TCONS_00043053-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00043053-protein
Unique Name	TCONS_00043053-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	328

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00043053-protein ID=TCONS_00043053-protein|Name=TCONS_00043053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
FMEYKTKYQESMRDLQNQLRQAQNEAREAADKMSDESDVTELQEAVEMAT
LDKEMAEEKFESLTQEHDVLKDKFEETSLELEILKNEISEGGVESVQANA
QTKQMEQQNIRLKEALLKLKDIAQNDKAELASVTKQNKELSQQVSTIGGE
RDKLQERLQEAIEQVDDLKEQVDMALGAEEMVEKLTDKNLDLEEKIEQLE
ESVQDLEALRELNIELEESHVQTEHDLREELDMADSKIRELERTVIANIE
QTNDYQETIRKFRELVQQLQGRIKDLHEQSSDSLKIDDLDTTPVPEIDVK
TKIAETKQHGRVIELELNKYYVREANKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_026795	XLOC_026795	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00043053	TCONS_00043053	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..244
None	No IPR available	COILS	Coil	Coil	coord: 252..279
None	No IPR available	COILS	Coil	Coil	coord: 5..87
None	No IPR available	GENE3D	1.20.5.1000		coord: 112..176 e-value: 0.026 score: 14.0 coord: 36..111 e-value: 0.24 score: 10.9
None	No IPR available	GENE3D	1.20.5.340		coord: 177..286 e-value: 5.2E-4 score: 19.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39

Blast

[Close]

BLAST of TCONS_00043053-protein vs. Swiss-Prot (Human)
Match: DCTN1 (Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.811e-73
Identity = 151/333 (45.35%), Postives = 227/333 (68.17%), Query Frame = 0

Query:    3 EYKTKYQESMRDLQNQLRQAQNEAREA-------ADKMSDESDVTELQEAVEMATLDKEMAEEKFESLTQEHDVLKDKFEETSLELEILKNEISEGGVESVQANAQTKQMEQQNIRLKEALLKLKDIAQNDKAELASVTKQNKELSQQVSTIGGERDKLQERLQEAIEQVDDLKEQVDMALGAEEMVEKLTDKNLDLEEKIEQLEESVQDLEALRELNIELEESHVQTEHDLREELDMADSKIRELERTVIANIEQTNDYQETIRKFRELVQQLQGRIKDLHEQSSDSLKIDDLDTTPVPE-IDVKTKIAETKQHGRVIELELNKYYVREANK 327
            E+K+K QE   DLQ +L++A+ EA+EA        ++M+D +D      A+EMATLDKEMAEE+ ESL QE + LK++ +E + +LEILK EI E G +   ++ Q KQ+E+QN RLK+AL++++D++ ++K E   + K  ++ +Q++  +  +R++LQE L +A   +D+LKEQVD ALGAEEMVE LTD+NL+LEEK+ +L E+V DLEA+ E+N EL+E+  +TE +LRE+LDMA +++RE ++ V A  E   DYQ+TI+K+R+L   LQ   ++L  Q   S+   +    P PE  D K K AETK H + IE+EL +  V +AN+
Sbjct:  260 EWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTAD------AIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQEASV---ERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANR 583

The following BLAST results are available for this feature:

BLAST of TCONS_00043053-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00043053-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DCTN1	1.811e-73	45.35	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 S...	[more]

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TCONS_00043053-protein (polypeptide) - C. hemisphaerica