTCT
AATACTTCTCCGAGCTTTCTCAAAAAGCCATTCGGTGCTATGAACGAAAC
GGTCAAACAGTCGCCAACAATCGTCCGCGCGGGCAACGAGAAAATCACCG
TCTCGCCGCTACTTTCTGTATCCAGTATTGAAATGCTTGAAAGTGCTCCT
ATTTTATCGCCtgtttcaaaaagaaagaaatcaaaaaatcgAAGGAGTTT
AACAATGGATTGATATATGCAATTTCGATGATTTAAATTTCGGAACGAAT
AAGGATTGTAAATGATTTATTAGGTGCCTAAAAAGGAGGGCTAGAAAAAC
CGGGTTGTTATTGCGAGGGGCTCGAAATTATAAGCTTGAATACCCCAAAA
TAAGATAGATAATCGATTAAAAATTAGcctaccttattggtattaatttt
cgcgagttacaaaatttcgcgaaatttaataccgtttaaatttttcaaaa
atacaaaatggcgaaattaaATATCcgtgaaaaatgttaaaaataggcCG
AAATTTAAAATACTTATTTGTCACACTAGTTTCTATTTTTGCCACTATTT
TCGGTATGTTTACACCCaatacgttgtgtttcaagcgaaatcagtcattt
tcttgctttattcccactttttgaaaatgcccaatttagtgaatcgcgaa
atttaatacacgcgaaacacgtttccTCGAAAAAATTCGGGGTAAAAGTA
GGTTTTAATTTTGACAGTCTTTGACCACCACAAAATATTGTGGCCCTTTA
AATCGCCTGTAatgataattttaatttttga Coding sequence (CDS) from alignment at sc0003907:1..981 >TCONS_00043087 ID=TCONS_00043087|Name=TCONS_00043087|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0003907:1..981 (Clytia hemisphaerica)
CTTCGACTCTCCATCAGCGATGATAACACAACGAGTAGCCAAACAAAGCT
ACCCTTGTCCGATAATACCATGGACTGGCTGTCCGAAATAGAGCAAAACG
GGAACAATCAAAATAATACGGAAGATGTAACAACGCCATCTCTGAATTTG
AGTTTCCGAGAAGCTTTCGAAGAACTAAACAAACAAACACCTGACTCTAA
TACTTCTCCGAGCTTTCTCAAAAAGCCATTCGGTGCTATGAACGAAACGG
TCAAACAGTCGCCAACAATCGTCCGCGCGGGCAACGAGAAAATCACCGTC
TCGCCGCTACTTTCTGTATCCAGTATTGAAATGCTTGAAAGTGCTCCTAT
TTTATCGCCtgtttcaaaaagaaagaaatcaaaaaatcgAAGGAGTTTAA
CAATGGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043087-exon-sc0003907-1491911889:1..981 | TCONS_00043087-exon-sc0003907-1491911889:1..981 | Clytia hemisphaerica | exon |
| TCONS_00043087-exon-sc0003907-1510915933:1..981 | TCONS_00043087-exon-sc0003907-1510915933:1..981 | Clytia hemisphaerica | exon |
| TCONS_00043087-exon-sc0003907-1575043694:1..981 | TCONS_00043087-exon-sc0003907-1575043694:1..981 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003907 | supercontig | sc0003907:1..981 . |
Blast
The following BLAST results are available for this feature:
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