TCONS_00042968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042968
Unique NameTCONS_00042968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1154

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042968 ID=TCONS_00042968|Name=TCONS_00042968|organism=Clytia hemisphaerica|type=transcript|length=1154bp
CTAGCTTCACGTATGCAATTGGGTTGGCCAACTGACGGATTACGTTTCGA
CGGAGAGTTGGAATAACGAGGAAACGAAGCGTAAAGTTTTCGCTATCGAT
TGTGAGATGAGAAAGAAAATCGCTTCACACAACCCTGGAAAAACAGTGAT
GTCGTTTTGGTTGTTGAAGACAAAGAGCTCCATGTTCATTCGATTACACT
GTCAATGGTTTCTCCTGTTTTTGAAGCCATGTTTAATGGAAATTTCAAAG
AAGCACAAACAAAGAGAGTTGTTTTGGAAGGAAAACCATACGATACATTT
TTATACATGCTGAGGATGGTTTACCCTTTTGAAGACGTTTTCTTGGAGGA
TGAAATTTTGTATTGtgaaggatgttccaccgtcaaGAAAGGTCAACGAA
AAGATTTCACAAAAGAACCACCACGTTTCGGATATTATCATGGTTGCTCT
gctgaatttaaagaaaaagAAACAGCCGAGCTTATAGAGTCAGAAGATCT
TAAAACGGCCTGCCTCGATTATATCAAACGCGATTTGTATTCATTATCAA
ATGTTGATAAATTGCTGGAAGGAAGAAGTTTCACACTTAAGACCGAGATG
AAAATCAAGTAACAGCTCTTTGAGAAACTTTTGGGAAGGTTGAAAGGTTA
TTGCACCCATTATAATTACACCAGTAGCGCAGAAGAGTGTAAGAAGGAGA
TAACGAAATTAGGTGAAGAATTTCCGTCGATGGCACTTAAAGAAGGAAGT
ACATTTTGTCAATGTCAAAGGTTTGGGATTCGGATCTCCAGAAAtggaag
atttaaaaaaagaatatttatgTAGCttaaatattttagattttttgccT
TATTggtgtaaatgggtttttgaaACAGTTTGTTGGCACAGCCACAGTTC
CAGAGAAACAATATCATTCGTGGTGGACATGGCTTTACTGCTTCTTATTA
TATATTCAGTATTcattttctcatcattttttacGGACTAATATTTTGAA
GCATCGTGAATTGCATGTTGCTCTTACTACAGCGTgtcgagaaaaaaaat
gagtcaaaaaagagTTCATATAATATCTAAAGACGTATTGGTAACAAGCG
TTGAAATCGTTTTGTATTAAACGTGTAAAAGTAGGGGGTGTATGATGAAA
Tggc
Run BLAST on NCBI

transcript from alignment at sc0003820:14..6598+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042968 ID=TCONS_00042968|Name=TCONS_00042968|organism=Clytia hemisphaerica|type=transcript|length=6585bp|location=Sequence derived from alignment at sc0003820:14..6598+ (Clytia hemisphaerica)
CTAGCTTCACGTATGCAATTGGGTTGGCCAACTGACGGATTACGTTTCGA
CGGAGAGTTGGAATAACGAGGAAACGAAGCGTAAAGTTTTCGCTATCGAT
TGTGAGATGGTAAGAGCGAACACTTTGTAATTCGTTTATCTATCGTTTTC
TGTTTATTCGCCTTGTTACTGCAAAAGTTTTTATGTTTGGTTCAaacatt
atggaagcaaacattcGATTTCCGTAAGGGGTCGCCtttacagattcgaa
cgttttctTCGTTCTATGAATGAGTTACGTGACTTAACAAAACACGCAAA
CCTAATGGTGGAAATTACCTAGTTAGTTTAGTAATATTCTTAAGAGACGA
TATCTCTGAAAAGAATTTGATCTGTTTGGAATTGTCAGAGGAATCGTTAG
agatttttcaagaactttttgccaaaattattCCTCCAACGCTGGTTTCT
CTTTAGCTCAGTCGGTAAAGCGCTCGCATAACTCGAAAATACTTAGATGC
CTATATATAATCCTCACGCGAGGAGTTTTTAGAActaatttcttagtttt
taattGATTCAATGTAATTAATTCTGGATTATCATCAAAGCGATTATCAG
ATGAATAAAAGAATGCGATTCCGATAATCAAAGAAATAGTCCATAAAAGA
TTTCGCAGATGGGACGCGTATGACAACCATTATGATAGTCCCCTagtccg
aatagggttaagggctctgaccatagtgaatttttcataattgccgtgtt
taaaatgtgttttctgactgatgtaaccaacaaaactatggcatgttata
cattttctgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNaaatttgatgaagaagaaaatgaagacttttgcga
ggaagagtatttcaactttgaagagcttagtttcggcgaagaaaaaacat
tttgaaaatcttttcgcagtagatggtgtatcttttaccgaacaataaaa
atttttgcggaaaatttttgtaaatgcttttTTGTCTCGAAATATGcaaa
atagtgttttttcatcaatttttcatctggattttgcttaaaaaaacagt
cgtAACTTTTgtcacatctttttagaaaaattttccgcaaaatttaaaat
agttcaattctttgcggacagtgtaaagaaattttgaaacaaaaaagtta
attacccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaaggcaattctttgttaaaagtgttaaggaacct
gaaatataacttttatgttcaaataccaaaatcaatttttggactatggt
cagagcccttaataatGGAGCACAGAAGACCCAATCTCGAAAATCGCCCT
CATAGCTCGCCCCAATTTCGTTCCAACTACCACGAGACTGGTTGAAATGA
ATAACGGACCCTGGTAGTGACGGAATGTGTGACGCCAAACAGTTAGCAAT
ACCACTTCGGAAAAATCCATTTGATTTTCGATTTACAAATTAGCtgtttt
tattgcttttttaaaATACCAATTTCGAAAATTGCCCTCATagctactct
gtaccagagtgtatctcacgtttatcgcttctcgtagtacactctgtgcg
cattgtctgtttgataaaaaagttcccgtacggagacctgcGATGAAGCT
TGATTTATAGAGaacaacacttctctcatcgtctcccctctctcaccaac
actccatcgcagcggtcggtttgaaaaaactcaaatgagaaaagacaata
acaacagacactctacggcaatgaattttaaaatcaaccgtagatactgg
gtctgtgtacagacaacccCAAAGCTCGCCCCAATTTCTTTTGAACCACT
ACAAAACTGGTTGAAAAGAATGGCTGACCCTGGTGGTAACGGAATGAGTG
ACGCTGAACAGATAGCAGAAGATAATCAGCAATACCAGCTCGGAAAAATC
CATTTGATTCTCGATTTTACAAATTAGCTGTTTTTATGGGACTTTTAAAA
GACGGTTTTTACTATtaccatttttggacctaccccggtgggctgtaggt
cctataaattaacctctgttcgtccgttcgtccgttcgttactagctttt
ctcgggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatgcattttcgctaaac
gatatattttctgactgatttttttctcctcgcattgctatctaactttc
atcatcaggtaggtccattcagcatctagcttgttaaatatcaattctta
taaaaagtagcAAAGATTTAATGtcaaaaaaggggaaaattCTTAGAAAG
CTATTATATGTGTATCTTCACATGATCAATCAAAAGAAGTCTTGCAATAT
GAATCGATTATGTGTGTATAGACATCGTTTTTAAAAGCAAGCTCATTTGT
TATGATGTTTTAAAGTAgagctttttttgttttgagttgtGTGTTTGTAA
GTTGTTTGAGTTATTTCTAAAGGCCTTGAGATTTGATTTGACGGTTCATA
CTATCTCTAATTATTTTTACACGAAATAAATTTATTAAATTGATATTATA
GTCGGCATTAAGGTTACAGAAAGAATGAGTTTATCCAATGAAGGAAAAAA
TATGCTAAAACTGATCATAGAGAAAGAAAATCGCTTCACACAACCCTGGA
AAAACAGTGATGTCGTTTTGGTTGTTGAAGACAAAGAGCTCCATGTTCAT
TCGATTACACTGTCAATGGTTTCTCCTGTTTTTGAAGCCATGTTTAATGG
AAATTTCAAAGAAGCACAAACAAAGAGAGTTGTTTTGGAAGGAAAACCAT
ACGATACATTTTTATACATGCTGAGGATGGTTTACCCTTTTGAAGACGTT
TTCTTGGGTAAGTTCTTTCAAGTTTTATAATgtgaaatgaaaaattagac
TTAAGTTTTTGCAGCCACCTTAAggggagaaattttggcgaaaagaaatt
taaatttatagttcatttgccaaaataaattctcgtcaaatttaattttc
tttcaatttagtctctgtttcttttttcagctaaataaaaatattgaaca
aaaattggtcgttcgccaaaatttcttctcgccaaatttagaaattttat
taaatcacCAAAATAAATTCCGGCATATTGCACCAACATTGGTGAATGgg
ctcattcgccaaaatttcttctcttaaggtatttctaaagttttgaaGGA
GGAAACTTTGACTAAAActgaaatctaaaaataaagtcaTTTAGCATTTT
GATTTCTACAGTAAAACGAGAGCACCATTGATTATGCCGTGAAGTTTCCA
TGGGGAACGCAAACACGCACGGGCAACGCAAAGTCGAATTatggagacat
tcgagttatggaggttcaAATACAAGAGGCTCAACTGTATAACTCTGTGA
TGAAAAAAACGATAAGGGAagcatttttcaaaactactttgtCACCATGT
CTAATTCTTACAGATATTGTCTCGACTTTTTTCAATTAATAGAGGATGAA
ATTTTGTATTGtgaaggatgttccaccgtcaaGAAAGGTCAACGAAAAGA
TTTCACAAAAGAACCACCACGTTTCGGTATgtaaaattgagtttttgttt
tcatgtgTTAAAATCACCAGCGACAGTTTGGAATTCTCAAGAACCGTATT
TTTGAACGGTGTAAATTGTCTTGTAGCGTGTTGTCTAAATTTCTTGGATT
CTATATTTTCAGGATATTATCATGGTTGCTCTgctgaatttaaagaaaaa
ggtACGTCGGAGAACTGGAAAAGTGCACGGGGAAATCCATTCTCTTTCTA
ATATGGAAAGATCCTCTTATTCTGAAttcaataaatacaaaatacgTTTT
TGACACTTATTTCGGggaaaatttcctttttctttattGTTTTGTCGTAA
AGTTATTCTTTGTAGCattcaaaatttcttgaagccttgggatgtccTTA
ACTTTTTAAGCTTTAAGTAATATGTTCTAAAAAatacatattcttatttt
caccattttgtcagCAATTTTGTAttatttctaagaaattggatgtttta
agAGTCcattaaagccttaaaattccCTTAGCTTTTTCTTAATATCTTGG
TCATCGAAGCATCCTGTTCTTTtgtagtttgctcttataaaaaacgatat
CTCTTTTATTTTCACGCACGTGCAAGCATTATATTCTCTAACAAACGAAT
ACTTGATTGACACAATCACCAAGAAAATCAACGAAGAATTGTCACGCCAA
AGCAAGCAAATGTACAACTCCTCACATGCCCTTCATCTTCTAGAAACAGC
CGAGCTTATCGAGTCAGAANACAACTCCTCACATGCCCTTCATCTTCTAG
AAACAGCCGAGCTTATAGAGTCAGAAGATCTTAAAACGGCCTGCCTCGAT
TATATCAAACGCGATTTGTATTCATTATCAAATGTTGATAAATTGCTGGA
AGGAAGAAGTTTCACACTTAAGACCGAGATGAAAATCAAGTAACAGCTCT
TTGAGAAACTTTTGGGAAGGTTGAAAGGTTATTGCACCCATTATAATTAC
ACCAGTAGCGCAGAAGAGTGTAAGAAGGAGATAACGAAATTAGGTGAAGA
ATTTCCGTCGATGGCACTTAAAGAAGGAAGTACATTTTGTCAATGTCAAA
GGTTTGGGATTCGGATCTCCAGAAAtggaagatttaaaaaaagaatattt
atgTAGCttaaatattttagattttttgccTTATTggtgtaaatgggttt
ttgaaACAGTTTGTTGGCACAGCCACAGTTCCAGAGAAACAATATCATTC
GTGGTGGACATGGCTTTACTGCTTCTTATTATATATTCAGTATTcatttt
ctcatcattttttacGGACTAATATTTTGAAGCATCGTGAATTGCATGTT
GCTCTTACTACAGCGTgtcgagaaaaaaaatgagtcaaaaaagagTTCAT
ATAATATCTAAAGACGTATTGGTAACAAGCGTTGAAATCGTTTTGTATTA
AACGTGTAAAAGTAGGGGGTGTATGATGAAATggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026728XLOC_026728Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042968-exon-sc0003820-1491911889:14..122TCONS_00042968-exon-sc0003820-1491911889:14..122Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1510915933:14..122TCONS_00042968-exon-sc0003820-1510915933:14..122Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1575043694:14..122TCONS_00042968-exon-sc0003820-1575043694:14..122Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1491911889:4184..4420TCONS_00042968-exon-sc0003820-1491911889:4184..4420Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1510915933:4184..4420TCONS_00042968-exon-sc0003820-1510915933:4184..4420Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1575043694:4184..4420TCONS_00042968-exon-sc0003820-1575043694:4184..4420Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1491911889:5056..5139TCONS_00042968-exon-sc0003820-1491911889:5056..5139Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1510915933:5056..5139TCONS_00042968-exon-sc0003820-1510915933:5056..5139Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1575043694:5056..5139TCONS_00042968-exon-sc0003820-1575043694:5056..5139Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1491911889:5276..5314TCONS_00042968-exon-sc0003820-1491911889:5276..5314Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1510915933:5276..5314TCONS_00042968-exon-sc0003820-1510915933:5276..5314Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1575043694:5276..5314TCONS_00042968-exon-sc0003820-1575043694:5276..5314Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1491911889:5914..6598TCONS_00042968-exon-sc0003820-1491911889:5914..6598Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1510915933:5914..6598TCONS_00042968-exon-sc0003820-1510915933:5914..6598Clytia hemisphaericaexon
TCONS_00042968-exon-sc0003820-1575043694:5914..6598TCONS_00042968-exon-sc0003820-1575043694:5914..6598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003820supercontigsc0003820:14..6598 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.379021	0	0.293105	0.165476	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.698695	1.48493	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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