TCONS_00042944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042944
Unique NameTCONS_00042944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042944 ID=TCONS_00042944|Name=TCONS_00042944|organism=Clytia hemisphaerica|type=transcript|length=332bp
agaaaatcaaacaaaaatattatataaaatcAAACATACAACTGGCTTGG
CAATAATCATCTCCTCTAAATTCATGATTAATTTTTAAATATAAAATGTG
CAAGATGATTTGCAGCGCAACCGATATCAATCCATCAACCTGCGTCAACT
ATCCAACCGTCATATTGGTGTATCATCCGTCGAACGATCATTGTGAATAA
AGGTCGTGAGAAGCACAGTCACTCGCAACTGtacacttttctttttatta
gtATTTTACGTTACTATTGTATATTTTGTAAAGTAGGACCTATCAAGCAA
TAAAGTAAAACATCTTTCCGGATGCGCAGTTG
Run BLAST on NCBI

transcript from alignment at sc0003800:3011..3897+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042944 ID=TCONS_00042944|Name=TCONS_00042944|organism=Clytia hemisphaerica|type=transcript|length=887bp|location=Sequence derived from alignment at sc0003800:3011..3897+ (Clytia hemisphaerica)
agaaaatcaaacaaaaatattatataaaatcAAACATACAACTGGCTTGG
CAATAATCATCTCCTCTAAATTCATGATTAATTTTTAAATGTAAGTGAAA
CTTGATTTATACACTCTGTTAAATTTGTTAATATTATTTCTTATGTTTGA
ACATGCTGGCATTTAGATTGCCTCGTAAATAATGATTGCTCTTTTCACAT
ATAGATAAAATGTGCAAGATGATTTGCAGCGCAACCGATATCAATCCATC
AACCTGCGTCAACTATCCAACCGTAAGTTCTCCAACTTCGTATCAGAGTT
CTTTCAATGTTTATGTCCTTCCGTACTGTATGATGCTTTGTTCTTTTTAT
TAGAGAGAAAATCGcttaaaggtattttttttaGAAGATAAATAAAGCTA
tcacaacaaaaatttattttcattagatATTTGTCGAATTTCCTGATACT
TCCATGTGCTAATAAATCGACTGGAAAGTGTTCATGTTTACAAGCAATCT
TCATGGTGAACCCTTTGTAATCAGTTGGCAAATCAACGTAAGTGTTACGC
TAGTTGTATTTAATTGTTCATTTACTATAGTAATTATAAGTAACTGCtat
atttactttatttactAAACTCTCTTCTCGTTCGTTGTGCGTGATAAGCG
ACCGGTGATATGATGACACTAAAtgttaacagaaaaatatcaataaaatc
AATCTTCTTTCAGGTCATATTGGTGTATCATCCGTCGAACGATCATTGTG
AATAAAGGTCGTGAGAAGCACAGTCACTCGCAACTGtacacttttctttt
tattagtATTTTACGTTACTATTGTATATTTTGTAAAGTAGGACCTATCA
AGCAATAAAGTAAAACATCTTTCCGGATGCGCAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026709XLOC_026709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042944-exon-sc0003800-1491911889:3011..3100TCONS_00042944-exon-sc0003800-1491911889:3011..3100Clytia hemisphaericaexon
TCONS_00042944-exon-sc0003800-1510915933:3011..3100TCONS_00042944-exon-sc0003800-1510915933:3011..3100Clytia hemisphaericaexon
TCONS_00042944-exon-sc0003800-1575043694:3011..3100TCONS_00042944-exon-sc0003800-1575043694:3011..3100Clytia hemisphaericaexon
TCONS_00042944-exon-sc0003800-1491911889:3215..3282TCONS_00042944-exon-sc0003800-1491911889:3215..3282Clytia hemisphaericaexon
TCONS_00042944-exon-sc0003800-1510915933:3215..3282TCONS_00042944-exon-sc0003800-1510915933:3215..3282Clytia hemisphaericaexon
TCONS_00042944-exon-sc0003800-1575043694:3215..3282TCONS_00042944-exon-sc0003800-1575043694:3215..3282Clytia hemisphaericaexon
TCONS_00042944-exon-sc0003800-1491911889:3724..3897TCONS_00042944-exon-sc0003800-1491911889:3724..3897Clytia hemisphaericaexon
TCONS_00042944-exon-sc0003800-1510915933:3724..3897TCONS_00042944-exon-sc0003800-1510915933:3724..3897Clytia hemisphaericaexon
TCONS_00042944-exon-sc0003800-1575043694:3724..3897TCONS_00042944-exon-sc0003800-1575043694:3724..3897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003800supercontigsc0003800:3011..3897 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	19.0592	19.6621	25.2159	20.4676	18.098	13.2467	15.7798	11.3818	10.9811	7.96852	0.582705	0.175761	1.29914	0.819034	0	0	0	0.40807	0	0.300662	16.4128	17.6746	0	0.422083	1.60068	0.978501
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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