TCONS_00043010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043010
Unique NameTCONS_00043010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1103

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043010 ID=TCONS_00043010|Name=TCONS_00043010|organism=Clytia hemisphaerica|type=transcript|length=1103bp
atactttatACTTGTATACCAGTCAATGTTCTACCAAAAATGGTGAGAAA
TAAATAAGGAGAAATGGTATCAGAACTGGAAGAGTTAAGAACTCTTTAAA
CCTTTTTGTATCATTTCAGCTATATGAAAGTTTACAACGGGATCACGTGG
TCATGAAACAAAATATGTATAAACAGGACGACGAGCTAAGTATGATTACT
TTTTCTGAACTTGACGATAAGTGTATGGACGTCTTTGATAAAATGGAATT
GATGGAATCGGCTGCCGTCAAATTAATACACAGATCATCATCTGTTGAAG
ACGAAGTGGTGGATGACGGGATTGATTTGAAACATTCCGAAGAAACACTG
TCAACTAATGGTGGTCATGTATTGCCAAATGGTGGCCATCGTGTGTTGCC
GAAACCGAACCTTGAAGGTCACTTTCAAAagatGGACATCAATAAAGCGG
CAAAGCAAACAGACAATAGTTTCACGACGTATACAACAGAAGACTTAGGA
GAAATGACGACTTCAGAATTGAAAGGGCAAGACCAGTCATCGTTCACTCT
CCTCATGGAGCGAAAGGATAGTGGTAATGTGCAGGATGAGGAGATGTCAC
CGACAGCACGTTTACAGCATTTGTTGACAGAATCACGAAAGATGGTCAAA
ACATTAGAAGAATCTCCAGATCTATCATCTATCCATTCGTCACCAAATAA
CCTGTTCCTGGATAATAAAGAGATTTAAGAGAAGGAAAAGGAGAGGAAAT
TCATAGTTCAGAACGTTCAAACGACAACCTGACTCGGGATCGACTTTCGC
ATGAAATGGGATGAGCCTACAAGAcgacagttgacgctctctaattcgat
tttcaaggggaattggatcttcattgaataagggagcgtatcgaatggtA
GAGCGTTTTTTATGAGAgttttcttgttgacggtgactttcaatattatc
gaataacggagcgtatcgaatatagtcgcgcggctgaggtcgaaaaccgt
ttcatttcgtgatacatcttttagattccaaaaaaaacaacggaaactcg
cgaattagtatgtgtagattacaaaatcaaaaagtttccacgatattatc
gtg
Run BLAST on NCBI

transcript from alignment at sc0003851:119..3664+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043010 ID=TCONS_00043010|Name=TCONS_00043010|organism=Clytia hemisphaerica|type=transcript|length=3546bp|location=Sequence derived from alignment at sc0003851:119..3664+ (Clytia hemisphaerica)
atactttatACTTGTATACCAGTCAATGTTCTACCAAAAATGGTGAGAAA
TAAATAAGGAGAAATGGTATCAGAACTGGAAGAGTTAAGAACTCTTTAAA
CCTTTTTGTATCATTTCAGCTATATGAAAGTTTACAACGGGATCACGTGG
TCATGAAACAAAATATGTATAAACAGGACGACGAGTAAGATAGTTTTTCC
ATTAATAATCCATTAATATAAAATGAATCTTAAAACAAAGTTATGATAAG
ACAATCTTTCGCGACCATTTTATTTCACTCTCGTTTTTTTCCCGTAGGCT
AAGTATGATTNcaagtaaccattcaaatagtatttatttgacatattttg
agttttgtttagaaatatttcgcggatgaggcccttccaaatttccattg
ggatttaatttaatcctcgcgaaagtttatcccattaaagtaatgtttta
cgttttttaagTGTTTAGTacataaatcaaaatttctgtGATATNTAGGC
TAAGTATGATTACTTTTTCTGAACTTGACGATAAGTGTATGGACGTCTTT
GATAAAATGGAATTGATGGAATCGGCTGCCGTCAAATTAATACACAGATC
ATCATCTGTTGAAGACGAAGTGGTGGATGACGGGATTGATTTGAAACATT
CCGAAGAAACACTGTCAACTAATGGTGGTCATGTATTGCCAAATGGTGGC
CATCGTGTGTTGCCGAAACCGAACCTTGAAGGTCACTTTCAAAaggttat
tttttttcaaattctagtTCTACGATTTTAGCTCTAAAttatattttgtt
gaaaaaactaATTTACTGTTCGgataaaaattagttccctaaaACTTACT
GTAAGCTGATATATTACCTATTTTAATTTCGTCACTCTTCTTTATATgat
atgaaaaatagaaaaagttagaaaagatagaatcactgattgaaaataGC
CGACAAGTAAGAAAATATGGTCTGAGTCTGATTTCTCCCCTTTCCTGTAT
CTTTGAAACATATTGACGAAATGAGAAAGGGTGGTCGAACTAGACGACGT
TATCTAACCATACTcaaatgatctttttatagatGGACATCAATAAAGCG
GCAAAGCAAACAGGTAATATTATTTTTGCCAGTTTTTCATTAGTCAAATA
GTTTAATTTATGACAAAAACGAGTTCATTTTGTGTCATTGTGCcttttta
tttctcatttttttgatTTACGAGGAACTCTTACAAGGAATAAATCGACT
TTTGTGCTTTGTATTATCAATGTTTCTTACTTTCAGACAATAGTTTCACG
ACGTATACAACAGAAGACTTAGGAGAAATGACGACTTCAGAATTGAAAGG
GCAAGACCAGTCATCGTTCACTCTCCTCATGGAGCGAAAGGATAGTGGTA
ATGTGCAGGTAAGCCTAATGAGACACTTTTCACACGCTCAGATTTTAGGT
TATGAGTTCAAACGGctttgacttttattttgtaGTTCATAAATGTTTCA
AGACTTGTGCTCGTTGTTTTTGACAATCCAAGgatgttttttaaagtttt
ttcctCATTAATTTTCGAGTCATGAAAAACTTTGATTATTTATCTGAAAA
ACGTTGATTCTTTTATCTGAAAAACGTTGAttctgttttgaaattgaacT
ACCCAATCGGCGCTTTTTAAACTGATCCTTTGCTTACACCGGTTCCTTTT
ACGCCTGTCTTGTCCGCCACTCCGCTACTTTCTAAGTTTGAGCCTGCTCC
AGCAAGGAACGTTCATATAAACGCCAAAACCTGTGAAACAATCACTGAGC
AAACTTCAGGAAAGTCTTAAAAAACACTCCATGATATGCGAATGACTata
attacatgtttttcttttcataagcataacgtttatNTGATATGCGAATG
GCTataattacatgtttttcttttcataagcataacgtttataaacaTAC
TAAGACCTGGATTTGCTGAAAAATAAAGCATATCATTAGCTTAGCAATGA
GCTTTGGtcattgaacaaattttggTCATTGGGAGAACAGAATTGCAGGA
TTCCTAATTTTCCAAGAGATTGAGCCTTTGGTCATGTGGACGACGATATA
TACGTAGAAGAAATTCCTTCATCACTTGATGATcgtcaacaatatttttt
aataactttCTTACATAGGATGAGGAGATGTCACCGACAGCACGTTTACA
GCATTTGTTGACAGAATCACGAAAGATGGTCAAAACATTAGAAGAATCTC
CAGATCTATCATCTATCCATTCGTCACCAAATAACCTGTTCCTGGTAAAT
ATCTACAACTCTAATGCCACTATCTACCACTTATTAGGACACTTTACTTT
TGAAACAATTTCTCAGCACCCATCATTAATTAAAAATCTTTGATTATTCT
TCTCGAAAATATCTTCCCAATGGTTTACAACTTTTTAATATAACTTGGAA
AATGTCAAAGCAGTAAAATGAAttgtcaaaataatttattcgCATTAATA
GGAGGAGGACCCATTAAATTGGAAAAACAACGGTAAAAGAAATTTCCACT
CTGTATTAGATCTAGGTTAATGTAGCTTAAaccaaatacacgtttttttt
ttttaagaaacatgaggctcagaatgcctaaaaactaagaaacatctaag
aaacatgttgaggctgagaatgagaaaataacattttttaattaggtttt
tttaagaaccttcaaatccagcctttcataaggctgattatgtcaaaaag
tttagaaacatgtaagaaacatttaagactcaaaaggccgatttcttaag
aaacattgaggctgcttggtagaactagttttttaaaaaaaaaaaaaacc
cggtttttaAAAACTTTCCGCAATTCccccaaaaaaggtacccctttttt
tttttttaagaaacattgaggctgcttggtagaactagttttttaaaaaa
aaaaaaaacgtgtatccttTTTCGGTGAAGAGCTGATATGTTTGTAGAAC
CGTGTTTTTGTTTATAGGATAATAAAGAGATTTAAGAGAAGGAAAAGGAG
AGGAAATTCATAGTTCAGAACGTTCAAACGACAACCTNAAAAAACGTGTA
TCCTTTTTCGGTGAAGAGCTGATATGTTTGTAGAACCGTGTTTTTGTTTA
TAGGATAATAAAGAGATTTAAGAGAAGGAAAAGGAGAGGAAATTCATAGT
TCAGAACGTTCAAACGACAACCTGACTCGGGATCGACTTTCGCATGAAAT
GGGATGAGCCTACAAGAcgacagttgacgctctctaattcgattttcaag
gggaattggatcttcattgaataagggagcgtatcgaatggtAGAGCGTT
TTTTATGAGAgttttcttgttgacggtgactttcaatattatcgaataac
ggagcgtatcgaatatagtcgcgcggctgaggtcgaaaaccgtttcattt
cgtgatacatcttttagattccaaaaaaaacaacggaaactcgcgaatta
gtatgtgtagattacaaaatcaaaaagtttccacgatattatcgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026760XLOC_026760Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043010-exon-sc0003851-1491911889:119..302TCONS_00043010-exon-sc0003851-1491911889:119..302Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1510915933:119..302TCONS_00043010-exon-sc0003851-1510915933:119..302Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1575043694:119..302TCONS_00043010-exon-sc0003851-1575043694:119..302Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1491911889:617..863TCONS_00043010-exon-sc0003851-1491911889:617..863Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1510915933:617..863TCONS_00043010-exon-sc0003851-1510915933:617..863Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1575043694:617..863TCONS_00043010-exon-sc0003851-1575043694:617..863Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1491911889:1201..1231TCONS_00043010-exon-sc0003851-1491911889:1201..1231Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1510915933:1201..1231TCONS_00043010-exon-sc0003851-1510915933:1201..1231Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1575043694:1201..1231TCONS_00043010-exon-sc0003851-1575043694:1201..1231Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1491911889:1405..1526TCONS_00043010-exon-sc0003851-1491911889:1405..1526Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1510915933:1405..1526TCONS_00043010-exon-sc0003851-1510915933:1405..1526Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1575043694:1405..1526TCONS_00043010-exon-sc0003851-1575043694:1405..1526Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1491911889:2287..2412TCONS_00043010-exon-sc0003851-1491911889:2287..2412Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1510915933:2287..2412TCONS_00043010-exon-sc0003851-1510915933:2287..2412Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1575043694:2287..2412TCONS_00043010-exon-sc0003851-1575043694:2287..2412Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1491911889:3272..3664TCONS_00043010-exon-sc0003851-1491911889:3272..3664Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1510915933:3272..3664TCONS_00043010-exon-sc0003851-1510915933:3272..3664Clytia hemisphaericaexon
TCONS_00043010-exon-sc0003851-1575043694:3272..3664TCONS_00043010-exon-sc0003851-1575043694:3272..3664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003851supercontigsc0003851:119..3664 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.41294	1.72751	0.594157	0.59403	44.9859	40.9466	22.1162	21.6809	11.6668	15.4321	12.6754	10.9149	5.33657	4.5987	3.26501	4.58543	5.46248	5.4852	3.16163	2.01444	4.16725	3.4753	4.02266	3.92042	12.0918	8.53836	2.16107	1.64732	3.09662	2.96164
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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