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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043030 ID=TCONS_00043030|Name=TCONS_00043030|organism=Clytia hemisphaerica|type=transcript|length=1110bp
GATTTACCTAACAAAGAGTTTTTTTAAAGGATGTAACCAAACCTTATTGC
TAAGCAAAAACATTAGtgtttaatgtttttttctctgtGTTAATTTGATT
CAAGATTAATAGGATCTAAaatttctttactttcttttaGGATCCAGATG
ATACTGATTCAATTGTGTACCGTGTTCTCAATCAGTTTGCAGAAATTGAG
CGATATATTTACTTCTTTGCTGATGCGCCACATCTGATAAAAACCGCAAG
AAATTGCCTTTGGTCTTCTGGGGCGGACTTCTCAAATAGACTTCTTTGGA
ATTCAGGTGACTTCATTTTGTGGTCACATATCAAGAGCATGTACTTTGAG
GATGTTGAAAATGGACTCCACATGTCACCAAAACTAACAACAGATCACAT
CATGTTGACCTCGTACCCCAAGATGAGAGTTTATCTTGCAGCTCAAATTC
TCAGCGATTCAGTTGGAAAAACCCTTAGAGACTTTGGACCAAAGGCAGCA
AGATCAACAGCAGAATTCTGTCTCAAATTCGACCAATTTTTTGACTGCTT
CAATGTACGAAACACTGAAGAGGGCAATTTAAACATAAAGCCATTTCTTG
ACCCTTACAGAAAGGATAACCTCACTGATCGGTTCGActttttagacaat
tttttaGAAGACCTTTCTGAATGGAAAGAAAGTGTTGATACCCGTCAAGG
AGATTTTACACCCACGCAAAGAAACAACATGTTTTTGTCGTTACCAACAT
ATAATGGAGTGCAAATAAGCATAAAATCGCTGAAAGAAATTGTACCATAT
TTGTTGGATAATGGTTTTGAGTATGTTTTGTCAGAGAGATTTTGCCAGGA
TgactttgaaaattatttcgGTCGGCAACGTGCAATTGGACGCAGGAAAG
ACAATCCTAATGCTGCTGCTACTATAAAGAACGATTTAGCGATTGCAGGA
GCCAATTGTATCGGTACTATAGACAAAAGTATTCCAGAAACTCctttaaa
aaagatgaaaaagtgacttaaaattttctaatttactcatttttaactaa
ttttaaattttgtattGATACTTGTAAATGTGTAAACATAGCTTTCAACT
TTTATTATAC Run BLAST on NCBI protein sequence of TCONS_00043030-protein >TCONS_00043030-protein ID=TCONS_00043030-protein|Name=TCONS_00043030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MYFEDVENGLHMSPKLTTDHIMLTSYPKMRVYLAAQILSDSVGKTLRDFG
PKAARSTAEFCLKFDQFFDCFNVRNTEEGNLNIKPFLDPYRKDNLTDRFD
FLDNFLEDLSEWKESVDTRQGDFTPTQRNNMFLSLPTYNGVQISIKSLKE
IVPYLLDNGFEYVLSERFCQDDFENYFGRQRAIGRRKDNPNAAATIKNDL
AIAGANCIGTIDKSIPETPLKKMKK Run BLAST on NCBI transcript from alignment at sc0003865:3285..4592+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043030 ID=TCONS_00043030|Name=TCONS_00043030|organism=Clytia hemisphaerica|type=transcript|length=1308bp|location=Sequence derived from alignment at sc0003865:3285..4592+ (Clytia hemisphaerica)
GATTTACCTAACAAAGAGTTTTTTTAAAGGATGTAACCAAACCTTATTGC
TAAGCAAAAACATTAGtgtttaatgtttttttctctgtGTTAATTTGATT
CAAGATTAATAGGATCTAAaatttctttactttcttttaGGATCCAGATG
ATACTGATTCAATTGTGTACCGTGTTCTCAATCAGTTTGCAGAAATTGAG
CGATATATTTACTTCTTTGCTGATGCGCCACATCTGATAAAAACCGCAAG
AAATTGCCTTTGGTCTTCTGGGGCGGACTTCTCAAATAGACTTCTTTGGA
ATTCAGGTACATTTGTTTTACCTGGCATGATTTTCAAGATTCTAAGAAAC
AAGGCATGTCTTTTCaagaatgtaaaaaaaaaacataaaatgtaaCTCTT
TTTGCCTGAGTGATCCCTCTGGCTATAatctatttggaaaaattaaggtt
attttttatgttattaaatgttttttgataaacattttttctctCTCACT
TCAGGTGACTTCATTTTGTGGTCACATATCAAGAGCATGTACTTTGAGGA
TGTTGAAAATGGACTCCACATGTCACCAAAACTAACAACAGATCACATCA
TGTTGACCTCGTACCCCAAGATGAGAGTTTATCTTGCAGCTCAAATTCTC
AGCGATTCAGTTGGAAAAACCCTTAGAGACTTTGGACCAAAGGCAGCAAG
ATCAACAGCAGAATTCTGTCTCAAATTCGACCAATTTTTTGACTGCTTCA
ATGTACGAAACACTGAAGAGGGCAATTTAAACATAAAGCCATTTCTTGAC
CCTTACAGAAAGGATAACCTCACTGATCGGTTCGActttttagacaattt
tttaGAAGACCTTTCTGAATGGAAAGAAAGTGTTGATACCCGTCAAGGAG
ATTTTACACCCACGCAAAGAAACAACATGTTTTTGTCGTTACCAACATAT
AATGGAGTGCAAATAAGCATAAAATCGCTGAAAGAAATTGTACCATATTT
GTTGGATAATGGTTTTGAGTATGTTTTGTCAGAGAGATTTTGCCAGGATg
actttgaaaattatttcgGTCGGCAACGTGCAATTGGACGCAGGAAAGAC
AATCCTAATGCTGCTGCTACTATAAAGAACGATTTAGCGATTGCAGGAGC
CAATTGTATCGGTACTATAGACAAAAGTATTCCAGAAACTCctttaaaaa
agatgaaaaagtgacttaaaattttctaatttactcatttttaactaatt
ttaaattttgtattGATACTTGTAAATGTGTAAACATAGCTTTCAACTTT
TATTATAC Coding sequence (CDS) from alignment at sc0003865:3285..4592+ >TCONS_00043030 ID=TCONS_00043030|Name=TCONS_00043030|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0003865:3285..4592+ (Clytia hemisphaerica)
ATGTACTTTGAGGATGTTGAAAATGGACTCCACATGTCACCAAAACTAAC
AACAGATCACATCATGTTGACCTCGTACCCCAAGATGAGAGTTTATCTTG
CAGCTCAAATTCTCAGCGATTCAGTTGGAAAAACCCTTAGAGACTTTGGA
CCAAAGGCAGCAAGATCAACAGCAGAATTCTGTCTCAAATTCGACCAATT
TTTTGACTGCTTCAATGTACGAAACACTGAAGAGGGCAATTTAAACATAA
AGCCATTTCTTGACCCTTACAGAAAGGATAACCTCACTGATCGGTTCGAc
tttttagacaattttttaGAAGACCTTTCTGAATGGAAAGAAAGTGTTGA
TACCCGTCAAGGAGATTTTACACCCACGCAAAGAAACAACATGTTTTTGT
CGTTACCAACATATAATGGAGTGCAAATAAGCATAAAATCGCTGAAAGAA
ATTGTACCATATTTGTTGGATAATGGTTTTGAGTATGTTTTGTCAGAGAG
ATTTTGCCAGGATgactttgaaaattatttcgGTCGGCAACGTGCAATTG
GACGCAGGAAAGACAATCCTAATGCTGCTGCTACTATAAAGAACGATTTA
GCGATTGCAGGAGCCAATTGTATCGGTACTATAGACAAAAGTATTCCAGA
AACTCctttaaaaaagatgaaaaagtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043030-exon-sc0003865-1491911889:3285..3590 | TCONS_00043030-exon-sc0003865-1491911889:3285..3590 | Clytia hemisphaerica | exon |
| TCONS_00043030-exon-sc0003865-1510915933:3285..3590 | TCONS_00043030-exon-sc0003865-1510915933:3285..3590 | Clytia hemisphaerica | exon |
| TCONS_00043030-exon-sc0003865-1575043694:3285..3590 | TCONS_00043030-exon-sc0003865-1575043694:3285..3590 | Clytia hemisphaerica | exon |
| TCONS_00043030-exon-sc0003865-1491911889:3789..4592 | TCONS_00043030-exon-sc0003865-1491911889:3789..4592 | Clytia hemisphaerica | exon |
| TCONS_00043030-exon-sc0003865-1510915933:3789..4592 | TCONS_00043030-exon-sc0003865-1510915933:3789..4592 | Clytia hemisphaerica | exon |
| TCONS_00043030-exon-sc0003865-1575043694:3789..4592 | TCONS_00043030-exon-sc0003865-1575043694:3789..4592 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003865 | supercontig | sc0003865:3285..4592 + |
Blast
The following BLAST results are available for this feature:
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