TCONS_00043053 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043053
Unique NameTCONS_00043053
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length988

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043053 ID=TCONS_00043053|Name=TCONS_00043053|organism=Clytia hemisphaerica|type=transcript|length=988bp
agttcaTGGAATATAAAACCAAGTATCAAGAATCAATGAGAGATTTGCAA
AATCAGCTTCGTCAAGCTCAAAATGAAGCGCGAGAAGCGGCAGACAAGAT
GAGTGATGAGTCAGATGTCACCGAACTTCAAGAAGCTGTTGAAATGGCCA
CCCTTGACAAGGAAATGGCCGAAGAAAAATTTGAAAGTTTGACTCAAGAA
CACGATGTTTTGAAAGACAAATTTGAAGAGACTTCCTTGGAACTTGAAAT
CCTCAAGAATGAAATCAGCGAAGGAGGAGTGGAAAGTGTACAAGCCAATG
CTCAAACGAAACAGATGGAACAGCAAAACATTCGATTGAAAGAAGCCCTT
CTCAAACTGAAAGACATAGCGCAAAATGACAAAGCCGAATTAGCCAGTGT
GACCAAACAAAACAAAGAGTTGAGTCAGCAAGTCTCCACTATTGGTGGTG
AGCGAGATAAACTTCAAGAACGTTTGCAAGAAGCCATTGAACAGGTCGAT
GATCTGAAAGAACAGGTTGATATGGCTTTGGGAGCTGAAGAAATGGTGGA
AAAATTAACCGATAAAAATTTGGACCTTGAAGAAAAAATTGAACAGTTGG
AGGAATCTGTTCAAGATTTGGAAGCTTTACGTGAGCTGAACATCGAGTTG
GAAGAAAGTCACGTTCAAACGGAACATGATCTTCGCGAAGAACTTGATAT
GGCCGACAGCAAGATCAGAGAGTTGGAACGGACGGTGATCGCGAACATCG
AACAAACGAACGATTACCAAGAGACCATCAGGAAGTTTCGTGAATTGGTA
CAACAACTGCAGGGTCGCATTAAAGATTTGCACGAACAATCATCCGACTC
TTTGAAAATCGACGACCTGGATACGACGCCCGTCCCTGAGATTGACGTCA
AAACGAAAATCGCTGAAACCAAACAGCACGGAAGAGTAATTGAGTTGGAA
TTGAACAAATATTACGTGCGAGAAGCAAACAAGAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00043053-protein

>TCONS_00043053-protein ID=TCONS_00043053-protein|Name=TCONS_00043053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
FMEYKTKYQESMRDLQNQLRQAQNEAREAADKMSDESDVTELQEAVEMAT
LDKEMAEEKFESLTQEHDVLKDKFEETSLELEILKNEISEGGVESVQANA
QTKQMEQQNIRLKEALLKLKDIAQNDKAELASVTKQNKELSQQVSTIGGE
RDKLQERLQEAIEQVDDLKEQVDMALGAEEMVEKLTDKNLDLEEKIEQLE
ESVQDLEALRELNIELEESHVQTEHDLREELDMADSKIRELERTVIANIE
QTNDYQETIRKFRELVQQLQGRIKDLHEQSSDSLKIDDLDTTPVPEIDVK
TKIAETKQHGRVIELELNKYYVREANKK
Run BLAST on NCBI

transcript from alignment at sc0003887:1..4097-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043053 ID=TCONS_00043053|Name=TCONS_00043053|organism=Clytia hemisphaerica|type=transcript|length=4097bp|location=Sequence derived from alignment at sc0003887:1..4097- (Clytia hemisphaerica)
AGTTCATGGAATATAAAACCAAGTATCAAGAATCAATGAGAGATTTGCAA
AATCAGCTTCGTCAAGCTCAAAATGTAAGACCCGTTTTCTCTCTCATTCA
AAGTTCAGACAAAATCTAGTAACGTTTTACAGATAATTTCTACTTCATTT
TCTACCATGAATATTGTACAAGAGGAATATGAGAGAATGCTATGTCGAAT
TTTTAGCTATGAAATGCTGTCCGGGAATTTTGTGAACACATTGGTAAAAT
GGGCTAGGTCCTTAAAATCGTGACATCTGAAATATTAGAATTGCTTGGTT
TAGTTATAACAAAACATCTTTTATGCCATATCATATCACATAAGTAACCA
CGTTTTGTTTTCTCCACAACACAGGAAGCGCGAGAAGCGGCAGACAAGAT
GAGTGATGAGTCAGATGTCACCGAACTTCAAGAAGCTGTTGAAATGGCCA
CCCTTGACAAGGAAATGGCCGAAGAAAAAGTACGTTTTCGTTTATGAGAT
GTTGAATTTTGACCACTTTTGTTGTATTTTTTTTGTCAATCTGTTTCAAA
AAGTGATATACACTTAGTAGCTTGATTGAGTTTTTATAGATTAAACTTAC
TCACCTAATTTGATTTGGAATCTTTTTACTTTTGGTCGATAGTTTGAAAG
TTTGACTCAAGAACACGATGTTTTGAAAGACAAATTTGAAGAGACTTCCT
TGGAACTTGAAATCCTCAAGAATGAAATCAGCGAAGGAGGTAGGTACAGA
AATAAGGGTCCCCCTGTAGGTCAGCGTTGTGACACCATTCACTTTTGCAT
ATAATTTTTCATTGAATTTTGTTTAAATTTGGGCAAAATTAGTCTTGAAT
ATAGCCAGCTTTAAAGAAAACCGTTTGCCAAAATTAAAACGTTCGAACTG
AAAAATTTCGAAACGGCAAAACAAATTTAACACAAAATATTACTTACTTT
ACCATGTTTACCAAGGTTCAGAAGCCGACAAGTCATAGAACGTTCAATTC
AAATGCTCTAATTTTATTCAAGGAGTGGAAAGTGTACAAGCCAATGCTCA
AACGAAACAGATGGAACAGCAAAACATTCGATTGAAAGAAGCCCTTCTCA
AGTATGTACTCATAACTTTTGCATACAATTTCATCTTCTCCCGTGAGCCT
ATAAACAAATCTTTCTCACTTCGCTGAAATCGACTTTACTTGCTATCAAG
CTTCATTGATTTTCCAAAACCTTCGATTAAAATAAGTTTACTTTAAGGTT
ATACATTTTTCTATTTTCATCTGCGAATCTCAAATTTTCAGTTTACTTAA
ACTCTGGGCATCCAACCTCACCAAGGCCTTGCCATTTCAGGTCATTCATA
TATTTTGCTGGTTTTAGCTTTTTTCTTGTATCTTGATCAGAGCCCCGGGG
AATGGGGGTACTAGGGGTGCGAGCTGGCAGGGGGTGCCGCCCAACTTTTG
ATTTTGACTCCTCTGATTTGATATTGTTTACACTGGTTGTGCTAAATGGA
TAAATTTTCCTAATATGCACCTTGATTCAAAAGTTTTTTTAGGTTAACTA
CTAAATGCAATTTCAAGAATTATTTTTAACTCATCAGACTGAAAGACATA
GCGCAAAATGACAAAGCCGAATTAGCCAGTGTGACCAAACAAAACAAAGA
GTTGAGTCAGCAAGTCTCCACTATTGGTGGTGAGCGAGATAAACTTCAAG
AACGTTTGCAAGAAGCCATTGAACAGGTCGATGATCTGAAAGAACAGGTT
CGAAACACTTTTCACAACCTACCCATCCCTTCTGAAGAACGTTTGAGAAT
ATTAAAGTTTAAAATTCCTTAAAGCAGGCTGAAATAATCAAATGTTTTTG
TAACATAATTTACTCATTCCGTAATTGTTGCTACATTAATAAACGGCCAT
CAAAATTTTTATATGGTATGCCACTAATTTAAGATAAGACGGTTAAGGGA
CGAATTCTTTCTTGGCTGTAAAAAGAAATTCACCAAATCAATAATCAATT
GGTCTAGAAGTTCCTGTTTTGTTCATTAAAGACTTTAAGCACATAATCTT
TGGACAGATAATTTGCTCTACTGATCTTTTCTAACATTATCAAAGATTTC
ATAACTTTCTTATAGGTTGATATGGCTTTGGGAGCTGAAGAAATGGTGGA
AAAATTAACCGATAAAAATTTGGACCTTGAAGAAAAAATTGAACAGTTGG
AGGAATCTGTTCAAGATTTGGTAAGAACAAATTCCTTCTTTGGAAAATCA
TTTTTTCTTCAAAAAAAGTTCAAAAAAATTCAATTTTTTGCTTTAGAAAT
TAGGAAATTCTCTTAAAATCCCTTTTGTAGTAGCAGTTTTTAAAGATCTT
CAGTTGATACATACCACAATGAAGTAAGCGTCATATTGTTCACGTAGTAA
CGGTTTGACCCCCTGATTGAGTCAGTGCCTTGATCATTTTGTATTTACCG
CGAATAAATCGTTATAGGCATCTCGTATAAACTTATTCCAGGGCCTGTAC
ACCATCTCATTAAATTAATAGACACGTCTTGCCAGGGGGACAATATCGAG
TTTATTGTCTCTAAAATTAACATTCTCCTTTATCATTCAAACTGCAGGAA
GCTTTACGTGAGCTGAACATCGAGTTGGAAGAAAGTCACGTTCAAACGGA
ACATGATCTTCGCGAAGAACTTGATATGGCCGACAGCAAGATCAGAGAGG
TTAGATAAGTTCTTTTACTCTTACCCTCGTGATGGTCTGCTTTGGATTTT
TTATTTCATCATTTTTTCCGACGCAAAATTTAACTCCGCTTTATCTCAGC
ATTTGCCGTTTGCTGAAGCAAATTTGTCTGAGCTGATGGTTAAAAAGTAC
TCAAGTATCAAAAATGAGGGATCAAAATTCCTCCCTTCGACAAAAATTGT
AGTTTTAAAGCTCGACATATTTCATCAGTACAGTTTTATAATTACATGAA
TTTGAAATATGACTTAAAAAGTGACCGGACCTAAAGCAATCCAAGGAGAT
TGCTAAAAGATGTCAAGTCGCTTCCTTTTAAGTAAATTTTTTTCCTAGAA
ACGCCTTTCAAACCAGTTCAAACGTATCCTTTGTGTTTACCAGTGTAGAT
GCAACAATTTTGTAAATGCTTTCCTGTATTTACTTTCTAGTTGGAACGGA
CGGTGATCGCGAACATCGAACAAACGAACGATTACCAAGAGACCATCAGG
AAGTTTCGTGAATTGGTACAACAACTGCAGGTAAATTTTCTTTTTAATCG
TTTTAAAGTCGTTCCATCTATAAGTAGAATCTTTCTATAATACAAGCTGG
TTTTCAAGTGGTAAGCCCACGCAAAAAGCTCTCTATAATTCGAAAAAAGA
GACTTCTTGTTCGGGTTTGCGTAGGCGAGAGTAGAAAATATAACTATAAA
CTGTATATTATATTATGTACTTCGAAATCAGCACCTTCTCAATGAAGGAT
TAAAAAACTGATCAAACACTAAATCTTAGTTGCAACGCTTAGCGAGACAT
AATATCCTACTAGCTAACACAAACTGTTTTCCACAGGGTCGCATTAAAGA
TTTGCACGAACAATCATCCGACTCTTTGAAAATCGACGACCTGGATACGA
CGCCCGTCCCTGAGATTGACGTCAAAACGAAAATCGCTGAAACCAAACAG
CACGGAAGAGTAAGAAATGAGTTCTTCTCTCGTACCGAAATTAAGTTGCT
CTGAAAGAGATTCTAGGAAATTTACCCCCAATGAGAATTACCCAAGAAAA
ATTAACAAGTGTTTATTTGTCCCTTTAAGTCTTTTTTTCTTGTGATAAAT
TTCATTTTTATGTCTAAATCCGCGAAATTTATGATCACTAAAAAAAAGAT
TTTTTTCTTGAATTCGCGTACGTTTCTCGTAAATTCTGCGATTTTTCAAC
CTCATGAAACTTTGTGGTCGCAAAAGTTTGTTCGACTAAAGTAGGTTTGA
AACAGTGTAATAGACATGTATTACCCGTTCTCTTCTTTCAATTCAAATGC
AGATACAAATGATTTTTGATGATAAATATACAATGTTTTTTCAGGTAATT
GAGTTGGAATTGAACAAATATTACGTGCGAGAAGCAAACAAGAAAAT

Coding sequence (CDS) from alignment at sc0003887:1..4097-

>TCONS_00043053 ID=TCONS_00043053|Name=TCONS_00043053|organism=Clytia hemisphaerica|type=CDS|length=9840bp|location=Sequence derived from alignment at sc0003887:1..4097- (Clytia hemisphaerica)
GTAATTGAGTTGGAATTGAACAAATATTACGTGCGAGAAGCAAACAAGAA
AGGTCGCATTAAAGATTTGCACGAACAATCATCCGACTCTTTGAAAATCG
ACGACCTGGATACGACGCCCGTCCCTGAGATTGACGTCAAAACGAAAATC
GCTGAAACCAAACAGCACGGAAGATTGGAACGGACGGTGATCGCGAACAT
CGAACAAACGAACGATTACCAAGAGACCATCAGGAAGTTTCGTGAATTGG
TACAACAACTGCAGGAAGCTTTACGTGAGCTGAACATCGAGTTGGAAGAA
AGTCACGTTCAAACGGAACATGATCTTCGCGAAGAACTTGATATGGCCGA
CAGCAAGATCAGAGAGGTTGATATGGCTTTGGGAGCTGAAGAAATGGTGG
AAAAATTAACCGATAAAAATTTGGACCTTGAAGAAAAAATTGAACAGTTG
GAGGAATCTGTTCAAGATTTGACTGAAAGACATAGCGCAAAATGACAAAG
CCGAATTAGCCAGTGTGACCAAACAAAACAAAGAGTTGAGTCAGCAAGTC
TCCACTATTGGTGGTGAGCGAGATAAACTTCAAGAACGTTTGCAAGAAGC
CATTGAACAGGTCGATGATCTGAAAGAACAGGAGTGGAAAGTGTACAAGC
CAATGCTCAAACGAAACAGATGGAACAGCAAAACATTCGATTGAAAGAAG
CCCTTCTCAATTTGAAAGTTTGACTCAAGAACACGATGTTTTGAAAGACA
AATTTGAAGAGACTTCCTTGGAACTTGAAATCCTCAAGAATGAAATCAGC
GAAGGAGGAAGCGCGAGAAGCGGCAGACAAGATGAGTGATGAGTCAGATG
TCACCGAACTTCAAGAAGCTGTTGAAATGGCCACCCTTGACAAGGAAATG
GCCGAAGAAAAATTCATGGAATATAAAACCAAGTATCAAGAATCAATGAG
AGATTTGCAAAATCAGCTTCGTCAAGCTCAAAATGTAATTGAGTTGGAAT
TGAACAAATATTACGTGCGAGAAGCAAACAAGAAAGGTCGCATTAAAGAT
TTGCACGAACAATCATCCGACTCTTTGAAAATCGACGACCTGGATACGAC
GCCCGTCCCTGAGATTGACGTCAAAACGAAAATCGCTGAAACCAAACAGC
ACGGAAGATTGGAACGGACGGTGATCGCGAACATCGAACAAACGAACGAT
TACCAAGAGACCATCAGGAAGTTTCGTGAATTGGTACAACAACTGCAGGA
AGCTTTACGTGAGCTGAACATCGAGTTGGAAGAAAGTCACGTTCAAACGG
AACATGATCTTCGCGAAGAACTTGATATGGCCGACAGCAAGATCAGAGAG
GTTGATATGGCTTTGGGAGCTGAAGAAATGGTGGAAAAATTAACCGATAA
AAATTTGGACCTTGAAGAAAAAATTGAACAGTTGGAGGAATCTGTTCAAG
ATTTGACTGAAAGACATAGCGCAAAATGACAAAGCCGAATTAGCCAGTGT
GACCAAACAAAACAAAGAGTTGAGTCAGCAAGTCTCCACTATTGGTGGTG
AGCGAGATAAACTTCAAGAACGTTTGCAAGAAGCCATTGAACAGGTCGAT
GATCTGAAAGAACAGGAGTGGAAAGTGTACAAGCCAATGCTCAAACGAAA
CAGATGGAACAGCAAAACATTCGATTGAAAGAAGCCCTTCTCAATTTGAA
AGTTTGACTCAAGAACACGATGTTTTGAAAGACAAATTTGAAGAGACTTC
CTTGGAACTTGAAATCCTCAAGAATGAAATCAGCGAAGGAGGAAGCGCGA
GAAGCGGCAGACAAGATGAGTGATGAGTCAGATGTCACCGAACTTCAAGA
AGCTGTTGAAATGGCCACCCTTGACAAGGAAATGGCCGAAGAAAAATTCA
TGGAATATAAAACCAAGTATCAAGAATCAATGAGAGATTTGCAAAATCAG
CTTCGTCAAGCTCAAAATGTAATTGAGTTGGAATTGAACAAATATTACGT
GCGAGAAGCAAACAAGAAAGGTCGCATTAAAGATTTGCACGAACAATCAT
CCGACTCTTTGAAAATCGACGACCTGGATACGACGCCCGTCCCTGAGATT
GACGTCAAAACGAAAATCGCTGAAACCAAACAGCACGGAAGATTGGAACG
GACGGTGATCGCGAACATCGAACAAACGAACGATTACCAAGAGACCATCA
GGAAGTTTCGTGAATTGGTACAACAACTGCAGGAAGCTTTACGTGAGCTG
AACATCGAGTTGGAAGAAAGTCACGTTCAAACGGAACATGATCTTCGCGA
AGAACTTGATATGGCCGACAGCAAGATCAGAGAGGTTGATATGGCTTTGG
GAGCTGAAGAAATGGTGGAAAAATTAACCGATAAAAATTTGGACCTTGAA
GAAAAAATTGAACAGTTGGAGGAATCTGTTCAAGATTTGACTGAAAGACA
TAGCGCAAAATGACAAAGCCGAATTAGCCAGTGTGACCAAACAAAACAAA
GAGTTGAGTCAGCAAGTCTCCACTATTGGTGGTGAGCGAGATAAACTTCA
AGAACGTTTGCAAGAAGCCATTGAACAGGTCGATGATCTGAAAGAACAGG
AGTGGAAAGTGTACAAGCCAATGCTCAAACGAAACAGATGGAACAGCAAA
ACATTCGATTGAAAGAAGCCCTTCTCAATTTGAAAGTTTGACTCAAGAAC
ACGATGTTTTGAAAGACAAATTTGAAGAGACTTCCTTGGAACTTGAAATC
CTCAAGAATGAAATCAGCGAAGGAGGAAGCGCGAGAAGCGGCAGACAAGA
TGAGTGATGAGTCAGATGTCACCGAACTTCAAGAAGCTGTTGAAATGGCC
ACCCTTGACAAGGAAATGGCCGAAGAAAAATTCATGGAATATAAAACCAA
GTATCAAGAATCAATGAGAGATTTGCAAAATCAGCTTCGTCAAGCTCAAA
ATGTAATTGAGTTGGAATTGAACAAATATTACGTGCGAGAAGCAAACAAG
AAAGGTCGCATTAAAGATTTGCACGAACAATCATCCGACTCTTTGAAAAT
CGACGACCTGGATACGACGCCCGTCCCTGAGATTGACGTCAAAACGAAAA
TCGCTGAAACCAAACAGCACGGAAGATTGGAACGGACGGTGATCGCGAAC
ATCGAACAAACGAACGATTACCAAGAGACCATCAGGAAGTTTCGTGAATT
GGTACAACAACTGCAGGAAGCTTTACGTGAGCTGAACATCGAGTTGGAAG
AAAGTCACGTTCAAACGGAACATGATCTTCGCGAAGAACTTGATATGGCC
GACAGCAAGATCAGAGAGGTTGATATGGCTTTGGGAGCTGAAGAAATGGT
GGAAAAATTAACCGATAAAAATTTGGACCTTGAAGAAAAAATTGAACAGT
TGGAGGAATCTGTTCAAGATTTGACTGAAAGACATAGCGCAAAATGACAA
AGCCGAATTAGCCAGTGTGACCAAACAAAACAAAGAGTTGAGTCAGCAAG
TCTCCACTATTGGTGGTGAGCGAGATAAACTTCAAGAACGTTTGCAAGAA
GCCATTGAACAGGTCGATGATCTGAAAGAACAGGAGTGGAAAGTGTACAA
GCCAATGCTCAAACGAAACAGATGGAACAGCAAAACATTCGATTGAAAGA
AGCCCTTCTCAATTTGAAAGTTTGACTCAAGAACACGATGTTTTGAAAGA
CAAATTTGAAGAGACTTCCTTGGAACTTGAAATCCTCAAGAATGAAATCA
GCGAAGGAGGAAGCGCGAGAAGCGGCAGACAAGATGAGTGATGAGTCAGA
TGTCACCGAACTTCAAGAAGCTGTTGAAATGGCCACCCTTGACAAGGAAA
TGGCCGAAGAAAAATTCATGGAATATAAAACCAAGTATCAAGAATCAATG
AGAGATTTGCAAAATCAGCTTCGTCAAGCTCAAAATGTAATTGAGTTGGA
ATTGAACAAATATTACGTGCGAGAAGCAAACAAGAAAGGTCGCATTAAAG
ATTTGCACGAACAATCATCCGACTCTTTGAAAATCGACGACCTGGATACG
ACGCCCGTCCCTGAGATTGACGTCAAAACGAAAATCGCTGAAACCAAACA
GCACGGAAGATTGGAACGGACGGTGATCGCGAACATCGAACAAACGAACG
ATTACCAAGAGACCATCAGGAAGTTTCGTGAATTGGTACAACAACTGCAG
GAAGCTTTACGTGAGCTGAACATCGAGTTGGAAGAAAGTCACGTTCAAAC
GGAACATGATCTTCGCGAAGAACTTGATATGGCCGACAGCAAGATCAGAG
AGGTTGATATGGCTTTGGGAGCTGAAGAAATGGTGGAAAAATTAACCGAT
AAAAATTTGGACCTTGAAGAAAAAATTGAACAGTTGGAGGAATCTGTTCA
AGATTTGACTGAAAGACATAGCGCAAAATGACAAAGCCGAATTAGCCAGT
GTGACCAAACAAAACAAAGAGTTGAGTCAGCAAGTCTCCACTATTGGTGG
TGAGCGAGATAAACTTCAAGAACGTTTGCAAGAAGCCATTGAACAGGTCG
ATGATCTGAAAGAACAGGAGTGGAAAGTGTACAAGCCAATGCTCAAACGA
AACAGATGGAACAGCAAAACATTCGATTGAAAGAAGCCCTTCTCAATTTG
AAAGTTTGACTCAAGAACACGATGTTTTGAAAGACAAATTTGAAGAGACT
TCCTTGGAACTTGAAATCCTCAAGAATGAAATCAGCGAAGGAGGAAGCGC
GAGAAGCGGCAGACAAGATGAGTGATGAGTCAGATGTCACCGAACTTCAA
GAAGCTGTTGAAATGGCCACCCTTGACAAGGAAATGGCCGAAGAAAAATT
CATGGAATATAAAACCAAGTATCAAGAATCAATGAGAGATTTGCAAAATC
AGCTTCGTCAAGCTCAAAATGTAATTGAGTTGGAATTGAACAAATATTAC
GTGCGAGAAGCAAACAAGAAAGGTCGCATTAAAGATTTGCACGAACAATC
ATCCGACTCTTTGAAAATCGACGACCTGGATACGACGCCCGTCCCTGAGA
TTGACGTCAAAACGAAAATCGCTGAAACCAAACAGCACGGAAGATTGGAA
CGGACGGTGATCGCGAACATCGAACAAACGAACGATTACCAAGAGACCAT
CAGGAAGTTTCGTGAATTGGTACAACAACTGCAGGAAGCTTTACGTGAGC
TGAACATCGAGTTGGAAGAAAGTCACGTTCAAACGGAACATGATCTTCGC
GAAGAACTTGATATGGCCGACAGCAAGATCAGAGAGGTTGATATGGCTTT
GGGAGCTGAAGAAATGGTGGAAAAATTAACCGATAAAAATTTGGACCTTG
AAGAAAAAATTGAACAGTTGGAGGAATCTGTTCAAGATTTGACTGAAAGA
CATAGCGCAAAATGACAAAGCCGAATTAGCCAGTGTGACCAAACAAAACA
AAGAGTTGAGTCAGCAAGTCTCCACTATTGGTGGTGAGCGAGATAAACTT
CAAGAACGTTTGCAAGAAGCCATTGAACAGGTCGATGATCTGAAAGAACA
GGAGTGGAAAGTGTACAAGCCAATGCTCAAACGAAACAGATGGAACAGCA
AAACATTCGATTGAAAGAAGCCCTTCTCAATTTGAAAGTTTGACTCAAGA
ACACGATGTTTTGAAAGACAAATTTGAAGAGACTTCCTTGGAACTTGAAA
TCCTCAAGAATGAAATCAGCGAAGGAGGAAGCGCGAGAAGCGGCAGACAA
GATGAGTGATGAGTCAGATGTCACCGAACTTCAAGAAGCTGTTGAAATGG
CCACCCTTGACAAGGAAATGGCCGAAGAAAAATTCATGGAATATAAAACC
AAGTATCAAGAATCAATGAGAGATTTGCAAAATCAGCTTCGTCAAGCTCA
AAATGTAATTGAGTTGGAATTGAACAAATATTACGTGCGAGAAGCAAACA
AGAAAGGTCGCATTAAAGATTTGCACGAACAATCATCCGACTCTTTGAAA
ATCGACGACCTGGATACGACGCCCGTCCCTGAGATTGACGTCAAAACGAA
AATCGCTGAAACCAAACAGCACGGAAGATTGGAACGGACGGTGATCGCGA
ACATCGAACAAACGAACGATTACCAAGAGACCATCAGGAAGTTTCGTGAA
TTGGTACAACAACTGCAGGAAGCTTTACGTGAGCTGAACATCGAGTTGGA
AGAAAGTCACGTTCAAACGGAACATGATCTTCGCGAAGAACTTGATATGG
CCGACAGCAAGATCAGAGAGGTTGATATGGCTTTGGGAGCTGAAGAAATG
GTGGAAAAATTAACCGATAAAAATTTGGACCTTGAAGAAAAAATTGAACA
GTTGGAGGAATCTGTTCAAGATTTGACTGAAAGACATAGCGCAAAATGAC
AAAGCCGAATTAGCCAGTGTGACCAAACAAAACAAAGAGTTGAGTCAGCA
AGTCTCCACTATTGGTGGTGAGCGAGATAAACTTCAAGAACGTTTGCAAG
AAGCCATTGAACAGGTCGATGATCTGAAAGAACAGGAGTGGAAAGTGTAC
AAGCCAATGCTCAAACGAAACAGATGGAACAGCAAAACATTCGATTGAAA
GAAGCCCTTCTCAATTTGAAAGTTTGACTCAAGAACACGATGTTTTGAAA
GACAAATTTGAAGAGACTTCCTTGGAACTTGAAATCCTCAAGAATGAAAT
CAGCGAAGGAGGAAGCGCGAGAAGCGGCAGACAAGATGAGTGATGAGTCA
GATGTCACCGAACTTCAAGAAGCTGTTGAAATGGCCACCCTTGACAAGGA
AATGGCCGAAGAAAAATTCATGGAATATAAAACCAAGTATCAAGAATCAA
TGAGAGATTTGCAAAATCAGCTTCGTCAAGCTCAAAATGTAATTGAGTTG
GAATTGAACAAATATTACGTGCGAGAAGCAAACAAGAAAGGTCGCATTAA
AGATTTGCACGAACAATCATCCGACTCTTTGAAAATCGACGACCTGGATA
CGACGCCCGTCCCTGAGATTGACGTCAAAACGAAAATCGCTGAAACCAAA
CAGCACGGAAGATTGGAACGGACGGTGATCGCGAACATCGAACAAACGAA
CGATTACCAAGAGACCATCAGGAAGTTTCGTGAATTGGTACAACAACTGC
AGGAAGCTTTACGTGAGCTGAACATCGAGTTGGAAGAAAGTCACGTTCAA
ACGGAACATGATCTTCGCGAAGAACTTGATATGGCCGACAGCAAGATCAG
AGAGGTTGATATGGCTTTGGGAGCTGAAGAAATGGTGGAAAAATTAACCG
ATAAAAATTTGGACCTTGAAGAAAAAATTGAACAGTTGGAGGAATCTGTT
CAAGATTTGACTGAAAGACATAGCGCAAAATGACAAAGCCGAATTAGCCA
GTGTGACCAAACAAAACAAAGAGTTGAGTCAGCAAGTCTCCACTATTGGT
GGTGAGCGAGATAAACTTCAAGAACGTTTGCAAGAAGCCATTGAACAGGT
CGATGATCTGAAAGAACAGGAGTGGAAAGTGTACAAGCCAATGCTCAAAC
GAAACAGATGGAACAGCAAAACATTCGATTGAAAGAAGCCCTTCTCAATT
TGAAAGTTTGACTCAAGAACACGATGTTTTGAAAGACAAATTTGAAGAGA
CTTCCTTGGAACTTGAAATCCTCAAGAATGAAATCAGCGAAGGAGGAAGC
GCGAGAAGCGGCAGACAAGATGAGTGATGAGTCAGATGTCACCGAACTTC
AAGAAGCTGTTGAAATGGCCACCCTTGACAAGGAAATGGCCGAAGAAAAA
TTCATGGAATATAAAACCAAGTATCAAGAATCAATGAGAGATTTGCAAAA
TCAGCTTCGTCAAGCTCAAAATGTAATTGAGTTGGAATTGAACAAATATT
ACGTGCGAGAAGCAAACAAGAAAGGTCGCATTAAAGATTTGCACGAACAA
TCATCCGACTCTTTGAAAATCGACGACCTGGATACGACGCCCGTCCCTGA
GATTGACGTCAAAACGAAAATCGCTGAAACCAAACAGCACGGAAGATTGG
AACGGACGGTGATCGCGAACATCGAACAAACGAACGATTACCAAGAGACC
ATCAGGAAGTTTCGTGAATTGGTACAACAACTGCAGGAAGCTTTACGTGA
GCTGAACATCGAGTTGGAAGAAAGTCACGTTCAAACGGAACATGATCTTC
GCGAAGAACTTGATATGGCCGACAGCAAGATCAGAGAGGTTGATATGGCT
TTGGGAGCTGAAGAAATGGTGGAAAAATTAACCGATAAAAATTTGGACCT
TGAAGAAAAAATTGAACAGTTGGAGGAATCTGTTCAAGATTTGACTGAAA
GACATAGCGCAAAATGACAAAGCCGAATTAGCCAGTGTGACCAAACAAAA
CAAAGAGTTGAGTCAGCAAGTCTCCACTATTGGTGGTGAGCGAGATAAAC
TTCAAGAACGTTTGCAAGAAGCCATTGAACAGGTCGATGATCTGAAAGAA
CAGGAGTGGAAAGTGTACAAGCCAATGCTCAAACGAAACAGATGGAACAG
CAAAACATTCGATTGAAAGAAGCCCTTCTCAATTTGAAAGTTTGACTCAA
GAACACGATGTTTTGAAAGACAAATTTGAAGAGACTTCCTTGGAACTTGA
AATCCTCAAGAATGAAATCAGCGAAGGAGGAAGCGCGAGAAGCGGCAGAC
AAGATGAGTGATGAGTCAGATGTCACCGAACTTCAAGAAGCTGTTGAAAT
GGCCACCCTTGACAAGGAAATGGCCGAAGAAAAATTCATGGAATATAAAA
CCAAGTATCAAGAATCAATGAGAGATTTGCAAAATCAGCTTCGTCAAGCT
CAAAATGTAATTGAGTTGGAATTGAACAAATATTACGTGCGAGAAGCAAA
CAAGAAAGGTCGCATTAAAGATTTGCACGAACAATCATCCGACTCTTTGA
AAATCGACGACCTGGATACGACGCCCGTCCCTGAGATTGACGTCAAAACG
AAAATCGCTGAAACCAAACAGCACGGAAGATTGGAACGGACGGTGATCGC
GAACATCGAACAAACGAACGATTACCAAGAGACCATCAGGAAGTTTCGTG
AATTGGTACAACAACTGCAGGAAGCTTTACGTGAGCTGAACATCGAGTTG
GAAGAAAGTCACGTTCAAACGGAACATGATCTTCGCGAAGAACTTGATAT
GGCCGACAGCAAGATCAGAGAGGTTGATATGGCTTTGGGAGCTGAAGAAA
TGGTGGAAAAATTAACCGATAAAAATTTGGACCTTGAAGAAAAAATTGAA
CAGTTGGAGGAATCTGTTCAAGATTTGACTGAAAGACATAGCGCAAAATG
ACAAAGCCGAATTAGCCAGTGTGACCAAACAAAACAAAGAGTTGAGTCAG
CAAGTCTCCACTATTGGTGGTGAGCGAGATAAACTTCAAGAACGTTTGCA
AGAAGCCATTGAACAGGTCGATGATCTGAAAGAACAGGAGTGGAAAGTGT
ACAAGCCAATGCTCAAACGAAACAGATGGAACAGCAAAACATTCGATTGA
AAGAAGCCCTTCTCAATTTGAAAGTTTGACTCAAGAACACGATGTTTTGA
AAGACAAATTTGAAGAGACTTCCTTGGAACTTGAAATCCTCAAGAATGAA
ATCAGCGAAGGAGGAAGCGCGAGAAGCGGCAGACAAGATGAGTGATGAGT
CAGATGTCACCGAACTTCAAGAAGCTGTTGAAATGGCCACCCTTGACAAG
GAAATGGCCGAAGAAAAATTCATGGAATATAAAACCAAGTATCAAGAATC
AATGAGAGATTTGCAAAATCAGCTTCGTCAAGCTCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026795XLOC_026795Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043053-proteinTCONS_00043053-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043053-exon-sc0003887-1575043694:4024..4097TCONS_00043053-exon-sc0003887-1575043694:4024..4097Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1575043694:3619..3723TCONS_00043053-exon-sc0003887-1575043694:3619..3723Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1575043694:3359..3455TCONS_00043053-exon-sc0003887-1575043694:3359..3455Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1575043694:2997..3075TCONS_00043053-exon-sc0003887-1575043694:2997..3075Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1575043694:2351..2510TCONS_00043053-exon-sc0003887-1575043694:2351..2510Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1575043694:1878..1982TCONS_00043053-exon-sc0003887-1575043694:1878..1982Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1575043694:1399..1500TCONS_00043053-exon-sc0003887-1575043694:1399..1500Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1575043694:868..957TCONS_00043053-exon-sc0003887-1575043694:868..957Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1575043694:439..561TCONS_00043053-exon-sc0003887-1575043694:439..561Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1575043694:1..53TCONS_00043053-exon-sc0003887-1575043694:1..53Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1510915933:4024..4097TCONS_00043053-exon-sc0003887-1510915933:4024..4097Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1510915933:3619..3723TCONS_00043053-exon-sc0003887-1510915933:3619..3723Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1510915933:3359..3455TCONS_00043053-exon-sc0003887-1510915933:3359..3455Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1510915933:2997..3075TCONS_00043053-exon-sc0003887-1510915933:2997..3075Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1510915933:2351..2510TCONS_00043053-exon-sc0003887-1510915933:2351..2510Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1510915933:1878..1982TCONS_00043053-exon-sc0003887-1510915933:1878..1982Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1510915933:1399..1500TCONS_00043053-exon-sc0003887-1510915933:1399..1500Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1510915933:868..957TCONS_00043053-exon-sc0003887-1510915933:868..957Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1510915933:439..561TCONS_00043053-exon-sc0003887-1510915933:439..561Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1510915933:1..53TCONS_00043053-exon-sc0003887-1510915933:1..53Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1491911889:4024..4097TCONS_00043053-exon-sc0003887-1491911889:4024..4097Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1491911889:3619..3723TCONS_00043053-exon-sc0003887-1491911889:3619..3723Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1491911889:3359..3455TCONS_00043053-exon-sc0003887-1491911889:3359..3455Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1491911889:2997..3075TCONS_00043053-exon-sc0003887-1491911889:2997..3075Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1491911889:2351..2510TCONS_00043053-exon-sc0003887-1491911889:2351..2510Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1491911889:1878..1982TCONS_00043053-exon-sc0003887-1491911889:1878..1982Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1491911889:1399..1500TCONS_00043053-exon-sc0003887-1491911889:1399..1500Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1491911889:868..957TCONS_00043053-exon-sc0003887-1491911889:868..957Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1491911889:439..561TCONS_00043053-exon-sc0003887-1491911889:439..561Clytia hemisphaericaexon
TCONS_00043053-exon-sc0003887-1491911889:1..53TCONS_00043053-exon-sc0003887-1491911889:1..53Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003887supercontigsc0003887:1..4097 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.3994	28.6837	12.4988	7.49738	57.1791	43.485	59.7819	67.314	36.9383	46.0344	38.6187	28.8128	24.3943	26.6215	25.9433	28.4048	34.5411	33.2593	19.635	30.31	25.4544	25.2359	27.0373	26.6044	41.0921	42.8977	31.5605	31.5937	31.5433	30.6633
Blast
[Close]
BLAST of TCONS_00043053 vs. Swiss-Prot (Human)
Match: DCTN1 (Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.055e-72
Identity = 151/333 (45.35%), Postives = 227/333 (68.17%), Query Frame = 3 
Query:    9 EYKTKYQESMRDLQNQLRQAQNEAREA-------ADKMSDESDVTELQEAVEMATLDKEMAEEKFESLTQEHDVLKDKFEETSLELEILKNEISEGGVESVQANAQTKQMEQQNIRLKEALLKLKDIAQNDKAELASVTKQNKELSQQVSTIGGERDKLQERLQEAIEQVDDLKEQVDMALGAEEMVEKLTDKNLDLEEKIEQLEESVQDLEALRELNIELEESHVQTEHDLREELDMADSKIRELERTVIANIEQTNDYQETIRKFRELVQQLQGRIKDLHEQSSDSLKIDDLDTTPVPE-IDVKTKIAETKQHGRVIELELNKYYVREANK 983
            E+K+K QE   DLQ +L++A+ EA+EA        ++M+D +D      A+EMATLDKEMAEE+ ESL QE + LK++ +E + +LEILK EI E G +   ++ Q KQ+E+QN RLK+AL++++D++ ++K E   + K  ++ +Q++  +  +R++LQE L +A   +D+LKEQVD ALGAEEMVE LTD+NL+LEEK+ +L E+V DLEA+ E+N EL+E+  +TE +LRE+LDMA +++RE ++ V A  E   DYQ+TI+K+R+L   LQ   ++L  Q   S+   +    P PE  D K K AETK H + IE+EL +  V +AN+
Sbjct:  260 EWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTAD------AIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQEASV---ERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANR 583
The following BLAST results are available for this feature:
BLAST of TCONS_00043053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCTN11.055e-7245.35Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 S... [more]
back to top