NF-kappa-B inhibitor protein (polypeptide) - C. hemisphaerica

Overview
NameNF-kappa-B inhibitor protein
Unique NameTCONS_00042973-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042973-protein ID=TCONS_00042973-protein|Name=NF-kappa-B inhibitor protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MSNPKDKLPNQPIDSGIGDSFGPDFVPDDEKRLTEELENLNIQPSNQINT
KTLLDQAFTPDEENDTYLHVYIAKNSPDEAMQLIEMCPDKNLLNIQNYLG
QTPLHVASYVNLDKVAMSLVHHDANLEIQDRDGKNVFHICAERGHIETLE
NVIKMACQTNKTNSAWNLLHSTDFEGQAPFFLAALNKKKQMCVTLAKLNI
DVNQIDIKNGNTPIHEAILEQNIDYDFLEFLVKTCNLNINAQNYAGITAL
HLAAGRNDSNTYSKLLELGANDSFVDIRDFTPEMCGPSDSIQLLNGV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026731XLOC_026731Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042973TCONS_00042973Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 132..161
e-value: 2.4
score: 17.2
coord: 99..128
e-value: 3.6
score: 16.6
coord: 245..275
e-value: 28.0
score: 13.6
coord: 175..204
e-value: 91.0
score: 11.9
coord: 63..92
e-value: 200.0
score: 10.2
coord: 209..241
e-value: 0.061
score: 22.4
IPR002110Ankyrin repeatPFAMPF00023Ankcoord: 100..130
e-value: 0.016
score: 15.5
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 245..277
score: 9.965
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 99..131
score: 10.152
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 155..240
e-value: 1.3E-6
score: 28.8
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 217..288
e-value: 7.4E-12
score: 44.7
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 57..216
e-value: 2.0E-28
score: 98.6
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 63..277
score: 32.917
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 64..284
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableCDDcd00204ANKcoord: 61..195
e-value: 1.32925E-15
score: 70.105
NoneNo IPR availableCDDcd00204ANKcoord: 94..266
e-value: 5.09992E-20
score: 82.4314

Blast
[Close]
BLAST of NF-kappa-B inhibitor protein vs. Swiss-Prot (Human)
Match: IKBA (NF-kappa-B inhibitor alpha OS=Homo sapiens GN=NFKBIA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.862e-23
Identity = 76/270 (28.15%), Postives = 130/270 (48.15%), Query Frame = 0 
Query:    1 MSNPKDKLPNQPIDSGIGDSFGPDFVPDDE-KRLTEELENLNIQPSNQINTKTLLDQAFTPDEENDTYLHVYIAKNSPDEAMQLIEMCP-DKNLLNIQNYLGQTPLHVASYVNLDKVAMSLVHHDANLEIQDRDGKNVFHICAERGHIETLENVIKMACQTNKTNSAWNLLHSTDFEGQAPFFLAALNKKKQMCVTLAKLNIDVNQIDIKNGNTPIHEAILEQNIDYDFLEFLVKTCNLNINAQNYAGITALHLAAGRNDSNTYSKLLEL 268
            M  P+D L  + +     DS G D + D+E +++ +EL+ + ++P           Q  T  E+ D++LH+ I        M++I     D   LN QN L QTPLH+A   N  ++A +L+    + E++D  G    H+  E+G + ++  V+  +C T   +S   +L +T++ G     LA+++    +   L  L  DVN  +  NG T +H A+  QN   D +  L+K C  ++N   Y G +   L  GR  +    +L +L
Sbjct:   13 MEGPRDGLKKERLLDDRHDS-GLDSMKDEEYEQMVKELQEIRLEPQEVPRGSEPWKQQLT--EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV-GVLTQSCTTPHLHS---ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP--DLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 272
The following BLAST results are available for this feature:
BLAST of NF-kappa-B inhibitor protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IKBA3.862e-2328.15NF-kappa-B inhibitor alpha OS=Homo sapiens GN=NFKB... [more]
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