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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043082 ID=TCONS_00043082|Name=TCONS_00043082|organism=Clytia hemisphaerica|type=transcript|length=470bp
CGAAGGCTTCGAAACAGGGAATCTACACTATGCTGAAATATCTGTAATTA
TCCTGGCGATCTTTAGCAATAACTTACTATATCTTCGACGAGCACCACCA
CACTTGGCATTCAACTGTTCAGTCACCTTAGATTCTTCCAATCCATACTT
GTTCTTGCCCAattctaaaaaatcaaaaccaaatcaGCACCCAGAGACAT
CTTGCTGCTTGGTTGAAAGCCTGAATTGAAACAGGTGCTGAGGCTttgat
tgaagatgaaaatacaaagaagaGATGGAAGTTTATCTGGTCCATTAGCA
CCGTCTtggattcaaaagtataatgGTAGTCACAAATATCAATCAAAATT
ATTGGACTGAACAATTACCTTTTCGTTTTTTGGCAACAGCTGTCACGCAA
GCTTCGTAGTATTTCTTGTGATGTGGATACCAGAAAAAACCACGTCGACC
AACTTTTATCCCTGACATTG Run BLAST on NCBI transcript from alignment at sc0003905:23..7038+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043082 ID=TCONS_00043082|Name=TCONS_00043082|organism=Clytia hemisphaerica|type=transcript|length=7016bp|location=Sequence derived from alignment at sc0003905:23..7038+ (Clytia hemisphaerica)
CGAAGGCTTCGAAACAGGGAATCTACACTATGCTGAAATATCTGTAATTA
TCCTGGCGATCTTTAGCAATAACTTACTATATCTTCGACGAGCACCACCA
CACTTGGCATTCAACTGTTCAGTCACCTTAGATTCTTCCAATCCATACTT
GTTCTTGCCCAattctaaaaaatcaaaaccaaatcaGGTTAGTTATAAAC
TTCTTCATTTCTATTTGTACTGTTTGCGAGAGCAAGGAAAAATCGTTCTT
TGCTGTATGTTTCTCAAAGCTCATAAAGTGTACACTTCAAAAACTTTCAT
ATTAAAAAAGGTGGATAAATTAATTAGAAAAACAGCTTTATAAAGTGTAC
GTAGATTATCCCTTTTCCCCCATGCATGCCTGTATGCGTTACCAAGCATC
CTCTCTCAGAGTTAAGAACTTTCTGGTACTTTTTGAATGATGTCTCCGCA
AATATAAGTTCTTGactgaatatttttaatttttccactATATACCGACA
GAAATCAAATTTcgccaaattcaattttttccctgaatgtatCAAGAAAG
TtaaccttaagggaactttttttggtgagaactaattttgacaaACGACC
GATTCTAACTTTTCtcttttggcgagaacttattttggcaaaccaggaat
tttttgattttggcaagaacttaatttggcaaatgacctaaaaaataatt
tcagtgggaactaaatttggcaaattttgagtTCGCTctccaattttgcc
aaaataagtaTGGTAATATGAAGAAAGATAAAGAAGTCTTATTCTACTTA
CCTAAAAGATCAGCaacaattttttcattcaatgcTGGCTTTGACTTTCT
AGTCTTTTTGTTTTCCTTGCCTTGTGCTGACGACCTTAAAGTTTTAAGTG
GAACATTTagcgctttctttgttttactAATTCCGAAGCTAGAAAATATT
AATAGAGGCATATCGTCTGAAGCcaggtaacaaaaattttctggaatggc
ccaatgtNAAAATGCATATCGTCTGACGCcaggtaacaaaaattttctgg
aatggcccaatgtgaCAAAAAACAAGAATAAATGTTTCCTTGTTTGACTT
GTAACAGAGTTAAACTGGAAGAGtctattttttataaagaaGAAATTGTT
TTCTTACTTCCTCAAAGTTTTCTCGTCAAAGTATTTCTTGACGATGGTAT
TGAAAACCGGTGTCCATTTTTGGTATTTGTCGCTCTTCCTTTTCAACACC
TTTATTTCTGCCACCGTCAACTTAACATGGTTAGTCATTGGGAGTATCAT
TTCTTGCTAAAGGtttgtaaaattatgaaaataaaactgTAGTTAGACTG
AGTGCATGGTTCCGGTAAGTGTTTAAGataccttaaggggattaattttt
gcgggaacttattttcgcgagagatataaaaattaaaatttaacaaATCA
GCCcctttttgaccaaatttctttcattttcgtAGGGGTTCAGGCAAATA
TCATGATCTTAAATTTTTCGCAAGTATTATATTTTGCGAATTTCGCAAAT
CCaaaggttttaaaattttttaatcaaatcaagGTACTTAAGGAGGATCT
AATATTTTCGTGAGAAATAAACTTTTACTGGTACCTACCTGCATATCTGA
ATTGCTAAGATAACCGGTGCTGAcgtctaatgtttttttttgttttctgt
cGGTTGTTATTGGACTACTCTCAAAGTTCATACTTCTGTCCGTCATTACA
GGAGTTGAGTTCATCTATATAGAAAATAACAAAGTTTTCAGTTTCTTATA
TACACATTCAAGTAATTTTTTCTTGCTGCTGGTGCtgtttttaacccttt
aaaaACAGATGTATGTAGGGTTAAAACTCTAATTTTCCACCAATTTAATC
CTAAGTATACTTTGAACTCAGCCATTACAGGCTCCActttaagaattttt
cagccTCGTTGTTTTCGTAAAGAAagtttattttagatattctcACTTTA
TGAAAATTTCTCTCCTAAATTTATCACTTAACCAACTTTAATAGATACAC
TACTCACTTGGTCTGTTCCAGGAAGCACTTCCTCATGCTGGTCAAGGGTC
ATACTCTCAGGAATAATCTATGAGAAAAGGATATTCTTATTCTTACAAGT
CCTTATAAAACTTGCTTTCATTAAAGCTTTTTTCTTGACAGGGTATGAGC
TGAATTTCCTAATTTGATAacggtgttttttttaattattatttacAAGT
GCATTTTAATTGAGTTATTAATAAGATGTGAGTATATAGTGGCAAATTCA
ACTTACTGTGGTTTTTTTGCCATTTGGGAAGGAATGGCTGATTTGTTGCG
TGACTGTCACTAAATCAGGAACTAGCCTGCCCAAATTACTGAAAGTTGAC
TCTAAGAGAAAAGAGGTTATGGTGAACAACAAGGCTGGGTGTTGTGTGGA
GGTATCTAGGGTCTTTAAAGAGTAACATGGTCACATATTTCCCCATGTCC
TATTTATTCACaagctacatgttttttctatATAAATGTTATGTTATGAG
CATAcacaggctcagtttttggtttCCAaacaattttgttttagagCAGA
ATTGGAAAATTTANCGTCATTACAGGAGTTGAGTTCATCTATATAGAAAG
TAACAAAGTTTTCAGTTTCTTATATACACATTCAAGTAATTTTTTCTTGC
TGCTGTTGCtgtttttaaccctttaaaaACAGATGTATGTTGGGTTAAAA
CTCTAATTTTCCACCAATTTAATCCTAAGTTTACTTCAAACTCAGCCATT
ACAGGCTCCACTTActttaagaatttttcagccTCGTTGTTTTCGTAAAG
AAagtttattttagatattctcACTTTATGAAAATTTCTCTCCTAAATTT
ATCACNAGAGCCGCCTAAGAGAGGTTTCTGTGTTACTCACTGATTCTAAC
ATTgtaatgaaataaataaagaaaGACAACAACTTAATCGACTAAGCACT
TATTTATTATGATACTAAATTAACTCGAAAGTCTCACGCAGCCTCAATTA
GAAATATATCTCACCTTCTTTATTTCCAGCACCCAGAGACATCTTGCTGC
TTGGTTGAAAGCCTGAATTGAAACAGGTAGGACAATTTTTATAACTAtgg
ttttttttgcttttatgtTCAGGGACctaatttttaaaatgcagatTTGG
CTTtagagaagaaagaaaaaatgtcaGATATTTTCTGTTGGCAATATGCA
ACAATTGTATTGCTTTCTCGTACTAATTTGCATGAAGCGAACAAAaccat
tcaaaaaaattttaagcttCTGAAATCATACGGGTAGGTTAGGAAttaat
tcaaattaaaatatAGCTAACATTAAACACTTATTTATTATGATACTAAA
TTAACTCAAAAGTCTCACGCAGCCTCAATTAGAAATATATCTCACCTTCT
TTATTTCCAGCACCCAGAGACATCTTGCTGCTTGGTTGAAAGCCTGAATT
GAAACAGGTAGGACAATTTTTATAACTATGgtttttttgcttttatgtTC
AGGGACctaatttttaaaatgcagatTTGGCTTtagagaagaaagaaaaa
atgtcaGATATTTTCTGTTGGCAATATGCAACAATTGTATTGCTTTCTCG
TACTTATTTGCATGAAGCGAACAAAacccttcaaaaaaaaattatgcttc
TGAAATCATACGGGTAGGTTAGGAAttaattcaaattaaaatatAGCTAA
CGTTTTTGCTGGTCGAATACTGGACTTTTtgctgaaagaaaaaagttgaa
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCA
GCGCTTTTTAGCTCATTGCCTTTAGATCCCATTAATTCTAAAAACAGTTT
AAAGGTAAACAATATGTCAAAATTGCAACTGCAACTTCTTTTATCTTATG
CCCATTTTTTatgaataatattttgaaaaaaaatcaccaaaaccaCAATA
TTATATATCCTGGAAGTTTTGcattgaaatttttaatttaattggTAGGG
CAACAGCAACATGGTTGCTGATAAATAATTACTGGTTTATGCCTCTAACT
CAAAGAGAAATGTCTTACCGTCAAAGTTTTGGACCCAGTTGTCAAGGATG
TTCTCGTTAAGCTCAAAAGATTTGTCTAAGATTAAGATAGAAAGTAAAGT
ATtgttcaaaatttctgaaatgatGATCTTAAATTTTCTTTAGCTTTAAG
ATTGAATTTTTAAGCTCTAGCCATGACCAAGAACTAAACTGCTCAAGTAG
TAGCCTAACCCAGACATAGATAAACCCAAGATATTTTGAAACTTCACTGT
TTTAACACATTCTGCTTACCGCCACTTTTGTTGATGATAATAGACGAGAG
TATTTCATCTGTCTTTTTGATTGCCTTTTTTGCTGCCTTGTCTGCTTTCA
CTAAAAAATGGCATAAATAGGGTAGAGAgactttgaatttttcaattggg
gtttgaaattattttggatCAGAGACTCCATAAGATTTAGGACTATATGC
ACAGGTTTGttaatttgatatttcaatatATTACTAAGTAAACTTTTGTG
TGGTATACCTATTTCAGGATCTTGCTTTTTAGTCTTTTTGACTTCCATTT
TCGTGTCAGTCTTCATTACTAGGAATTGAAAGTGATATTCTTGCTTACTT
GGCTGTTTCGATTTGAAAGCGCTTTTACTAGTTTAAAAGCTGAAAAGTTC
TAatttagaaattaaaaaaatataactttttaaaCTCGTTACAAACAAGC
AAaacttaattccaattttaAGCAAGATGTGCTTTTATGTGTCATTCTAG
GCATTACCTTCTTCTGTAGAGGCTcctttcttctttgtttttttagtcTT
TGGTTGTGTAAGTACGTTTTCTtgagttgaaaaagaaaaagatagtTGAA
AATATGTTTATAGAATTACATGGTATTTGTGCATTGCTCCTNcttcttct
ttgcttttttaGTCTTCGGTTGTGTAGGTACGTTTTCTtgagttgaaaaa
gaaaaagatagtTGAAAATATGTTTATAGAATTACATGGTATTTGTGCAT
TGCTCCTTAGCAAGGGAATCAAAGATTGAGATTTTAATTTGAAAGGTTAA
GCTAGTGCCAAAGAGCTACAAACAATAAAAAGTTTTCTAAGATGATAGAA
TCAATACCTTTATCAATTCCATCTAAGGTACAATCTTCTTTTTGTTCCGC
CTGGCACTCCCGGGCCCCTgaaagatgaaatatttttcattcttcAGTCT
AGTCTTTCTCAATAGACCCTCTAGATTGAAAATCTTACCAAATGTAAATA
CCACCTGGGCTTAAAGTTAAGTCCTTAGCAGTTAAGATGTCACTTTTAAT
TAAACGAATGACGAATTTATCTCTTGACAGGTGCTGAGGCTttgattgaa
gatgaaaatacaaagaagaGATGGAAGTTTATCTGGTCCATTAGCACCGT
CTtggattcaaaagtataatgGTAGTCACAAATATCAATCAAAATTATTG
GACTGAACAATTACCTTTTCGTTTTTTGGCAACAGCTGTCACGCAAGCTT
CGTAGTATTTCTTGTGATGTGGATACCAGAAAAAACCACGTCGACCAACT
TTTATCCCTGACATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043082-exon-sc0003905-1491911889:23..209 | TCONS_00043082-exon-sc0003905-1491911889:23..209 | Clytia hemisphaerica | exon |
| TCONS_00043082-exon-sc0003905-1510915933:23..209 | TCONS_00043082-exon-sc0003905-1510915933:23..209 | Clytia hemisphaerica | exon |
| TCONS_00043082-exon-sc0003905-1575043694:23..209 | TCONS_00043082-exon-sc0003905-1575043694:23..209 | Clytia hemisphaerica | exon |
| TCONS_00043082-exon-sc0003905-1491911889:3483..3529 | TCONS_00043082-exon-sc0003905-1491911889:3483..3529 | Clytia hemisphaerica | exon |
| TCONS_00043082-exon-sc0003905-1510915933:3483..3529 | TCONS_00043082-exon-sc0003905-1510915933:3483..3529 | Clytia hemisphaerica | exon |
| TCONS_00043082-exon-sc0003905-1575043694:3483..3529 | TCONS_00043082-exon-sc0003905-1575043694:3483..3529 | Clytia hemisphaerica | exon |
| TCONS_00043082-exon-sc0003905-1491911889:6803..7038 | TCONS_00043082-exon-sc0003905-1491911889:6803..7038 | Clytia hemisphaerica | exon |
| TCONS_00043082-exon-sc0003905-1510915933:6803..7038 | TCONS_00043082-exon-sc0003905-1510915933:6803..7038 | Clytia hemisphaerica | exon |
| TCONS_00043082-exon-sc0003905-1575043694:6803..7038 | TCONS_00043082-exon-sc0003905-1575043694:6803..7038 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003905 | supercontig | sc0003905:23..7038 + |
Blast
The following BLAST results are available for this feature:
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