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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042973 ID=TCONS_00042973|Name=TCONS_00042973|organism=Clytia hemisphaerica|type=transcript|length=2397bp GTTGAAGTATCAacacaaacttgttgtcaaagagattcaaCAGTAGgtga aaatacagtccagaAATCAACATTTGCATGTTTTGACCACTCGTTCCAAG TTAGGGCCGTTTACGATACcattgataaaaaatgtttaaaaaaactgTAT AAACTGTGTTGTAATTGCTTTTAGTAAAAGGTTTTACCTGTTTGAGACTA GCAGAAGCACTGAGATATCTGTGACATCCCCCATTTACTTTGGTTAACCT TGAGGGTGCAATTAATCTTGAATAACAACGATATAAATTTGATCCAAATC TAAATTTTGAAGCCATTTCAGGaggaattttggaaatttggcGTGTGGCT GTGCATTCACAGCTTCCTCTACCATTATAGGTAACCTGAAAGCGCACCTT CTTATCGGTCTTCCGCGGAGGTACTGAGCGAACGTTTCAGTGAAAAGcaa catcatcaaaagaatccgttctttcaatttttcaattcattttacTCAAG ATTATTTCATATTACTGACAAAATCACACTACCTATTCTTCATTTACCac ttttatctaaaaaatttccaagaaactaaagcgggaaaaatcaaaaaaat attcttgtaattttttctcgGGAGCTCCAAAGGGGAATGGCGCGAGGACA TCGAGAGGTCTGGACCCGAGCTGGGAAATTCCCCGAAAAATTCGATAGAT TTTAAAAGGAGAGGGTTGGCAAGGAAAGAAACTTCACAAGTCACAAGTTT ACATCTTTCACTACTACTCATCAACACTCAACATAACATTGAGATTCAAC GAATAAACTCTATCAAGACCTAAAGATGTCTAACCCAAAGGATAAATTAC CAAACCAACCTATTGACTCCGGAATTGGAGATAGTTTTGGACCTGATTTT GTTCCTGATGATGAAAAAAGACTGACAGAAGAACTTGAAAATCTGAATAT TCAAccatcaaatcaaatcaatactAAAACGTTGCTGGATCAAGCATTTA CTCCAGATGAAGAAAATGATACgTATCTCCATGTTTATATTGCCAAAAAC TCCCCAGACGAAGCTATGCAATTGATAGAAATGTGCCCAGACAAAAACTT ACTGAATATTCAAAATTATCTCGGACAAACTCCTCTACATGTTGCATCTT ACGTAAACTTAGATAAAGTAGCTATGTCTCTTGTACATCATGATGCAAAC TTGGAGATTCAAGATAGAGATGGAAAGAATGTATTTCATATCTGTGCAGA ACGTGGACATATTGAGACTTTGGAAAATGTGATAAAAATGGCATgtcaaa caaacaaaacaaattcaGCTTGGAATTTGTTGCACTCTACAGATTTCGAA GGTCAGGCACCATTCTTTTTGGCAGCATtgaataagaaaaaacaaatgtG TGTAACTTTGGCGAAACTGAATATTGATGTGAATCAAATTGATATCAAAA ATGGGAATACACCAATTCATGAGGCAATTCTTGAACAAAATATAGATTAT GATTTTCTGGAGTTTCTTGTCAAAACATGTAATTTGAACATTAACGCACA AAATTACGCTGGCATTACTGCACTACACTTAGCTGCAGGCCGAAATGATT CTAACACTTATTCAAAATTACTTGAGCTTGGAGCTAATGACAGTTTTGTG GACATCAGAGATTTTACACCCGAAATGTGTGGACCCAGTGATTCTATACA GCTTTTAAATGGGGTTTGATAAGAACACGCAAATTGAAATCACAGAGAAC GTCCATCTGCTTGGGCGATGAGTGATTATGTCTTTAATTGGTGGCAgtat ttgaatcaaaaaaattgattgatcAAAAGCCAAGGAAAACACgagtttaa aaattgaattttaaaaacaaaagtaaataGTAGAAGGATATTATATCTTT GGACATCAGAGAAGAGGATCTTGCACAGAGTAGATTCCTGAATCAGAAGG TTTTCAAAGCTTATTCAATTGATTTTGGAAATTGGAAGAGTTGGAAAATt taaattggctaaaaacatCTTTGTGTTGTATACTTGGAAAGTTTTTTATA GTATTATTTGTAAATAAGTTTTTATTAATACGATTTTGTAAATGCACAAC AGTGACATTCAGGTTATTGACctgttgaaattaaaaagaaaattcaaagg aaaattaTCTGCTTTGAAACAGTCCCACAAATCCAAAGCCTCTAACAAAC TTGAAACAAAATAGTCCAATCAAAAGTAAAAGAttgttctttgaaatttt gagttttagtCCTAAATAATTGTCCTAAAAATATGATAGTCCGAACTCTT GTCAATTTTTGGGGACACAGTTTTTTATATAGATTAAGTCCAGAACAAGC GCAATTCTGTAGTGGCTGCCCaatctgttctttttttgaaatttaat Run BLAST on NCBI protein sequence of NF-kappa-B inhibitor protein >TCONS_00042973-protein ID=TCONS_00042973-protein|Name=NF-kappa-B inhibitor protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MSNPKDKLPNQPIDSGIGDSFGPDFVPDDEKRLTEELENLNIQPSNQINT KTLLDQAFTPDEENDTYLHVYIAKNSPDEAMQLIEMCPDKNLLNIQNYLG QTPLHVASYVNLDKVAMSLVHHDANLEIQDRDGKNVFHICAERGHIETLE NVIKMACQTNKTNSAWNLLHSTDFEGQAPFFLAALNKKKQMCVTLAKLNI DVNQIDIKNGNTPIHEAILEQNIDYDFLEFLVKTCNLNINAQNYAGITAL HLAAGRNDSNTYSKLLELGANDSFVDIRDFTPEMCGPSDSIQLLNGV Run BLAST on NCBI transcript from alignment at sc0003824:191..3069- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042973 ID=TCONS_00042973|Name=TCONS_00042973|organism=Clytia hemisphaerica|type=transcript|length=2879bp|location=Sequence derived from alignment at sc0003824:191..3069- (Clytia hemisphaerica) GTTGAAGTATCAACACAAACTTGTTGTCAAAGAGATTCAACAGTAGGTGA
AAATACAGTCCAGAAATCAACATTTGCATGTTTTGACCACTCGTTCCAAG
TTAGGGCCGTTTACGATACCATTGATAAAAAATGTTTAAAAAAACTGTAT
AAACTGTGTTGTAATTGCTTTTAGTAAAAGGTTTTACCTGTTTGAGACTA
GCAGAAGCACTGAGATATCTGTGACATCCCCCATTTACTTTGGTTAACCT
TGAGGGTGCAATTAATCTTGAATAACAACGATATAAATTTGATCCAAATC
TAAATTTTGAAGCCATTTCAGGAGGAATTTTGGAAATTTGGCGTGTGGCT
GTGCATTCACAGCTTCCTCTACCATTATAGGTAACCTGAAAGCGCACCTT
CTTATCGGTCTTCCGCGGAGGTACTGAGCGAACGTTTCAGTGAAAAGCAA
CATCATCAAAAGAATCCGTTCTTTCAATTTTTCAATTCATTTTACTCAAG
ATTATTTCATATTACTGACAAAATCACACTACCTATTCTTCATTTACCAC
TTTTATCTAAAAAATTTCCAAGAAACTAAAGCGGGAAAAATCAAAAAAAT
ATTCTTGTAATTTTTTCTCGGGAGCTCCAAAGGGGAATGGCGCGAGGACA
TCGAGAGGTCTGGACCCGAGCTGGGAAATTCCCCGAAAAATTCGATAGAT
TTTAAAAGGAGAGGGTTGGCAAGGAAAGAAACTTCACAAGTCACAAGTTT
ACATCTTTCACTACTACTCATCAACACTCAACATAACATTGAGATTCAAC
GAATAAACTCTATCAAGACCTAAAGATGTCTAACCCAAAGGATAAATTAC
CAAACCAACCTATTGACTCCGGAATTGGAGATAGTTTTGGACCTGATTTT
GTTCCTGATGATGAAAAAAGACTGACAGAAGAACTTGAAAATCTGAATAT
TCAACCATCAAATCAAATCAATACTAAAACGTTGCTGGATCAAGCATTTA
CTCCAGATGAAGAAAATGATACGTAAGTTTATTACTTAATTCAACCAATA
TTGTAATCTTTGTCTGAAGTTGTCTGATTCTTTGGTGTGTTGTTGTCTAC
TTTCAGTTTCAAAGAAACAGCCTGCCTCCCAATATGGCCCATTTATTTTT
ATTGGCTGTGCTATAATTTTTCCTTTTTTTGTTTTAGGTATCTCCATGTT
TATATTGCCAAAAACTCCCCAGACGAAGCTATGCAATTGATAGAAATGTG
CCCAGACAAAAACTTACTGAATATTCAAAATTATCTCGGACAAACTCCTC
TACATGTTGCATCTTACGTAAACTTAGATAAAGTAGCTATGTCTCTTGTA
CATCATGATGCAAACTTGGAGATTCAAGATAGAGATGGAAAGAATGTATT
TCATATCTGTGCAGAACGTGGACATATTGAGACTTTGGAAAATGTGATAA
AAATGGCATGTCAAACAAACAAAACAAATTCAGCTTGGAATTTGTTGCAC
TCTACAGATTTCGAAGGTAACTACAATAATTAACAAAAAATCTCTGAATT
TTAAACAAGTTTGCGCTTGATTTTAAAAAGTCCTTATCNAATAATTAACA
AAAAATCTCTAAATTTTAAACAAGTTTGCGCTTGATTTTAAAAAGTCTTT
ATAAATTAGGGTTACGTTTAGTTTACAAGCAAGAGGGATAACCGTCAAAG
CCTCCAAGCAGTTGACTCTTTTCTTGTCTGAAATTCGTTGATTATGATTG
TCTAAAATACAATGCAAAGGCCATTGCAAATTTCTGACTTATATATTGTT
TTGATAAAAGTTTTTTATCTCTCTTCTTTTCAGGTCAGGCACCATTCTTT
TTGGCAGCATTGAATAAGAAAAAACAAATGTGTGTAACTTTGGCGAAACT
GAATATTGATGTGAATCAAATTGATATCAAAAATGGGAATACACCAATTC
ATGAGGCAATTCTTGAACAAAATATAGATTATGATTTTCTGGAGTTTCTT
GTCAAAACATGTAATTTGAACATTAACGCACAAAATTACGCTGGCATTAC
TGCACTACACTTAGCTGCAGGCCGAAATGATTCTAACACTTATTCAAAAT
TACTTGAGCTTGGAGCTAATGACAGTTTTGTGGACATCAGAGATTTTACA
CCCGAAATGTGTGGACCCAGTGATTCTATACAGCTTTTAAATGGGGTTTG
ATAAGAACACGCAAATTGAAATCACAGAGAACGTCCATCTGCTTGGGCGA
TGAGTGATTATGTCTTTAATTGGTGGCAGTATTTGAATCAAAAAAATTGA
TTGATCAAAAGCCAAGGAAAACACGAGTTTAAAAATTGAATTTTAAAAAC
AAAAGTAAATAGTAGAAGGATATTATATCTTTGGACATCAGAGAAGAGGA
TCTTGCACAGAGTAGATTCCTGAATCAGAAGGTTTTCAAAGCTTATTCAA
TTGATTTTGGAAATTGGAAGAGTTGGAAAATTTAAATTGGCTAAAAACAT
CTTTGTGTTGTATACTTGGAAAGTTTTTTATAGTATTATTTGTAAATAAG
TTTTTATTAATACGATTTTGTAAATGCACAACAGTGACATTCAGGTTATT
GACCTGTTGAAATTAAAAAGAAAATTCAAAGGAAAATTATCTGCTTTGAA
ACAGTCCCACAAATCCAAAGCCTCTAACAAACTTGAAACAAAATAGTCCA
ATCAAAAGTAAAAGATTGTTCTTTGAAATTTTGAGTTTTAGTCCTAAATA
ATTGTCCTAAAAATATGATAGTCCGAACTCTTGTCAATTTTTGGGGACAC
AGTTTTTTATATAGATTAAGTCCAGAACAAGCGCAATTCTGTAGTGGCTG
CCCAATCTGTTCTTTTTTTGAAATTTAAT Coding sequence (CDS) from alignment at sc0003824:191..3069- >TCONS_00042973 ID=TCONS_00042973|Name=TCONS_00042973|organism=Clytia hemisphaerica|type=CDS|length=2682bp|location=Sequence derived from alignment at sc0003824:191..3069- (Clytia hemisphaerica) GTCAGGCACCATTCTTTTTGGCAGCATTGAATAAGAAAAAACAAATGTGT GTAACTTTGGCGAAACTGAATATTGATGTGAATCAAATTGATATCAAAAA TGGGAATACACCAATTCATGAGGCAATTCTTGAACAAAATATAGATTATG ATTTTCTGGAGTTTCTTGTCAAAACATGTAATTTGAACATTAACGCACAA AATTACGCTGGCATTACTGCACTACACTTAGCTGCAGGCCGAAATGATTC TAACACTTATTCAAAATTACTTGAGCTTGGAGCTAATGACAGTTTTGTGG ACATCAGAGATTTTACACCCGAAATGTGTGGACCCAGTGATTCTATACAG CTTTTAAATGGGGTTTGAGTATCTCCATGTTTATATTGCCAAAAACTCCC CAGACGAAGCTATGCAATTGATAGAAATGTGCCCAGACAAAAACTTACTG AATATTCAAAATTATCTCGGACAAACTCCTCTACATGTTGCATCTTACGT AAACTTAGATAAAGTAGCTATGTCTCTTGTACATCATGATGCAAACTTGG AGATTCAAGATAGAGATGGAAAGAATGTATTTCATATCTGTGCAGAACGT GGACATATTGAGACTTTGGAAAATGTGATAAAAATGGCATGTCAAACAAA CAAAACAAATTCAGCTTGGAATTTGTTGCACTCTACAGATTTCGAAGATG TCTAACCCAAAGGATAAATTACCAAACCAACCTATTGACTCCGGAATTGG AGATAGTTTTGGACCTGATTTTGTTCCTGATGATGAAAAAAGACTGACAG AAGAACTTGAAAATCTGAATATTCAACCATCAAATCAAATCAATACTAAA ACGTTGCTGGATCAAGCATTTACTCCAGATGAAGAAAATGATACGTCAGG CACCATTCTTTTTGGCAGCATTGAATAAGAAAAAACAAATGTGTGTAACT TTGGCGAAACTGAATATTGATGTGAATCAAATTGATATCAAAAATGGGAA TACACCAATTCATGAGGCAATTCTTGAACAAAATATAGATTATGATTTTC TGGAGTTTCTTGTCAAAACATGTAATTTGAACATTAACGCACAAAATTAC GCTGGCATTACTGCACTACACTTAGCTGCAGGCCGAAATGATTCTAACAC TTATTCAAAATTACTTGAGCTTGGAGCTAATGACAGTTTTGTGGACATCA GAGATTTTACACCCGAAATGTGTGGACCCAGTGATTCTATACAGCTTTTA AATGGGGTTTGAGTATCTCCATGTTTATATTGCCAAAAACTCCCCAGACG AAGCTATGCAATTGATAGAAATGTGCCCAGACAAAAACTTACTGAATATT CAAAATTATCTCGGACAAACTCCTCTACATGTTGCATCTTACGTAAACTT AGATAAAGTAGCTATGTCTCTTGTACATCATGATGCAAACTTGGAGATTC AAGATAGAGATGGAAAGAATGTATTTCATATCTGTGCAGAACGTGGACAT ATTGAGACTTTGGAAAATGTGATAAAAATGGCATGTCAAACAAACAAAAC AAATTCAGCTTGGAATTTGTTGCACTCTACAGATTTCGAAGATGTCTAAC CCAAAGGATAAATTACCAAACCAACCTATTGACTCCGGAATTGGAGATAG TTTTGGACCTGATTTTGTTCCTGATGATGAAAAAAGACTGACAGAAGAAC TTGAAAATCTGAATATTCAACCATCAAATCAAATCAATACTAAAACGTTG CTGGATCAAGCATTTACTCCAGATGAAGAAAATGATACGTCAGGCACCAT TCTTTTTGGCAGCATTGAATAAGAAAAAACAAATGTGTGTAACTTTGGCG AAACTGAATATTGATGTGAATCAAATTGATATCAAAAATGGGAATACACC AATTCATGAGGCAATTCTTGAACAAAATATAGATTATGATTTTCTGGAGT TTCTTGTCAAAACATGTAATTTGAACATTAACGCACAAAATTACGCTGGC ATTACTGCACTACACTTAGCTGCAGGCCGAAATGATTCTAACACTTATTC AAAATTACTTGAGCTTGGAGCTAATGACAGTTTTGTGGACATCAGAGATT TTACACCCGAAATGTGTGGACCCAGTGATTCTATACAGCTTTTAAATGGG GTTTGAGTATCTCCATGTTTATATTGCCAAAAACTCCCCAGACGAAGCTA TGCAATTGATAGAAATGTGCCCAGACAAAAACTTACTGAATATTCAAAAT TATCTCGGACAAACTCCTCTACATGTTGCATCTTACGTAAACTTAGATAA AGTAGCTATGTCTCTTGTACATCATGATGCAAACTTGGAGATTCAAGATA GAGATGGAAAGAATGTATTTCATATCTGTGCAGAACGTGGACATATTGAG ACTTTGGAAAATGTGATAAAAATGGCATGTCAAACAAACAAAACAAATTC AGCTTGGAATTTGTTGCACTCTACAGATTTCGAAGATGTCTAACCCAAAG GATAAATTACCAAACCAACCTATTGACTCCGGAATTGGAGATAGTTTTGG ACCTGATTTTGTTCCTGATGATGAAAAAAGACTGACAGAAGAACTTGAAA ATCTGAATATTCAACCATCAAATCAAATCAATACTAAAACGTTGCTGGAT CAAGCATTTACTCCAGATGAAGAAAATGATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00042973-exon-sc0003824-1575043694:2048..3069 | TCONS_00042973-exon-sc0003824-1575043694:2048..3069 | Clytia hemisphaerica | exon |
| TCONS_00042973-exon-sc0003824-1575043694:1554..1882 | TCONS_00042973-exon-sc0003824-1575043694:1554..1882 | Clytia hemisphaerica | exon |
| TCONS_00042973-exon-sc0003824-1575043694:191..1236 | TCONS_00042973-exon-sc0003824-1575043694:191..1236 | Clytia hemisphaerica | exon |
| TCONS_00042973-exon-sc0003824-1510915933:2048..3069 | TCONS_00042973-exon-sc0003824-1510915933:2048..3069 | Clytia hemisphaerica | exon |
| TCONS_00042973-exon-sc0003824-1510915933:1554..1882 | TCONS_00042973-exon-sc0003824-1510915933:1554..1882 | Clytia hemisphaerica | exon |
| TCONS_00042973-exon-sc0003824-1510915933:191..1236 | TCONS_00042973-exon-sc0003824-1510915933:191..1236 | Clytia hemisphaerica | exon |
| TCONS_00042973-exon-sc0003824-1491911889:2048..3069 | TCONS_00042973-exon-sc0003824-1491911889:2048..3069 | Clytia hemisphaerica | exon |
| TCONS_00042973-exon-sc0003824-1491911889:1554..1882 | TCONS_00042973-exon-sc0003824-1491911889:1554..1882 | Clytia hemisphaerica | exon |
| TCONS_00042973-exon-sc0003824-1491911889:191..1236 | TCONS_00042973-exon-sc0003824-1491911889:191..1236 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0003824 | supercontig | sc0003824:191..3069 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00042973 vs. Swiss-Prot (Human)
Match: IKBA (NF-kappa-B inhibitor alpha OS=Homo sapiens GN=NFKBIA PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.521e-22 Identity = 77/274 (28.10%), Postives = 132/274 (48.18%), Query Frame = 1
Query: 814 QDLKMSNPKDKLPNQPIDSGIGDSFGPDFVPDDE-KRLTEELENLNIQPSNQINTKTLLDQAFTPDEENDTYLHVYIAKNSPDEAMQLIEMCP-DKNLLNIQNYLGQTPLHVASYVNLDKVAMSLVHHDANLEIQDRDGKNVFHICAERGHIETLENVIKMACQTNKTNSAWNLLHSTDFEGQAPFFLAALNKKKQMCVTLAKLNIDVNQIDIKNGNTPIHEAILEQNIDYDFLEFLVKTCNLNINAQNYAGITALHLAAGRNDSNTYSKLLEL 1629
Q+ M P+D L + + DS G D + D+E +++ +EL+ + ++P Q T E+ D++LH+ I M++I D LN QN L QTPLH+A N ++A +L+ + E++D G H+ E+G + ++ V+ +C T +S +L +T++ G LA+++ + L L DVN + NG T +H A+ QN D + L+K C ++N Y G + L GR + +L +L
Sbjct: 9 QEWAMEGPRDGLKKERLLDDRHDS-GLDSMKDEEYEQMVKELQEIRLEPQEVPRGSEPWKQQLT--EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV-GVLTQSCTTPHLHS---ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP--DLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 272
The following BLAST results are available for this feature:
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