|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042953 ID=TCONS_00042953|Name=TCONS_00042953|organism=Clytia hemisphaerica|type=transcript|length=1642bpRun BLAST on NCBI protein sequence of TCONS_00042953-protein >TCONS_00042953-protein ID=TCONS_00042953-protein|Name=TCONS_00042953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp DKEEVHGCDETKHLEIVIKLEDESTGYPDDELLEPFKSHENELFKNHCRNRun BLAST on NCBI transcript from alignment at sc0003803:2679..9079+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00042953 ID=TCONS_00042953|Name=TCONS_00042953|organism=Clytia hemisphaerica|type=transcript|length=6401bp|location=Sequence derived from alignment at sc0003803:2679..9079+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0003803:2679..9079+ >TCONS_00042953 ID=TCONS_00042953|Name=TCONS_00042953|organism=Clytia hemisphaerica|type=CDS|length=1128bp|location=Sequence derived from alignment at sc0003803:2679..9079+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00042953 vs. Swiss-Prot (Human)
Match: ZNF3 (Zinc finger protein 3 OS=Homo sapiens GN=ZNF3 PE=1 SV=3) HSP 1 Score: 160.999 bits (406), Expect = 4.367e-43 Identity = 87/183 (47.54%), Postives = 117/183 (63.93%), Query Frame = 2
Query: 476 SSVKEHQRT-IYDKPFKCQQCSKSLATKRN*LRHQRTSHQGIKAFQCQECGKCFAEKKKLTSHQRTVHQGIKLFKCRECGKFFGRKTTLTLHQRTVHEGIKPFQCQGCGKSFGRKTTLTSHQRTVHEGLKPFQCQECGKSFGRKTTLTFHQRILHEGVTVKAFKCQECGKCFSTKSNLKMHQR 1021
S++ HQR + D+P KC +CSKS + ++HQR H G K ++C ECGK F++ L HQR +H G K ++C +CGK F + L LH+R +H G KP++C CGK+F +TLT HQR +H G KP+ C ECGK+F R +TL HQRI H G K ++C ECGK FS S+L HQR
Sbjct: 185 SNLISHQRLPVGDRPHKCDECSKSFNRTSDLIQHQRI-HTGEKPYECNECGKAFSQSSHLIQHQR-IHTGEKPYECSDCGKTFSCSSALILHRR-IHTGEKPYECNECGKTFSWSSTLTHHQR-IHTGEKPYACNECGKAFSRSSTLIHHQRI-HTG--EKPYECNECGKAFSQSSHLYQHQR 360 HSP 2 Score: 147.132 bits (370), Expect = 2.282e-38 Identity = 81/183 (44.26%), Postives = 114/183 (62.30%), Query Frame = 2
Query: 476 SSVKEHQRT-IYDKPFKCQQCSKSLATKRN*LRHQRTSHQGIKAFQCQECGKCFAEKKKLTSHQRTVHQGIKLFKCRECGKFFGRKTTLTLHQRTVHEGIKPFQCQGCGKSFGRKTTLTSHQRTVHEGLKPFQCQECGKSFGRKTTLTFHQRILHEGVTVKAFKCQECGKCFSTKSNLKMHQR 1021
S + +HQR +KP++C +C K+ + + ++HQR H G K ++C +CGK F+ L H+R +H G K ++C ECGK F +TLT HQR +H G KP+ C CGK+F R +TL HQR +H G KP++C ECGK+F + + L HQRI H G K ++C ECG F+ S L HQR
Sbjct: 213 SDLIQHQRIHTGEKPYECNECGKAFSQSSHLIQHQRI-HTGEKPYECSDCGKTFSCSSALILHRR-IHTGEKPYECNECGKTFSWSSTLTHHQR-IHTGEKPYACNECGKAFSRSSTLIHHQR-IHTGEKPYECNECGKAFSQSSHLYQHQRI-HTG--EKPYECMECGGKFTYSSGLIQHQR 388 HSP 3 Score: 142.51 bits (358), Expect = 6.801e-37 Identity = 80/183 (43.72%), Postives = 107/183 (58.47%), Query Frame = 2
Query: 476 SSVKEHQRT-IYDKPFKCQQCSKSLATKRN*LRHQRTSHQGIKAFQCQECGKCFAEKKKLTSHQRTVHQGIKLFKCRECGKFFGRKTTLTLHQRTVHEGIKPFQCQGCGKSFGRKTTLTSHQRTVHEGLKPFQCQECGKSFGRKTTLTFHQRILHEGVTVKAFKCQECGKCFSTKSNLKMHQR 1021
S + +HQR +KP++C C K+ + + H+R H G K ++C ECGK F+ LT HQR +H G K + C ECGK F R +TL HQR +H G KP++C CGK+F + + L HQR +H G KP++C ECG F + L HQRI H G ++C ECGK F S L HQR
Sbjct: 241 SHLIQHQRIHTGEKPYECSDCGKTFSCSSALILHRRI-HTGEKPYECNECGKTFSWSSTLTHHQR-IHTGEKPYACNECGKAFSRSSTLIHHQR-IHTGEKPYECNECGKAFSQSSHLYQHQR-IHTGEKPYECMECGGKFTYSSGLIQHQRI-HTGEN--PYECSECGKAFRYSSALVRHQR 416 HSP 4 Score: 119.013 bits (297), Expect = 6.797e-29 Identity = 60/141 (42.55%), Postives = 82/141 (58.16%), Query Frame = 2
Query: 509 DKPFKCQQCSKSLATKRN*LRHQRTSHQGIKAFQCQECGKCFAEKKKLTSHQRTVHQGIKLFKCRECGKFFGRKTTLTLHQRTVHEGIKPFQCQGCGKSFGRKTTLTSHQRTVHEGLKPFQCQECGKSFGRKTTLTFHQRI 931
+KP++C +C K+ + HQR H G K + C ECGK F+ L HQR +H G K ++C ECGK F + + L HQR +H G KP++C CG F + L HQR +H G P++C ECGK+F + L HQRI
Sbjct: 281 EKPYECNECGKTFSWSSTLTHHQRI-HTGEKPYACNECGKAFSRSSTLIHHQR-IHTGEKPYECNECGKAFSQSSHLYQHQR-IHTGEKPYECMECGGKFTYSSGLIQHQR-IHTGENPYECSECGKAFRYSSALVRHQRI 417 The following BLAST results are available for this feature:
BLAST of TCONS_00042953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.