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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042972 ID=TCONS_00042972|Name=TCONS_00042972|organism=Clytia hemisphaerica|type=transcript|length=682bp
caagaatatttttttgatttttcccgctttagtttcttggaaatttttta
gataaaagtGGTAAATGAAGAATAGGTAGTGTGATTTTGTCAGTAATATG
AAATAATCTTGAgtaaaatgaattgaaaaattgaaagaacggattctttt
gatgatgttgCTTTTCACTGAAACGTTCGCTCAGTACCTCCGCGGAAGAC
CGATAAGAAGGTGCGCTTTCAGGTTACCTATAATGGTAGAGGAAGCTGTG
AATGCACAGCCACACgccaaatttccaaaattcctCCTGAAATGGCTTCA
AAATTTAGATTTGGATCAAATTTATATCGTTGTTATTCAAGATTAATTGC
ACCCTCAAGGTTAACCAAAGTAAATGGGGGATGTCACAGATATCTCAGTG
CTTCTGCTAGTCTCAAACAGGGCTGAAGAAGCTCATTTCATCTCAGAATC
AAGTTTCGGTGAAGCACACTTTCCACCAAAATCGACACTCTGGCCACAAC
AGGTAAATTAAGTGGTCCCGTTGCTCTAAAATTGTCCCTGCACTTACCCT
AAGCCTATAAAATTACTACAATAATCATAACAGACTCTCTATCATTGTAA
ATTCAAGCAAAAAAACACCAGAATAGTGGAAAAACTGAGGCAAAACAGCC
CTGGGTTGTTTGAGCTAGAGATAGGCATGTAT Run BLAST on NCBI transcript from alignment at sc0003824:2463..5508+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042972 ID=TCONS_00042972|Name=TCONS_00042972|organism=Clytia hemisphaerica|type=transcript|length=3046bp|location=Sequence derived from alignment at sc0003824:2463..5508+ (Clytia hemisphaerica)
caagaatatttttttgatttttcccgctttagtttcttggaaatttttta
gataaaagtGGTAAATGAAGAATAGGTAGTGTGATTTTGTCAGTAATATG
AAATAATCTTGAgtaaaatgaattgaaaaattgaaagaacggattctttt
gatgatgttgCTTTTCACTGAAACGTTCGCTCAGTACCTCCGCGGAAGAC
CGATAAGAAGGTGCGCTTTCAGGTTACCTATAATGGTAGAGGAAGCTGTG
AATGCACAGCCACACgccaaatttccaaaattcctCCTGAAATGGCTTCA
AAATTTAGATTTGGATCAAATTTATATCGTTGTTATTCAAGATTAATTGC
ACCCTCAAGGTTAACCAAAGTAAATGGGGGATGTCACAGATATCTCAGTG
CTTCTGCTAGTCTCAAACAGGTAAAACCTTTTACTAAAAGCAATTACAAC
ACAGTTTATAcagtttttttaaacattttttatcaatgGTATCGTAAACG
GCCCTAACTTGGAACGAGTGGTCAAAACATGCAAATGTTGATTtctggac
tgtattttcacCTACTGttgaatctctttgacaacaagtttgtgtTGATA
CTTCAACCAGGtttatcattcaaacttttATATTCACCATTTCCATGCCC
CATCCacacaggaccctgccgacgcaccggactgtccggtgtatttgtcc
ggtggcaaaaagtatcctttcgctacaccggacgcaataagtccagtgtc
agtccggtgttgtatacagggaattttggacgccggacatttatgaaaca
aaaaaattaagaaacaccggacgcaccggactggtcatgttttgattgtc
cggtggaaaaaatatccttctccgacaccggacatccgacttccttaagt
ccggtgtagagattgtccggtggtaaaaagaattctcattttacaccgga
ctttcgcgtgtccggtgttccttaagtccggtgcgtcggcagggtcctat
ccACACAATCATGCAAAATCCTTTCAAAGGCATTTTGTAAGaacctgtac
gtttattttacaCATTTTGATGATTGTTTTTCCGTAATGGTCATAAATTT
AATGAGGTGATTAGCAATTTGATGCCTCACAAAGGTTGCTCATCTTGACG
CATATCTTTTTGTGTGCAGCTTTCCTCTTGAGACTtgttagcaactccag
aagatttttcaagttttaatttttttttcaaaatctatcctatcttgtag
agctttgaaaaagaaagaaaatgaggggtcataggcctccagaggataag
tggttgtaaagatattcaaattttagtgtcaaaattttgactaaaaatgt
caaaaaaaggttaggaaaatagcttggaaaaattcgaaaaatgtgtcaaa
aaagaaaaaaaAgaaattttccagtcatgcttcttaaattttgcatatct
ctttttctagtgtagctaaagacctcaaatttggagggagaattctttga
tggtgtcaaaatattattatataaaaatatttgtaaaatgtttagtatat
ttatcaaaataacgaaagatatatctttttttgaaaaaagaagacattNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGAAGAAAAGTtacaagggttcaaagttcacg
gaaaaatgaaacatttggtttgacgtcaacgatagttgcgtgacttctgg
agtcgctagaCTTGTGATGAGTTGTTGAGATTCCAGAGCGTGTGCAATTG
AATTGTGTGTGTCCGATATACAGATCTCACGATTTTCTGCAGAAGAAGAA
TGGACTATCTGTGTTGGAGTGTCGCATTTCATGTGTTTTTCCTCACAAAG
ATCTGTTCTTTTGTGGATGGAGTGAAAGCCTACCTGGTGAGAGAGCAGTG
TATTCACAATTGGGtcaattccagaaaaaaaacattacccccTAATGAAC
GacatcaatttttaaaataaatgttGGCACGGAATTTCAGgtaaacttta
aagagaaaatatcagaattccatgaattttacttaattttgcattaacct
ttagacaccgctgtttttaaaaacagcgcgcgctgctgccgctgtttttt
tcatgaaaatggaggtttcgcggaaaatgtcataaaatctgaaNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcccttttaaacctgactacacagcctcaaatcaaaacagttaaaattc
catgtttactattttttcacttttttttttttttgacaaattgaatgaaa
aaagtgggtacaaggtaaagattggtccctaaaaattattttgttttagt
ttatgttATAAACCACCATTGTGTGAAATTTCAGGGCTGAAGAAGCTCAT
TTCATCTCAGAATCAAGTTTCGGTGAAGCACACTTTCCACCAAAATCGAC
ACTCTGGCCACAACAGGTAAATTAAGTGGTCCCGTTGCTCTAAAATTGTC
CCTGCACTTACCCTAAGCCTATAAAATTACTACAATAATCATAACAGACT
CTCTATCATTGTAAATTCAAGCAAAAAAACACCAGAATAGTGGAAAAACT
GAGGCAAAACAGCCCTGGGTTGTTTGAGCTAGAGATAGGCATGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042972-exon-sc0003824-1491911889:2463..2882 | TCONS_00042972-exon-sc0003824-1491911889:2463..2882 | Clytia hemisphaerica | exon |
| TCONS_00042972-exon-sc0003824-1510915933:2463..2882 | TCONS_00042972-exon-sc0003824-1510915933:2463..2882 | Clytia hemisphaerica | exon |
| TCONS_00042972-exon-sc0003824-1575043694:2463..2882 | TCONS_00042972-exon-sc0003824-1575043694:2463..2882 | Clytia hemisphaerica | exon |
| TCONS_00042972-exon-sc0003824-1491911889:5247..5508 | TCONS_00042972-exon-sc0003824-1491911889:5247..5508 | Clytia hemisphaerica | exon |
| TCONS_00042972-exon-sc0003824-1510915933:5247..5508 | TCONS_00042972-exon-sc0003824-1510915933:5247..5508 | Clytia hemisphaerica | exon |
| TCONS_00042972-exon-sc0003824-1575043694:5247..5508 | TCONS_00042972-exon-sc0003824-1575043694:5247..5508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003824 | supercontig | sc0003824:2463..5508 + |
Blast
The following BLAST results are available for this feature:
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