TCONS_00043058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043058
Unique NameTCONS_00043058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043058 ID=TCONS_00043058|Name=TCONS_00043058|organism=Clytia hemisphaerica|type=transcript|length=323bp
ACTTACAACTTGCTGTAAAAAAGCAGGGATCGATTCAAAAATCAACGGAA
CCCTCAATCGCCATCGAGTATCGTCTATTATGGGTGCCCTTGATATGTcg
gagaaagaaagaaatttatctTATGAACAACACTTCGGACATTCCGAGGA
GATGAACAAATATGTTTATCAGATTCCACAAGCAGAACAACAGCTTGCAC
GAACTGGGGAGTTTTTGGTCCTTATTGACATcaaccaacgatgtaaaaat
aatagataaccaactacctctagaaggcacttctcccaagagaacaacca
ttgttttcctattgaaatgagca
Run BLAST on NCBI

transcript from alignment at sc0003894:6821..7143

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043058 ID=TCONS_00043058|Name=TCONS_00043058|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at sc0003894:6821..7143 (Clytia hemisphaerica)
tgctcatttcaataggaaaacaatggttgttctcttgggagaagtgcctt
ctagaggtagttggttatctattatttttacatcgttggttgATGTCAAT
AAGGACCAAAAACTCCCCAGTTCGTGCAAGCTGTTGTTCTGCTTGTGGAA
TCTGATAAACATATTTGTTCATCTCCTCGGAATGTCCGAAGTGTTGTTCA
TAagataaatttctttctttctccgACATATCAAGGGCACCCATAATAGA
CGATACTCGATGGCGATTGAGGGTTCCGTTGATTTTTGAATCGATCCCTG
CTTTTTTACAGCAAGTTGTAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026800XLOC_026800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043058-exon-sc0003894-1491911889:6821..7143TCONS_00043058-exon-sc0003894-1491911889:6821..7143Clytia hemisphaericaexon
TCONS_00043058-exon-sc0003894-1510915933:6821..7143TCONS_00043058-exon-sc0003894-1510915933:6821..7143Clytia hemisphaericaexon
TCONS_00043058-exon-sc0003894-1575043694:6821..7143TCONS_00043058-exon-sc0003894-1575043694:6821..7143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003894supercontigsc0003894:6821..7143 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09971	0	5.02292	5.59336	9.20493	8.77687	13.1595	12.2893	3.60652	7.43822	0.498276	3.69183	4.14123	4.20857	1.22317	1.83826	0.927771	2.80033	6.81731	7.78889	3.96279	4.18084	6.23871	6.36505	0	4.6074	18.8919	15.9284	5.90833	4.5959
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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